ODPB_YEAST - dbPTM
ODPB_YEAST - PTM Information in dbPTM
Basic Information of Protein
UniProt ID ODPB_YEAST
UniProt AC P32473
Protein Name Pyruvate dehydrogenase E1 component subunit beta, mitochondrial
Gene Name PDB1
Organism Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast).
Sequence Length 366
Subcellular Localization Mitochondrion matrix.
Protein Description The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)..
Protein Sequence MFSRLPTSLARNVARRAPTSFVRPSAAAAALRFSSTKTMTVREALNSAMAEELDRDDDVFLIGEEVAQYNGAYKVSKGLLDRFGERRVVDTPITEYGFTGLAVGAALKGLKPIVEFMSFNFSMQAIDHVVNSAAKTHYMSGGTQKCQMVFRGPNGAAVGVGAQHSQDFSPWYGSIPGLKVLVPYSAEDARGLLKAAIRDPNPVVFLENELLYGESFEISEEALSPEFTLPYKAKIEREGTDISIVTYTRNVQFSLEAAEILQKKYGVSAEVINLRSIRPLDTEAIIKTVKKTNHLITVESTFPSFGVGAEIVAQVMESEAFDYLDAPIQRVTGADVPTPYAKELEDFAFPDTPTIVKAVKEVLSIE
Overview of Protein Modification Sites with Functional and Structural Information
Experimental Post-Translational Modification Sites

* ASA = Accessible Surface Area

Locations Modification Substrate Peptides
&
Secondary Structure
ASA (%) Reference Orthologous
Protein Cluster
47PhosphorylationTVREALNSAMAEELD
HHHHHHHHHHHHHCC
21.9224930733
77AcetylationNGAYKVSKGLLDRFG
CCCEEECHHHHHHHC
57.4724489116
772-HydroxyisobutyrylationNGAYKVSKGLLDRFG
CCCEEECHHHHHHHC
57.47-
145AcetylationYMSGGTQKCQMVFRG
CCCCCCEEEEEEEEC
26.6924489116
240PhosphorylationAKIEREGTDISIVTY
EEEEECCCEEEEEEE
25.9628889911
264AcetylationAAEILQKKYGVSAEV
HHHHHHHHHCCCEEE
33.9924489116
268PhosphorylationLQKKYGVSAEVINLR
HHHHHCCCEEEEECC
17.8524961812
276PhosphorylationAEVINLRSIRPLDTE
EEEEECCCCCCCCHH
26.5621440633
282PhosphorylationRSIRPLDTEAIIKTV
CCCCCCCHHHHHHHH
34.6922369663
287AcetylationLDTEAIIKTVKKTNH
CCHHHHHHHHHHCCC
40.9524489116
342AcetylationDVPTPYAKELEDFAF
CCCCCCHHHHHHHCC
57.9224489116
352PhosphorylationEDFAFPDTPTIVKAV
HHHCCCCCHHHHHHH
23.6717330950
354PhosphorylationFAFPDTPTIVKAVKE
HCCCCCHHHHHHHHH
40.2624961812
357AcetylationPDTPTIVKAVKEVLS
CCCHHHHHHHHHHHC
43.5424489116
360AcetylationPTIVKAVKEVLSIE-
HHHHHHHHHHHCCC-
47.1422865919

Upstream regulatory proteins (kinases for phosphorylation sites, E3 ubiquitin ligases of ubiquitination sites, ...)
Modified Location Modified Residue Modification Type of Upstream Proteins Gene Name of Upstream Proteins UniProt AC of Upstream Proteins Sources

Oops, there are no upstream regulatory protein records of ODPB_YEAST !!

Functions of PTM Sites
Modified Location Modified Residue Modification Function Reference

Oops, there are no descriptions of PTM sites of ODPB_YEAST !!

Disease-associated PTM Sites based on SAP

* Distance = the distance between SAP position and PTM sites.

Modified Location Modification Variant Position
(Distance <= 10)
Residue Change SAP Related Disease Reference

Oops, there are no SNP-PTM records of ODPB_YEAST !!

