| UniProt ID | GLYM_HUMAN | |
|---|---|---|
| UniProt AC | P34897 | |
| Protein Name | Serine hydroxymethyltransferase, mitochondrial | |
| Gene Name | SHMT2 {ECO:0000312|HGNC:HGNC:10852} | |
| Organism | Homo sapiens (Human). | |
| Sequence Length | 504 | |
| Subcellular Localization | Mitochondrion . Mitochondrion matrix, mitochondrion nucleoid . Mitochondrion inner membrane . Cytoplasm . Nucleus . Mainly localizes in the mitochondrion. Also found in the cytoplasm and nucleus as part of the BRISC complex (PubMed:24075985). | |
| Protein Description | Catalyzes the cleavage of serine to glycine accompanied with the production of 5,10-methylenetetrahydrofolate, an essential intermediate for purine biosynthesis. [PubMed: 24075985] | |
| Protein Sequence | MLYFSLFWAARPLQRCGQLVRMAIRAQHSNAAQTQTGEANRGWTGQESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKSKTAKLQDFKSFLLKDSETSQRLANLRQRVEQFARAFPMPGFDEH | |
| Overview of Protein Modification Sites with Functional and Structural Information | ||
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* ASA = Accessible Surface Area
| Locations | Modification | Substrate Peptides & Secondary Structure |
ASA (%) | Reference | Orthologous Protein Cluster |
|---|---|---|---|---|---|
| 3 | Phosphorylation | -----MLYFSLFWAA -----CCHHHHHHHH | 6.99 | - | |
| 44 | Phosphorylation | GEANRGWTGQESLSD CCCCCCCCCCCCCCC | 31.63 | 28857561 | |
| 48 | Phosphorylation | RGWTGQESLSDSDPE CCCCCCCCCCCCCHH | 25.86 | 28857561 | |
| 50 | Phosphorylation | WTGQESLSDSDPEMW CCCCCCCCCCCHHHH | 44.33 | 29507054 | |
| 52 | Phosphorylation | GQESLSDSDPEMWEL CCCCCCCCCHHHHHH | 52.25 | 27251275 | |
| 74 | Ubiquitination | QCRGLELIASENFCS HCCCHHHHHCCCCHH | 2.64 | 21890473 | |
| 90 | Phosphorylation | AALEALGSCLNNKYS HHHHHHHHHHHCCCC | 19.11 | 28152594 | |
| 95 | 2-Hydroxyisobutyrylation | LGSCLNNKYSEGYPG HHHHHHCCCCCCCCC | 49.43 | - | |
| 95 | Acetylation | LGSCLNNKYSEGYPG HHHHHHCCCCCCCCC | 49.43 | 25953088 | |
| 95 | Ubiquitination | LGSCLNNKYSEGYPG HHHHHHCCCCCCCCC | 49.43 | 21890473 | |
| 95 | Ubiquitination | LGSCLNNKYSEGYPG HHHHHHCCCCCCCCC | 49.43 | 21890473 | |
| 96 | Phosphorylation | GSCLNNKYSEGYPGK HHHHHCCCCCCCCCC | 17.68 | 28152594 | |
| 97 | Phosphorylation | SCLNNKYSEGYPGKR HHHHCCCCCCCCCCC | 26.59 | 28152594 | |
| 100 | Phosphorylation | NNKYSEGYPGKRYYG HCCCCCCCCCCCCCC | 12.54 | 28152594 | |
| 103 | 2-Hydroxyisobutyrylation | YSEGYPGKRYYGGAE CCCCCCCCCCCCCHH | 32.49 | - | |
| 103 | Acetylation | YSEGYPGKRYYGGAE CCCCCCCCCCCCCHH | 32.49 | 19608861 | |
| 103 | Malonylation | YSEGYPGKRYYGGAE CCCCCCCCCCCCCHH | 32.49 | 26320211 | |
| 103 | Ubiquitination | YSEGYPGKRYYGGAE CCCCCCCCCCCCCHH | 32.49 | 19608861 | |
| 144 | Phosphorylation | NVQPYSGSPANLAVY CCCCCCCCCHHHHHH | 18.20 | 25627689 | |
| 173 | Phosphorylation | LPDGGHLTHGYMSDV CCCCCCCCCCCHHCC | 13.95 | 21406692 | |
| 176 | Phosphorylation | GGHLTHGYMSDVKRI CCCCCCCCHHCCEEE | 5.95 | 21406692 | |
