DNLI4_YEAST - dbPTM
DNLI4_YEAST - PTM Information in dbPTM
Basic Information of Protein
UniProt ID DNLI4_YEAST
UniProt AC Q08387
Protein Name DNA ligase 4
Gene Name DNL4
Organism Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast).
Sequence Length 944
Subcellular Localization Nucleus .
Protein Description Has minor DNA joining activity. Can act on oligo(PDT)/poly(rA) substrate..
Protein Sequence MISALDSIPEPQNFAPSPDFKWLCEELFVKIHEVQINGTAGTGKSRSFKYYEIISNFVEMWRKTVGNNIYPALVLALPYRDRRIYNIKDYVLIRTICSYLKLPKNSATEQRLKDWKQRVGKGGNLSSLLVEEIAKRRAEPSSKAITIDNVNHYLDSLSGDRFASGRGFKSLVKSKPFLHCVENMSFVELKYFFDIVLKNRVIGGQEHKLLNCWHPDAQDYLSVISDLKVVTSKLYDPKVRLKDDDLSIKVGFAFAPQLAKKVNLSYEKICRTLHDDFLVEEKMDGERIQVHYMNYGESIKFFSRRGIDYTYLYGASLSSGTISQHLRFTDSVKECVLDGEMVTFDAKRRVILPFGLVKGSAKEALSFNSINNVDFHPLYMVFDLLYLNGTSLTPLPLHQRKQYLNSILSPLKNIVEIVRSSRCYGVESIKKSLEVAISLGSEGVVLKYYNSSYNVASRNNNWIKVKPEYLEEFGENLDLIVIGRDSGKKDSFMLGLLVLDEEEYKKHQGDSSEIVDHSSQEKHIQNSRRRVKKILSFCSIANGISQEEFKEIDRKTRGHWKRTSEVAPPASILEFGSKIPAEWIDPSESIVLEIKSRSLDNTETNMQKYATNCTLYGGYCKRIRYDKEWTDCYTLNDLYESRTVKSNPSYQAERSQLGLIRKKRKRVLISDSFHQNRKQLPISNIFAGLLFYVLSDYVTEDTGIRITRAELEKTIVEHGGKLIYNVILKRHSIGDVRLISCKTTTECKALIDRGYDILHPNWVLDCIAYKRLILIEPNYCFNVSQKMRAVAEKRVDCLGDSFENDISETKLSSLYKSQLSLPPMGELEIDSEVRRFPLFLFSNRIAYVPRRKISTEDDIIEMKIKLFGGKITDQQSLCNLIIIPYTDPILRKDCMNEVHEKIKEQIKASDTIPKIARVVAPEWVDHSINENCQVPEEDFPVVNY
Overview of Protein Modification Sites with Functional and Structural Information
Experimental Post-Translational Modification Sites

* ASA = Accessible Surface Area

Locations Modification Substrate Peptides
&
Secondary Structure
ASA (%) Reference Orthologous
Protein Cluster
311PhosphorylationRRGIDYTYLYGASLS
HCCCCEEEEEECCCC
7.5329650682
313PhosphorylationGIDYTYLYGASLSSG
CCCEEEEEECCCCCC
10.5529650682
633PhosphorylationDKEWTDCYTLNDLYE
CCCCCCCEEHHHHHH
19.6428889911
639PhosphorylationCYTLNDLYESRTVKS
CEEHHHHHHHCCCCC
18.0928889911
641PhosphorylationTLNDLYESRTVKSNP
EHHHHHHHCCCCCCC
21.5028889911

Upstream regulatory proteins (kinases for phosphorylation sites, E3 ubiquitin ligases of ubiquitination sites, ...)
Modified Location Modified Residue Modification Type of Upstream Proteins Gene Name of Upstream Proteins UniProt AC of Upstream Proteins Sources

Oops, there are no upstream regulatory protein records of DNLI4_YEAST !!

Functions of PTM Sites
Modified Location Modified Residue Modification Function Reference

Oops, there are no descriptions of PTM sites of DNLI4_YEAST !!

