GCN4_YEAST - dbPTM
GCN4_YEAST - PTM Information in dbPTM
Basic Information of Protein
UniProt ID GCN4_YEAST
UniProt AC P03069
Protein Name General control protein GCN4
Gene Name GCN4
Organism Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast).
Sequence Length 281
Subcellular Localization Nucleus.
Protein Description Is a transcription factor that is responsible for the activation of more than 30 genes required for amino acid or for purine biosynthesis in response to amino acid or purine starvation. Binds and recognize the DNA sequence: 5'-TGA[CG]TCA-3'..
Protein Sequence MSEYQPSLFALNPMGFSPLDGSKSTNENVSASTSTAKPMVGQLIFDKFIKTEEDPIIKQDTPSNLDFDFALPQTATAPDAKTVLPIPELDDAVVESFFSSSTDSTPMFEYENLEDNSKEWTSLFDNDIPVTTDDVSLADKAIESTEEVSLVPSNLEVSTTSFLPTPVLEDAKLTQTRKVKKPNSVVKKSHHVGKDDESRLDHLGVVAYNRKQRSIPLSPIVPESSDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVGER
Overview of Protein Modification Sites with Functional and Structural Information
Experimental Post-Translational Modification Sites

* ASA = Accessible Surface Area

Locations Modification Substrate Peptides
&
Secondary Structure
ASA (%) Reference Orthologous
Protein Cluster
17PhosphorylationALNPMGFSPLDGSKS
ECCCCCCCCCCCCCC
20.8711331604
23UbiquitinationFSPLDGSKSTNENVS
CCCCCCCCCCCCCCC
67.8217644757
24PhosphorylationSPLDGSKSTNENVSA
CCCCCCCCCCCCCCC
37.8627017623
32PhosphorylationTNENVSASTSTAKPM
CCCCCCCCHHCCCCC
18.5127017623
34PhosphorylationENVSASTSTAKPMVG
CCCCCCHHCCCCCCH
24.7127017623
37UbiquitinationSASTSTAKPMVGQLI
CCCHHCCCCCCHHHH
33.4617644757
47UbiquitinationVGQLIFDKFIKTEED
CHHHHHHHCCCCCCC
37.9317644757
50SumoylationLIFDKFIKTEEDPII
HHHHHCCCCCCCCCC
53.68-
50UbiquitinationLIFDKFIKTEEDPII
HHHHHCCCCCCCCCC
53.6817644757
58SumoylationTEEDPIIKQDTPSNL
CCCCCCCCCCCCCCC
42.72-
58UbiquitinationTEEDPIIKQDTPSNL
CCCCCCCCCCCCCCC
42.7217644757
61PhosphorylationDPIIKQDTPSNLDFD
CCCCCCCCCCCCCCC
26.5611331604
63PhosphorylationIIKQDTPSNLDFDFA
CCCCCCCCCCCCCEE
52.7121551504
81UbiquitinationTATAPDAKTVLPIPE
CCCCCCCCCEEECCC
46.6917644757
105PhosphorylationFSSSTDSTPMFEYEN
HCCCCCCCCCEEEEC
22.9111331604
118UbiquitinationENLEDNSKEWTSLFD
ECCCCCCCHHHHHCC
64.6217644757
136PhosphorylationPVTTDDVSLADKAIE
CCCCCCCHHHHHHHH
25.4923810556
140UbiquitinationDDVSLADKAIESTEE
CCCHHHHHHHHCCCC
45.7317644757
165PhosphorylationSTTSFLPTPVLEDAK
ECCCCCCCCCCCCCC
28.3310712509
184PhosphorylationRKVKKPNSVVKKSHH
CCCCCCCCHHCCCCC
36.4921551504
187UbiquitinationKKPNSVVKKSHHVGK
CCCCCHHCCCCCCCC
46.5315699485
188UbiquitinationKPNSVVKKSHHVGKD
CCCCHHCCCCCCCCC
43.3315699485
194UbiquitinationKKSHHVGKDDESRLD
CCCCCCCCCCHHHHH
62.0015699485
211UbiquitinationGVVAYNRKQRSIPLS
HEEEECCCCCCCCCC
46.5617644757
214PhosphorylationAYNRKQRSIPLSPIV
EECCCCCCCCCCCCC
26.5125752575
218PhosphorylationKQRSIPLSPIVPESS
CCCCCCCCCCCCCCC
13.7623810556
224PhosphorylationLSPIVPESSDPAALK
CCCCCCCCCCHHHHH
33.6919795423
225PhosphorylationSPIVPESSDPAALKR
CCCCCCCCCHHHHHH
46.0519795423
231UbiquitinationSSDPAALKRARNTEA
CCCHHHHHHHHCHHH
39.0117644757
251UbiquitinationARKLQRMKQLEDKVE
HHHHHHHHHHHHHHH
54.6517644757
256UbiquitinationRMKQLEDKVEELLSK
HHHHHHHHHHHHHHC
42.0217644757
263UbiquitinationKVEELLSKNYHLENE
HHHHHHHCCCCHHHH
62.5917644757