| 178 | Phosphorylation | HLTHGYMSDVKRISA CCCCCCHHCCEEEEE | 30.67 | 20068231 | |
| 179 | Ubiquitination | LTHGYMSDVKRISAT CCCCCHHCCEEEEEE | 33.17 | 21890473 | |
| 181 | Acetylation | HGYMSDVKRISATSI CCCHHCCEEEEEEEE | 49.34 | 19608861 | |
| 181 | Malonylation | HGYMSDVKRISATSI CCCHHCCEEEEEEEE | 49.34 | 26320211 | |
| 181 | Ubiquitination | HGYMSDVKRISATSI CCCHHCCEEEEEEEE | 49.34 | 21906983 | |
| 184 | Phosphorylation | MSDVKRISATSIFFE HHCCEEEEEEEEEEE | 29.53 | 28348404 | |
| 186 | Phosphorylation | DVKRISATSIFFESM CCEEEEEEEEEEECC | 18.63 | 28857561 | |
| 187 | Phosphorylation | VKRISATSIFFESMP CEEEEEEEEEEECCC | 19.67 | 28857561 | |
| 192 | Phosphorylation | ATSIFFESMPYKLNP EEEEEEECCCCCCCC | 21.65 | 28857561 | |
| 196 | Acetylation | FFESMPYKLNPKTGL EEECCCCCCCCCCCC | 35.60 | 19608861 | |
| 196 | Ubiquitination | FFESMPYKLNPKTGL EEECCCCCCCCCCCC | 35.60 | - | |
| 200 | 2-Hydroxyisobutyrylation | MPYKLNPKTGLIDYN CCCCCCCCCCCCCHH | 54.90 | - | |
| 200 | Acetylation | MPYKLNPKTGLIDYN CCCCCCCCCCCCCHH | 54.90 | 23954790 | |
| 200 | Malonylation | MPYKLNPKTGLIDYN CCCCCCCCCCCCCHH | 54.90 | 26320211 | |
| 200 | Ubiquitination | MPYKLNPKTGLIDYN CCCCCCCCCCCCCHH | 54.90 | 21890473 | |
| 201 | Phosphorylation | PYKLNPKTGLIDYNQ CCCCCCCCCCCCHHH | 38.18 | 28152594 | |
| 206 | Phosphorylation | PKTGLIDYNQLALTA CCCCCCCHHHHHHHH | 9.60 | 28152594 | |
| 212 | Phosphorylation | DYNQLALTARLFRPR CHHHHHHHHHHHCCC | 12.25 | 28152594 | |
| 225 | Phosphorylation | PRLIIAGTSAYARLI CCEEEECCHHHHHHH | 10.93 | 28152594 | |
| 226 | Phosphorylation | RLIIAGTSAYARLID CEEEECCHHHHHHHH | 20.54 | 28152594 | |
| 228 | Phosphorylation | IIAGTSAYARLIDYA EEECCHHHHHHHHHH | 7.63 | 28152594 | |
| 230 | Methylation | AGTSAYARLIDYARM ECCHHHHHHHHHHHH | 21.35 | 115916929 | |
| 236 | Methylation | ARLIDYARMREVCDE HHHHHHHHHHHHHHH | 20.61 | 115916933 | |
| 245 | Acetylation | REVCDEVKAHLLADM HHHHHHHHHHHHHHH | 28.21 | 25825284 | |
| 259 | Acetylation | MAHISGLVAAKVIPS HHHHHHHHHHHHCCC | 5.78 | 19608861 | |
| 262 | Ubiquitination | ISGLVAAKVIPSPFK HHHHHHHHHCCCCCC | 30.84 | - | |
| 266 | Phosphorylation | VAAKVIPSPFKHADI HHHHHCCCCCCCCCE | 31.67 | 30266825 | |
| 269 | Acetylation | KVIPSPFKHADIVTT HHCCCCCCCCCEEEE | 41.07 | 23954790 | |
| 269 | Malonylation | KVIPSPFKHADIVTT HHCCCCCCCCCEEEE | 41.07 | 26320211 | |
| 269 | Methylation | KVIPSPFKHADIVTT HHCCCCCCCCCEEEE | 41.07 | 22634763 | |
| 269 | Succinylation | KVIPSPFKHADIVTT HHCCCCCCCCCEEEE | 41.07 | 27452117 | |
| 269 | Ubiquitination | KVIPSPFKHADIVTT HHCCCCCCCCCEEEE | 41.07 | 19608861 | |
| 275 | Phosphorylation | FKHADIVTTTTHKTL CCCCCEEEECCCHHH | 20.82 | 28152594 | |
| 276 | Phosphorylation | KHADIVTTTTHKTLR CCCCEEEECCCHHHH | 20.85 | 28152594 | |
| 277 | Phosphorylation | HADIVTTTTHKTLRG CCCEEEECCCHHHHC | 19.96 | 28152594 | |
| 278 | Phosphorylation | ADIVTTTTHKTLRGA CCEEEECCCHHHHCC | 21.20 | 28152594 | |