Disease-associated PTM Sites based on SAP

* Distance = the distance between SAP position and PTM sites.

Modified Location Modification Variant Position
(Distance <= 10)
Residue Change SAP Related Disease Reference

Oops, there are no SNP-PTM records of DNLI4_YEAST !!

Protein-Protein Interaction
Interacting Protein Gene Name Interaction Type PPI Reference Domain-Domain Interactions
NOP15_YEASTNOP15physical
11805837
RPF2_YEASTRPF2physical
11805837
ACON_YEASTACO1physical
11805837
H2A1_YEASTHTA1physical
11805837
NOP2_YEASTNOP2physical
11805837
RKM2_YEASTRKM2physical
11805837
NSA1_YEASTNSA1physical
11805837
ODO1_YEASTKGD1physical
11805837
CIC1_YEASTCIC1physical
11805837
IF6_YEASTTIF6physical
11805837
PESC_YEASTNOP7physical
11805837
GDE1_YEASTGDE1physical
11805837
MAK16_YEASTMAK16physical
11805837
RRT6_YEASTRRT6physical
11805837
YTM1_YEASTYTM1physical
11805837
LIF1_YEASTLIF1physical
9670033
LIF1_YEASTLIF1physical
11741545
PIF1_YEASTPIF1genetic
11429610
RAD54_YEASTRAD54genetic
15280507
SMC1_YEASTSMC1genetic
15280507
KU80_YEASTYKU80physical
16314503
PCNA_YEASTPOL30genetic
17314980
SPT4_YEASTSPT4genetic
17314980
RPC6_YEASTRPC34genetic
17314980
RAD4_YEASTRAD4genetic
17314980
HUR1_YEASTHUR1genetic
17314980
LIF1_YEASTLIF1physical
17567543
LIF1_YEASTLIF1physical
18458108
MRE11_YEASTMRE11physical
18458108
HDA2_YEASTHDA2genetic
21288874
RPN10_YEASTRPN10genetic
21288874
RAD52_YEASTRAD52genetic
21242538
RAD52_YEASTRAD52genetic
20865123
RAD52_YEASTRAD52genetic
22367032
RAD52_YEASTRAD52genetic
23222485
LIF1_YEASTLIF1physical
23825968
ATM_YEASTTEL1genetic
24699249
LIF1_YEASTLIF1physical
25457772
MCM1_YEASTMCM1genetic
27708008
BOL3_YEASTAIM1genetic
27708008
OLA1_YEASTOLA1genetic
27708008
SWC5_YEASTSWC5genetic
27708008
SHG1_YEASTSHG1genetic
27708008
RS29B_YEASTRPS29Bgenetic
27708008
RLA1_YEASTRPP1Agenetic
27708008
RS16A_YEASTRPS16Bgenetic
27708008
RS16B_YEASTRPS16Bgenetic
27708008
S2538_YEASTYDL119Cgenetic
27708008
RRP8_YEASTRRP8genetic
27708008
ARX1_YEASTARX1genetic
27708008
LCMT1_YEASTPPM1genetic
27708008
AIM11_YEASTAIM11genetic
27708008
DCV1_YEASTDCV1genetic
27708008
HXKA_YEASTHXK1genetic
27708008
NIF3_YEASTNIF3genetic
27708008
YGY5_YEASTYGL235Wgenetic
27708008
RTG2_YEASTRTG2genetic
27708008
RS25A_YEASTRPS25Agenetic
27708008
TBP7_YEASTYTA7genetic
27708008
RL8A_YEASTRPL8Agenetic
27708008
MED20_YEASTSRB2genetic
27708008
AIM18_YEASTAIM18genetic
27708008
INA22_YEASTINA22genetic
27708008
MOG1_YEASTMOG1genetic
27708008
HAP4_YEASTHAP4genetic
27708008
SHB17_YEASTSHB17genetic
27708008
PAM17_YEASTPAM17genetic
27708008