Upstream regulatory proteins (kinases for phosphorylation sites, E3 ubiquitin ligases of ubiquitination sites, ...)
Modified Location Modified Residue Modification Type of Upstream Proteins Gene Name of Upstream Proteins UniProt AC of Upstream Proteins Sources
165TPhosphorylationKinasePHO85P17157
Uniprot
-KUbiquitinationE3 ubiquitin ligaseCDC4P07834
PMID:22199232

Functions of PTM Sites
Modified Location Modified Residue Modification Function Reference
165TPhosphorylation

12101234
165Tubiquitylation

12101234

Disease-associated PTM Sites based on SAP

* Distance = the distance between SAP position and PTM sites.

Modified Location Modification Variant Position
(Distance <= 10)
Residue Change SAP Related Disease Reference

Oops, there are no SNP-PTM records of GCN4_YEAST !!

Protein-Protein Interaction
Interacting Protein Gene Name Interaction Type PPI Reference Domain-Domain Interactions
MED15_YEASTGAL11physical
11073972
SNF5_YEASTSNF5physical
14580348
SWI1_YEASTSWI1physical
14580348
MED21_YEASTSRB7physical
12665580
STH1_YEASTSTH1physical
12665580
SNF12_YEASTSNF12physical
12665580
SNF5_YEASTSNF5physical
11865042
SWI1_YEASTSWI1physical
11865042
SNF2_YEASTSNF2physical
11865042
SNF2_YEASTSNF2physical
10549297
MED3_YEASTPGD1physical
11073972
MED4_YEASTMED4physical
11073972
MED17_YEASTSRB4physical
11073972
MED21_YEASTSRB7physical
11073972
SNF5_YEASTSNF5physical
10549298
MED20_YEASTSRB2physical
10549298
MED20_YEASTSRB2physical
9844640
SNF12_YEASTSNF12physical
10549298
TAF9_YEASTTAF9physical
10549298
TAF9_YEASTTAF9physical
9844640
TAF5_YEASTTAF5physical
10549298
TAF5_YEASTTAF5physical
9844640
ARP7_YEASTARP7physical
10549297
TAF14_YEASTTAF14physical
10549297
ADA2_YEASTADA2physical
9844640
SPT20_YEASTSPT20physical
9844640
SPT7_YEASTSPT7physical
9844640
MED21_YEASTSRB7physical
9844640
TAF6_YEASTTAF6physical
9844640
TAF12_YEASTTAF12physical
9844640
MED20_YEASTSRB2physical
9488488
MED17_YEASTSRB4physical
9488488
TAF1_YEASTTAF1physical
9488488
TAF6_YEASTTAF6physical
9488488
TAF5_YEASTTAF5physical
9488488
TAF9_YEASTTAF9physical
9488488
MBF1_YEASTMBF1physical
9710580
ADA2_YEASTADA2physical
9697775
SPT3_YEASTSPT3physical
9697775
SPT7_YEASTSPT7physical
9697775
EPL1_YEASTEPL1physical
9697775
YNG2_YEASTYNG2physical
9697775
GCN4_YEASTGCN4physical
3678204
SNF5_YEASTSNF5physical
15289616
ADA2_YEASTADA2physical
9488488
NGG1_YEASTNGG1physical
9488488
ATR1_YEASTATR1genetic
3280970
MBF1_YEASTMBF1genetic
9710580
AFR1_YEASTAFR1genetic
7603436
GLN3_YEASTGLN3genetic
11244074
RPN10_YEASTRPN10physical
17499717
PRS6A_YEASTRPT5physical
17499717
SKO1_YEASTSKO1genetic
11113177
RPAB4_YEASTRPC10physical
17919657
TF2B_YEASTSUA7physical
17919657
CCL1_YEASTCCL1physical