| 280 | N6-(pyridoxal phosphate)lysine | IVTTTTHKTLRGARS EEEECCCHHHHCCCC | 47.35 | - | |
| 280 | 2-Hydroxyisobutyrylation | IVTTTTHKTLRGARS EEEECCCHHHHCCCC | 47.35 | - | |
| 280 | Acetylation | IVTTTTHKTLRGARS EEEECCCHHHHCCCC | 47.35 | 26051181 | |
| 280 | Malonylation | IVTTTTHKTLRGARS EEEECCCHHHHCCCC | 47.35 | 26320211 | |
| 280 | Other | IVTTTTHKTLRGARS EEEECCCHHHHCCCC | 47.35 | 29364879 | |
| 280 | Succinylation | IVTTTTHKTLRGARS EEEECCCHHHHCCCC | 47.35 | 29180469 | |
| 280 | Ubiquitination | IVTTTTHKTLRGARS EEEECCCHHHHCCCC | 47.35 | 21906983 | |
| 287 | Acetylation | KTLRGARSGLIFYRK HHHHCCCCEEEEEEC | 37.10 | 19608861 | |
| 297 | Acetylation | IFYRKGVKAVDPKTG EEEECCCCEECCCCC | 51.89 | 19608861 | |
| 297 | Ubiquitination | IFYRKGVKAVDPKTG EEEECCCCEECCCCC | 51.89 | 19608861 | |
| 302 | Acetylation | GVKAVDPKTGREIPY CCCEECCCCCCCCCC | 60.18 | 23749302 | |
| 302 | Succinylation | GVKAVDPKTGREIPY CCCEECCCCCCCCCC | 60.18 | 27452117 | |
| 346 | Acetylation | LKQACTPMFREYSLQ HHHHCCHHHHHHHHH | 2.39 | 19608861 | |
| 346 | Ubiquitination | LKQACTPMFREYSLQ HHHHCCHHHHHHHHH | 2.39 | 19608861 | |
| 350 | Phosphorylation | CTPMFREYSLQVLKN CCHHHHHHHHHHHHH | 15.49 | 28152594 | |
| 351 | Phosphorylation | TPMFREYSLQVLKNA CHHHHHHHHHHHHHH | 13.94 | 28152594 | |
| 356 | 2-Hydroxyisobutyrylation | EYSLQVLKNARAMAD HHHHHHHHHHHHHHH | 50.10 | - | |
| 356 | Acetylation | EYSLQVLKNARAMAD HHHHHHHHHHHHHHH | 50.10 | 19608861 | |
| 356 | Malonylation | EYSLQVLKNARAMAD HHHHHHHHHHHHHHH | 50.10 | 26320211 | |
| 356 | Ubiquitination | EYSLQVLKNARAMAD HHHHHHHHHHHHHHH | 50.10 | 19608861 | |
| 361 | Sulfoxidation | VLKNARAMADALLER HHHHHHHHHHHHHHC | 2.64 | 21406390 | |
| 368 | Methylation | MADALLERGYSLVSG HHHHHHHCCCEEECC | 49.68 | 115916937 | |
| 370 | Phosphorylation | DALLERGYSLVSGGT HHHHHCCCEEECCCC | 12.68 | 28152594 | |
| 371 | Phosphorylation | ALLERGYSLVSGGTD HHHHCCCEEECCCCC | 25.72 | 28152594 | |
| 389 | 2-Hydroxyisobutyrylation | VLVDLRPKGLDGARA EEEECCCCCCCHHHH | 66.72 | - | |
| 389 | Acetylation | VLVDLRPKGLDGARA EEEECCCCCCCHHHH | 66.72 | 27452117 | |
| 389 | Ubiquitination | VLVDLRPKGLDGARA EEEECCCCCCCHHHH | 66.72 | - | |
| 404 | Phosphorylation | ERVLELVSITANKNT HHHHHHEEEECCCCC | 27.18 | 21712546 | |
| 406 | Phosphorylation | VLELVSITANKNTCP HHHHEEEECCCCCCC | 19.37 | 28851738 | |
| 409 | 2-Hydroxyisobutyrylation | LVSITANKNTCPGDR HEEEECCCCCCCCCC | 51.69 | - | |
| 409 | Acetylation | LVSITANKNTCPGDR HEEEECCCCCCCCCC | 51.69 | 25953088 | |
| 409 | Malonylation | LVSITANKNTCPGDR HEEEECCCCCCCCCC | 51.69 | 26320211 | |
| 409 | Ubiquitination | LVSITANKNTCPGDR HEEEECCCCCCCCCC | 51.69 | - | |
| 416 | Methylation | KNTCPGDRSAITPGG CCCCCCCCCCCCCCC | 33.62 | 115916941 | |
| 417 | Phosphorylation | NTCPGDRSAITPGGL CCCCCCCCCCCCCCE | 28.85 | 30266825 | |
| 420 | Phosphorylation | PGDRSAITPGGLRLG CCCCCCCCCCCEECC | 18.65 | 30266825 | |