CSF1_YEASTCSF1genetic
27708008
PDR8_YEASTPDR8genetic
27708008
ARPC3_YEASTARC18genetic
27708008
COX8_YEASTCOX8genetic
27708008
SEI1_YEASTFLD1genetic
27708008
RS3A1_YEASTRPS1Agenetic
27708008
ATP18_YEASTATP18genetic
27708008
MLH1_YEASTMLH1genetic
27708008
TRI1_YEASTTRI1genetic
27708008
PET8_YEASTPET8genetic
27708008
COX5A_YEASTCOX5Agenetic
27708008
OCA2_YEASTOCA2genetic
27708008
RL9B_YEASTRPL9Bgenetic
27708008
PMS1_YEASTPMS1genetic
27708008
MKT1_YEASTMKT1genetic
27708008
VPH1_YEASTVPH1genetic
27708008
RS10A_YEASTRPS10Agenetic
27708008
TGS1_YEASTTGS1genetic
27708008
NAA30_YEASTMAK3genetic
27708008
NHP6A_YEASTNHP6Agenetic
27708008
CDC24_YEASTCDC24genetic
27708008
ERD2_YEASTERD2genetic
27708008
SEC17_YEASTSEC17genetic
27708008
GLE1_YEASTGLE1genetic
27708008
FAL1_YEASTFAL1genetic
27708008
PSB3_YEASTPUP3genetic
27708008
GNA1_YEASTGNA1genetic
27708008
MOB2_YEASTMOB2genetic
27708008
ACT_YEASTACT1genetic
27708008
CDC14_YEASTCDC14genetic
27708008
RPN12_YEASTRPN12genetic
27708008
CDC20_YEASTCDC20genetic
27708008
SMD1_YEASTSMD1genetic
27708008
RRP41_YEASTSKI6genetic
27708008
FDFT_YEASTERG9genetic
27708008
MET30_YEASTMET30genetic
27708008
DSN1_YEASTDSN1genetic
27708008
CDC6_YEASTCDC6genetic
27708008
SC61A_YEASTSEC61genetic
27708008
ORC1_YEASTORC1genetic
27708008
GPI12_YEASTGPI12genetic
27708008
RPC6_YEASTRPC34genetic
27708008
TIM23_YEASTTIM23genetic
27708008
DYR_YEASTDFR1genetic
27708008
MDM10_YEASTMDM10genetic
27708008
ATC3_YEASTDRS2genetic
27708008
GEM1_YEASTGEM1genetic
27708008
SLA1_YEASTSLA1genetic
27708008
RL19A_YEASTRPL19Bgenetic
27708008
RL19B_YEASTRPL19Bgenetic
27708008
URA7_YEASTURA7genetic
27708008
PP2C3_YEASTPTC3genetic
27708008
MUM2_YEASTMUM2genetic
27708008
TPS1_YEASTTPS1genetic
27708008
CCZ1_YEASTCCZ1genetic
27708008
AIM4_YEASTAIM4genetic
27708008
MTC4_YEASTMTC4genetic
27708008
STE50_YEASTSTE50genetic
27708008
RV161_YEASTRVS161genetic
27708008
PAT1_YEASTPAT1genetic
27708008
RL13A_YEASTRPL13Agenetic
27708008
QRI7_YEASTQRI7genetic
27708008
CRD1_YEASTCRD1genetic
27708008
PAR32_YEASTPAR32genetic
27708008
RM01_YEASTMRPL1genetic
27708008
DHAS_YEASTHOM2genetic
27708008
H2A1_YEASTHTA1genetic
27708008
MNN10_YEASTMNN10genetic
27708008
VHS1_YEASTVHS1genetic
27708008
SWR1_YEASTSWR1genetic
27708008
ESC2_YEASTESC2genetic
27708008
SHE9_YEASTSHE9genetic
27708008
CP56_YEASTDIT2genetic
27708008
STP1_YEASTSTP1genetic
27708008
PKH3_YEASTPKH3genetic
27708008
AK_YEASTHOM3genetic
27708008
SCS2_YEASTSCS2genetic
27708008
PALF_YEASTRIM8genetic
27708008
ATC1_YEASTPMR1genetic
27708008
HUR1_YEASTHUR1genetic
27708008
HOS2_YEASTHOS2genetic