17919657
TAF13_YEASTTAF13physical
17919657
MED15_YEASTGAL11physical
17919657
SNF2_YEASTSNF2physical
17919657
AHC1_YEASTAHC1physical
17919657
SPT3_YEASTSPT3physical
17919657
MED15_YEASTGAL11genetic
17919657
PCL5_YEASTPCL5genetic
18794371
GCN4_YEASTGCN4physical
19331323
BAS1_YEASTBAS1genetic
19525417
TOR1_YEASTTOR1genetic
19805817
MED15_YEASTGAL11physical
20308326
TAF12_YEASTTAF12physical
20308326
PCL5_YEASTPCL5genetic
21111745
KAPR_YEASTBCY1genetic
21119627
SNF1_YEASTSNF1genetic
21119627
HAP4_YEASTHAP4genetic
21119627
TRA1_YEASTTRA1physical
21149579
GLN3_YEASTGLN3physical
21184740
IXR1_YEASTIXR1genetic
20831804
MED15_YEASTGAL11physical
19940160
MED2_YEASTMED2physical
19940160
SNF6_YEASTSNF6physical
19940160
SPT3_YEASTSPT3physical
19940160
GCN4_YEASTGCN4physical
21045134
RAP1_YEASTRAP1physical
21183953
MED15_YEASTGAL11physical
21317429
MED15_YEASTGAL11genetic
21317429
MED15_YEASTGAL11physical
22195967
TAF12_YEASTTAF12physical
22195967
PHO85_YEASTPHO85genetic
22345516
END3_YEASTEND3physical
22875988
GCN4_YEASTGCN4physical
22856882
GCN4_YEASTGCN4physical
20027625
GCN4_YEASTGCN4physical
23116373
GCN4_YEASTGCN4physical
23661758
RPN11_YEASTRPN11physical
17978571
PRS6A_YEASTRPT5physical
17978571
RPN10_YEASTRPN10physical
17978571
SPT7_YEASTSPT7physical
24550006
TAF9_YEASTTAF9physical
24550006
TAF12_YEASTTAF12physical
24550006
GCN5_YEASTGCN5physical
24550006
TRA1_YEASTTRA1physical
24550006
SNF6_YEASTSNF6physical
24550006
TBP_YEASTSPT15physical
24550006
SPT7_YEASTSPT7physical
25713136
GCN4_YEASTGCN4physical
26262433
ATG41_YEASTICY2genetic
26565778
CG13_YEASTCLN3genetic
27708008
YBB0_YEASTYBL010Cgenetic
27708008
HEK2_YEASTHEK2genetic
27708008
UBP13_YEASTUBP13genetic
27708008
NU170_YEASTNUP170genetic
27708008
MIX23_YEASTMIX23genetic
27708008
UGA2_YEASTUGA2genetic
27708008
CHS3_YEASTCHS3genetic
27708008
ECM8_YEASTECM8genetic
27708008
RXT2_YEASTRXT2genetic
27708008
AIM3_YEASTAIM3genetic
27708008
YBY9_YEASTYBR139Wgenetic
27708008
AIM4_YEASTAIM4genetic
27708008
DER1_YEASTDER1genetic
27708008
DPO4_YEASTPOL4genetic
27708008
PAT1_YEASTPAT1genetic
27708008
RAD59_YEASTRAD59genetic
27708008
PEX19_YEASTPEX19genetic
27708008
BRE1_YEASTBRE1genetic
27708008
CYK3_YEASTCYK3genetic
27708008
YD131_YEASTYDR131Cgenetic
27708008
MKC7_YEASTMKC7genetic
27708008
NUM1_YEASTNUM1genetic
27708008
SAC3_YEASTSAC3genetic
27708008
MFB1_YEASTMFB1genetic
27708008
MNN10_YEASTMNN10genetic
27708008
SUM1_YEASTSUM1genetic
27708008
PDR15_YEASTPDR15genetic
27708008
ARO80_YEASTARO80genetic
27708008
KCC1_YEASTCMK1genetic
27708008
CWH41_YEASTCWH41genetic
27708008
AGA2_YEASTAGA2genetic
27708008
AAKG_YEASTSNF4genetic
27708008
XRN1_YEASTXRN1genetic
27708008
YG1C_YEASTYGR018Cgenetic