| 442 | Methylation | QFREDDFRRVVDFID CCCCCHHHHHHHHHH | 37.16 | 115916945 | |
| 448 | Ubiquitination | FRRVVDFIDEGVNIG HHHHHHHHHHCCCEE | 4.00 | 21890473 | |
| 453 | Ubiquitination | DFIDEGVNIGLEVKS HHHHHCCCEECEECC | 33.20 | 21890473 | |
| 454 | Acetylation | FIDEGVNIGLEVKSK HHHHCCCEECEECCC | 6.56 | 19608861 | |
| 459 | 2-Hydroxyisobutyrylation | VNIGLEVKSKTAKLQ CCEECEECCCCCCHH | 36.54 | - | |
| 459 | Acetylation | VNIGLEVKSKTAKLQ CCEECEECCCCCCHH | 36.54 | 19608861 | |
| 459 | Ubiquitination | VNIGLEVKSKTAKLQ CCEECEECCCCCCHH | 36.54 | 19608861 | |
| 459 | Ubiquitination | VNIGLEVKSKTAKLQ CCEECEECCCCCCHH | 36.54 | 21890473 | |
| 464 | 2-Hydroxyisobutyrylation | EVKSKTAKLQDFKSF EECCCCCCHHHHHHH | 52.49 | - | |
| 464 | Acetylation | EVKSKTAKLQDFKSF EECCCCCCHHHHHHH | 52.49 | 19608861 | |
| 464 | Malonylation | EVKSKTAKLQDFKSF EECCCCCCHHHHHHH | 52.49 | 26320211 | |
| 464 | Ubiquitination | EVKSKTAKLQDFKSF EECCCCCCHHHHHHH | 52.49 | 19608861 | |
| 464 | Ubiquitination | EVKSKTAKLQDFKSF EECCCCCCHHHHHHH | 52.49 | 21890473 | |
| 469 | "N6,N6-dimethyllysine" | TAKLQDFKSFLLKDS CCCHHHHHHHHHCCC | 48.89 | - | |
| 469 | 2-Hydroxyisobutyrylation | TAKLQDFKSFLLKDS CCCHHHHHHHHHCCC | 48.89 | - | |
| 469 | Acetylation | TAKLQDFKSFLLKDS CCCHHHHHHHHHCCC | 48.89 | 19608861 | |
| 469 | Methylation | TAKLQDFKSFLLKDS CCCHHHHHHHHHCCC | 48.89 | - | |
| 469 | Ubiquitination | TAKLQDFKSFLLKDS CCCHHHHHHHHHCCC | 48.89 | 21890473 | |
| 470 | Phosphorylation | AKLQDFKSFLLKDSE CCHHHHHHHHHCCCH | 22.56 | 23312004 | |
| 474 | Acetylation | DFKSFLLKDSETSQR HHHHHHHCCCHHHHH | 62.45 | 19608861 | |
| 474 | Malonylation | DFKSFLLKDSETSQR HHHHHHHCCCHHHHH | 62.45 | 26320211 | |
| 474 | Ubiquitination | DFKSFLLKDSETSQR HHHHHHHCCCHHHHH | 62.45 | 21890473 |
| Modified Location | Modified Residue | Modification | Type of Upstream Proteins | Gene Name of Upstream Proteins | UniProt AC of Upstream Proteins | Sources |
|---|---|---|---|---|---|---|
Oops, there are no upstream regulatory protein records of GLYM_HUMAN !! | ||||||
| Modified Location | Modified Residue | Modification | Function | Reference |
|---|---|---|---|---|
| 280 | K | Succinylation |
| 29180469 |
* Distance = the distance between SAP position and PTM sites.
| Modified Location | Modification | Variant Position (Distance <= 10) |
Residue Change | SAP | Related Disease | Reference |
|---|---|---|---|---|---|---|
Oops, there are no SNP-PTM records of GLYM_HUMAN !! | ||||||
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| Acetylation | |
| Reference | PubMed |
| "Lysine acetylation targets protein complexes and co-regulates majorcellular functions."; Choudhary C., Kumar C., Gnad F., Nielsen M.L., Rehman M., Walther T.,Olsen J.V., Mann M.; Science 325:834-840(2009). Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT LYS-103; LYS-181; LYS-196;LYS-269; LYS-297; LYS-356; LYS-464; LYS-469 AND LYS-474, AND MASSSPECTROMETRY. | |