27708008
MDM34_YEASTMDM34genetic
27708008
HXKB_YEASTHXK2genetic
27708008
PEX31_YEASTPEX31genetic
27708008
PFD3_YEASTPAC10genetic
27708008
VMA21_YEASTVMA21genetic
27708008
SERB_YEASTSER2genetic
27708008
PHB2_YEASTPHB2genetic
27708008
OPI1_YEASTOPI1genetic
27708008
MIP6_YEASTMIP6genetic
27708008
HTD2_YEASTHTD2genetic
27708008
SDS3_YEASTSDS3genetic
27708008
FMC1_YEASTFMC1genetic
27708008
COX5B_YEASTCOX5Bgenetic
27708008
FLX1_YEASTFLX1genetic
27708008
YIQ3_YEASTYIL163Cgenetic
27708008
VPS53_YEASTVPS53genetic
27708008
MHP1_YEASTMHP1genetic
27708008
PBS2_YEASTPBS2genetic
27708008
RS21B_YEASTRPS21Bgenetic
27708008
CBF1_YEASTCBF1genetic
27708008
RL14A_YEASTRPL14Agenetic
27708008
IXR1_YEASTIXR1genetic
27708008
VPS24_YEASTVPS24genetic
27708008
MDM35_YEASTMDM35genetic
27708008
FABG_YEASTOAR1genetic
27708008
CTK1_YEASTCTK1genetic
27708008
RM49_YEASTMRP49genetic
27708008
NNK1_YEASTNNK1genetic
27708008
VPS51_YEASTVPS51genetic
27708008
COX12_YEASTCOX12genetic
27708008
HOG1_YEASTHOG1genetic
27708008
SRN2_YEASTSRN2genetic
27708008
ACE2_YEASTACE2genetic
27708008
UPS1_YEASTUPS1genetic
27708008
PFD6_YEASTYKE2genetic
27708008
LIPB_YEASTLIP2genetic
27708008
UBC12_YEASTUBC12genetic
27708008
ELO3_YEASTELO3genetic
27708008
VID22_YEASTVID22genetic
27708008
AP1_YEASTYAP1genetic
27708008
VPS71_YEASTVPS71genetic
27708008
CTK3_YEASTCTK3genetic
27708008
SUB1_YEASTSUB1genetic
27708008
MGR3_YEASTMGR3genetic
27708008
PKR1_YEASTPKR1genetic
27708008
COX7_YEASTCOX7genetic
27708008
SAP30_YEASTSAP30genetic
27708008
TOM7_YEASTTOM7genetic
27708008
MKS1_YEASTMKS1genetic
27708008
APP1_YEASTAPP1genetic
27708008
VPS27_YEASTVPS27genetic
27708008
ATP23_YEASTATP23genetic
27708008
COQ2_YEASTCOQ2genetic
27708008
SERC_YEASTSER1genetic
27708008
LIPA_YEASTLIP5genetic
27708008
RAX1_YEASTRAX1genetic
27708008
MSC6_YEASTMSC6genetic
27708008
VTS1_YEASTVTS1genetic
27708008
PDE2_YEASTPDE2genetic
27708008
RAD1_YEASTRAD1genetic
27708008
LGE1_YEASTLGE1genetic
27708008
MGR2_YEASTMGR2genetic
27708008
HSP7F_YEASTSSE1genetic
27708008
ATG41_YEASTICY2genetic
27708008
EAF3_YEASTEAF3genetic
27708008
THP3_YEASTTHP3genetic
27708008
COQ6_YEASTCOQ6genetic
27453043
HUG1_YEASTHUG1genetic
27453043
VPS1_YEASTVPS1genetic
27453043
YPK9_YEASTYPK9genetic
27453043
BUB1_YEASTBUB1genetic
27453043

Drug and Disease Associations
Kegg Drug
DrugBank
There are no disease associations of PTM sites.
Regulatory Network of DNLI4_YEAST

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Related Literatures of Post-Translational Modification

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