27708008
RS25A_YEASTRPS25Agenetic
27708008
SLX9_YEASTSLX9genetic
27708008
SKN1_YEASTSKN1genetic
27708008
CHO2_YEASTCHO2genetic
27708008
OPI1_YEASTOPI1genetic
27708008
RRM3_YEASTRRM3genetic
27708008
MED20_YEASTSRB2genetic
27708008
YIA6_YEASTYIA6genetic
27708008
EFM4_YEASTEFM4genetic
27708008
SDS3_YEASTSDS3genetic
27708008
TM108_YEASTTMA108genetic
27708008
SFH5_YEASTSFH5genetic
27708008
CYP7_YEASTCPR7genetic
27708008
ILM1_YEASTILM1genetic
27708008
IXR1_YEASTIXR1genetic
27708008
PRR1_YEASTPRR1genetic
27708008
DGR2_YEASTDGR2genetic
27708008
LST4_YEASTLST4genetic
27708008
NU133_YEASTNUP133genetic
27708008
SIC1_YEASTSIC1genetic
27708008
ARP6_YEASTARP6genetic
27708008
CSF1_YEASTCSF1genetic
27708008
YL149_YEASTYLR149Cgenetic
27708008
DPH5_YEASTDPH5genetic
27708008
ELO3_YEASTELO3genetic
27708008
IMDH4_YEASTIMD4genetic
27708008
CAC2_YEASTCAC2genetic
27708008
NU188_YEASTNUP188genetic
27708008
MAC1_YEASTMAC1genetic
27708008
SUB1_YEASTSUB1genetic
27708008
FET3_YEASTFET3genetic
27708008
MOT3_YEASTMOT3genetic
27708008
GBLP_YEASTASC1genetic
27708008
ASI1_YEASTASI1genetic
27708008
SAS2_YEASTSAS2genetic
27708008
EOS1_YEASTEOS1genetic
27708008
PMS1_YEASTPMS1genetic
27708008
ERP1_YEASTERP1genetic
27708008
ECM15_YEASTECM15genetic
27708008
HIR1_YEASTHIR1genetic
27708008
YEL1_YEASTYEL1genetic
27708008
AST1_YEASTAST1genetic
27708008
RL23A_YEASTRPL23Agenetic
27708008
RL23B_YEASTRPL23Agenetic
27708008
SFT2_YEASTSFT2genetic
27708008
YBM3_YEASTYBR013Cgenetic
27708008
YRO2_YEASTYRO2genetic
27708008
RDH54_YEASTRDH54genetic
27708008
UBC4_YEASTUBC4genetic
27708008
SIF2_YEASTSIF2genetic
27708008
GID4_YEASTVID24genetic
27708008
ADPP_YEASTYSA1genetic
27708008
ARL1_YEASTARL1genetic
27708008
NPL4_YEASTNPL4genetic
27708008
YB34_YEASTYBR184Wgenetic
27708008
LDH1_YEASTLDH1genetic
27708008
ODPB_YEASTPDB1genetic
27708008
MTC4_YEASTMTC4genetic
27708008
SGF29_YEASTSGF29genetic
27708008
KCC4_YEASTKCC4genetic
27708008
ATG22_YEASTATG22genetic
27708008
YCQ5_YEASTYCR015Cgenetic
27708008
THRC_YEASTTHR4genetic
27708008
TAH1_YEASTTAH1genetic
27708008
HCM1_YEASTHCM1genetic
27708008
RPN4_YEASTRPN4genetic
27708008
GPR1_YEASTGPR1genetic
27708008
RS29B_YEASTRPS29Bgenetic
27708008
NBP2_YEASTNBP2genetic
27708008
UME6_YEASTUME6genetic
27708008
SVF1_YEASTSVF1genetic
27708008
LSM6_YEASTLSM6genetic
27708008
RV167_YEASTRVS167genetic
27708008
PALF_YEASTRIM8genetic
27708008
PEX14_YEASTPEX14genetic
27708008
ATC1_YEASTPMR1genetic
27708008
HUR1_YEASTHUR1genetic
27708008
HOS2_YEASTHOS2genetic
27708008
YGY5_YEASTYGL235Wgenetic
27708008
RTG2_YEASTRTG2genetic
27708008
PEX8_YEASTPEX8genetic
27708008
RS23A_YEASTRPS23Agenetic
27708008
RS23B_YEASTRPS23Agenetic
27708008
UBCX_YEASTPEX4genetic
27708008