Protein-Protein Interaction
Interacting Protein Gene Name Interaction Type PPI Reference Domain-Domain Interactions
AP1M1_YEASTAPM1physical
11805826
UBP4_YEASTDOA4physical
11805826
DUR1_YEASTDUR1,2physical
11805826
ODP2_YEASTLAT1physical
11805826
DLDH_YEASTLPD1physical
11805826
ODPA_YEASTPDA1physical
11805826
ODPX_YEASTPDX1physical
11805826
PRP46_YEASTPRP46physical
11805826
RPN11_YEASTRPN11physical
11805826
TCM62_YEASTTCM62physical
11805826
YL345_YEASTYLR345Wphysical
10688190
ADY3_YEASTADY3physical
16554755
AIM23_YEASTAIM23physical
16554755
CDC73_YEASTCDC73physical
16554755
KPYK1_YEASTCDC19physical
16429126
DLDH_YEASTLPD1physical
16429126
ODPX_YEASTPDX1physical
16429126
UBP4_YEASTDOA4physical
16429126
DUR1_YEASTDUR1,2physical
16429126
ODP2_YEASTLAT1physical
16429126
ODPA_YEASTPDA1physical
16429126
PRP46_YEASTPRP46physical
16429126
SBA1_YEASTSBA1physical
18719252
ACH1_YEASTACH1genetic
21623372
ODP2_YEASTLAT1genetic
21623372
CISY2_YEASTCIT2genetic
21623372
GGPPS_YEASTBTS1genetic
21623372
ODPA_YEASTPDA1genetic
21623372
AK_YEASTHOM3genetic
21623372
ADE_YEASTAAH1genetic
21623372
PFKA1_YEASTPFK1genetic
21623372
ACON_YEASTACO1genetic
21623372
ADK_YEASTADO1genetic
21623372
ALAM_YEASTALT1genetic
21623372
ARO1_YEASTARO1genetic
21623372
ODO2_YEASTKGD2genetic
21623372
DCOR_YEASTSPE1genetic
21623372
ALDH6_YEASTALD6genetic
21623372
ADH3_YEASTADH3genetic
21623372
MDHM_YEASTMDH1genetic
21623372
ELO2_YEASTELO2genetic
21623372
ATPO_YEASTATP5genetic
21623372
PDP2_YEASTPTC6genetic
23704987
SN114_YEASTSNU114genetic
27708008
THIL_YEASTERG10genetic
27708008
KRR1_YEASTKRR1genetic
27708008
GLE1_YEASTGLE1genetic
27708008
FAL1_YEASTFAL1genetic
27708008
RRP1_YEASTRRP1genetic
27708008
UTP5_YEASTUTP5genetic
27708008
CCA1_YEASTCCA1genetic
27708008
YPT1_YEASTYPT1genetic
27708008
ACT_YEASTACT1genetic
27708008
SAD1_YEASTSAD1genetic
27708008
COPD_YEASTRET2genetic
27708008
MPPA_YEASTMAS2genetic
27708008
CDC11_YEASTCDC11genetic
27708008
RU1C_YEASTYHC1genetic
27708008
POB3_YEASTPOB3genetic
27708008
MED11_YEASTMED11genetic
27708008
GPI12_YEASTGPI12genetic
27708008
LST8_YEASTLST8genetic
27708008
DCP2_YEASTDCP2genetic
27708008
RPC6_YEASTRPC34genetic
27708008
CH10_YEASTHSP10genetic
27708008
SGT1_YEASTSGT1genetic
27708008
PROF_YEASTPFY1genetic
27708008
MED4_YEASTMED4genetic
27708008
TIM50_YEASTTIM50genetic
27708008
PRP4_YEASTPRP4genetic
27708008
PEX22_YEASTPEX22genetic
27708008
ACH1_YEASTACH1genetic
27708008
CISY2_YEASTCIT2genetic
27708008
MTU1_YEASTSLM3genetic
27708008
PEX19_YEASTPEX19genetic
27708008
ODO2_YEASTKGD2genetic
27708008
DHAS_YEASTHOM2genetic
27708008
PEX5_YEASTPEX5genetic
27708008
PEX3_YEASTPEX3genetic
27708008
STP1_YEASTSTP1genetic
27708008
AK_YEASTHOM3genetic
27708008
AROC_YEASTARO2genetic
27708008
PEX14_YEASTPEX14genetic
27708008
VID30_YEASTVID30genetic
27708008
PEX8_YEASTPEX8genetic
27708008
UBCX_YEASTPEX4genetic
27708008
VID28_YEASTVID28genetic
27708008
FYV10_YEASTFYV10genetic
27708008
PYR1_YEASTURA2genetic
27708008
PEX2_YEASTPEX2genetic
27708008
DHOM_YEASTHOM6genetic
27708008
MDHM_YEASTMDH1genetic
27708008
AATM_YEASTAAT1genetic
27708008
PEX1_YEASTPEX1genetic
27708008
PYRD_YEASTURA1genetic
27708008
PEX13_YEASTPEX13genetic
27708008
YL456_YEASTYLR456Wgenetic
27708008
PEX12_YEASTPEX12genetic
27708008
IMP2_YEASTIMP2genetic
27708008
YHM2_YEASTYHM2genetic
27708008
PEX15_YEASTPEX15genetic
27708008
HMI1_YEASTHMI1genetic
27708008
MRS2_YEASTMRS2genetic
27708008
LPE10_YEASTMFM1genetic
27708008
ALDH6_YEASTALD6genetic
27708008

Drug and Disease Associations
Kegg Drug
DrugBank
There are no disease associations of PTM sites.
Regulatory Network of ODPB_YEAST

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Related Literatures of Post-Translational Modification

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