TBP7_YEASTYTA7genetic
27708008
PEX28_YEASTPEX28genetic
27708008
SOL3_YEASTSOL3genetic
27708008
YHY2_YEASTYHR182Wgenetic
27708008
AIM18_YEASTAIM18genetic
27708008
ACA2_YEASTCST6genetic
27708008
FLX1_YEASTFLX1genetic
27708008
LPLA_YEASTAIM22genetic
27708008
KHA1_YEASTKHA1genetic
27708008
BCK1_YEASTBCK1genetic
27708008
EAF6_YEASTEAF6genetic
27708008
PTM1_YEASTPTM1genetic
27708008
VPS24_YEASTVPS24genetic
27708008
MBR1_YEASTMBR1genetic
27708008
KKQ8_YEASTKKQ8genetic
27708008
CANB_YEASTCNB1genetic
27708008
YKZ1_YEASTYKR011Cgenetic
27708008
SA190_YEASTSAP190genetic
27708008
SET3_YEASTSET3genetic
27708008
PAM17_YEASTPAM17genetic
27708008
BAS1_YEASTBAS1genetic
27708008
METW_YEASTYLL058Wgenetic
27708008
RSSA2_YEASTRPS0Bgenetic
27708008
ERG3_YEASTERG3genetic
27708008
ORN_YEASTREX2genetic
27708008
IOC2_YEASTIOC2genetic
27708008
PUT1_YEASTPUT1genetic
27708008
PUS5_YEASTPUS5genetic
27708008
AP1S1_YEASTAPS1genetic
27708008
PEX13_YEASTPEX13genetic
27708008
YL224_YEASTYLR224Wgenetic
27708008
THI7_YEASTTHI7genetic
27708008
SEC22_YEASTSEC22genetic
27708008
RS30A_YEASTRPS30Agenetic
27708008
RS30B_YEASTRPS30Agenetic
27708008
NKP2_YEASTNKP2genetic
27708008
VID22_YEASTVID22genetic
27708008
RL31B_YEASTRPL31Bgenetic
27708008
CDC73_YEASTCDC73genetic
27708008
YPT7_YEASTYPT7genetic
27708008
RS3A2_YEASTRPS1Bgenetic
27708008
VPS9_YEASTVPS9genetic
27708008
HXT2_YEASTHXT2genetic
27708008
PEX12_YEASTPEX12genetic
27708008
YMS4_YEASTYMR034Cgenetic
27708008
MSN2_YEASTMSN2genetic
27708008
UBX4_YEASTUBX4genetic
27708008
MUB1_YEASTMUB1genetic
27708008
OSW5_YEASTOSW5genetic
27708008
MLH1_YEASTMLH1genetic
27708008
MRE11_YEASTMRE11genetic
27708008
DFG5_YEASTDFG5genetic
27708008
PUR1_YEASTADE4genetic
27708008
ODP2_YEASTLAT1genetic
27708008
APP1_YEASTAPP1genetic
27708008
EAF7_YEASTEAF7genetic
27708008
CDC48_YEASTCDC48physical
27385344
GCN4_YEASTGCN4physical
28230348

Drug and Disease Associations
Kegg Drug
DrugBank
There are no disease associations of PTM sites.
Regulatory Network of GCN4_YEAST

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Related Literatures of Post-Translational Modification
Phosphorylation
ReferencePubMed
"A multidimensional chromatography technology for in-depthphosphoproteome analysis.";
Albuquerque C.P., Smolka M.B., Payne S.H., Bafna V., Eng J., Zhou H.;
Mol. Cell. Proteomics 7:1389-1396(2008).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-17; THR-165 AND SER-218,AND MASS SPECTROMETRY.
"Regulation of the transcription factor Gcn4 by Pho85 cyclin PCL5.";
Shemer R., Meimoun A., Holtzman T., Kornitzer D.;
Mol. Cell. Biol. 22:5395-5404(2002).
Cited for: PHOSPHORYLATION AT THR-165.

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