VAM3_YEAST - dbPTM
VAM3_YEAST - PTM Information in dbPTM
Basic Information of Protein
UniProt ID VAM3_YEAST
UniProt AC Q12241
Protein Name Syntaxin VAM3
Gene Name VAM3
Organism Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast).
Sequence Length 283
Subcellular Localization Vacuole membrane
Single-pass type IV membrane protein.
Protein Description Required for vacuolar assembly. Provides the t-SNARE function in a late step of the vacuolar assembly. Required for homotypic vacuole membrane fusion, autophagy and fusion of biosynthetic transport vesicles with the vacuole. Required for the delivery of alpha-factor receptor-ligand complexes to the vacuole..
Protein Sequence MSFFDIEAQSSKGNSQQEPQFSTNQKTKELSNLIETFAEQSRVLEKECTKIGSKRDSKELRYKIETELIPNCTSVRDKIESNILIHQNGKLSADFKNLKTKYQSLQQSYNQRKSLFPLKTPISPGTSKERKDIHPRTEAVRQDPESSYISIKVNEQSPLLHNEGQHQLQLQEEQEQQQQGLSQEELDFQTIIHQERSQQIGRIHTAVQEVNAIFHQLGSLVKEQGEQVTTIDENISHLHDNMQNANKQLTRADQHQRDRNKCGKVTLIIIIVVCMVVLLAVLS
Overview of Protein Modification Sites with Functional and Structural Information
Experimental Post-Translational Modification Sites

* ASA = Accessible Surface Area

Locations Modification Substrate Peptides
&
Secondary Structure
ASA (%) Reference Orthologous
Protein Cluster
10PhosphorylationFFDIEAQSSKGNSQQ
CCCEEECCCCCCCCC
40.8528889911
53PhosphorylationKECTKIGSKRDSKEL
HHHHHCCCCCCCHHH
28.1727017623
96AcetylationGKLSADFKNLKTKYQ
CCCCHHHHHHHHHHH
63.0224489116
108PhosphorylationKYQSLQQSYNQRKSL
HHHHHHHHHHHCHHC
17.0628889911
123PhosphorylationFPLKTPISPGTSKER
CCCCCCCCCCCCHHH
20.6222369663
126PhosphorylationKTPISPGTSKERKDI
CCCCCCCCCHHHCCC
39.7522369663
127PhosphorylationTPISPGTSKERKDIH
CCCCCCCCHHHCCCC
38.1322369663
137PhosphorylationRKDIHPRTEAVRQDP
HCCCCCCCHHHHCCC
32.5224961812
146PhosphorylationAVRQDPESSYISIKV
HHHCCCCCCCEEEEE
33.5522369663
147PhosphorylationVRQDPESSYISIKVN
HHCCCCCCCEEEEEC
25.4822369663
148PhosphorylationRQDPESSYISIKVNE
HCCCCCCCEEEEECC
14.1522369663
150PhosphorylationDPESSYISIKVNEQS
CCCCCCEEEEECCCC
14.2322369663
229PhosphorylationKEQGEQVTTIDENIS
HHCCCEEEECCHHHH
20.0924961812
230PhosphorylationEQGEQVTTIDENISH
HCCCEEEECCHHHHH
27.8124961812
236PhosphorylationTTIDENISHLHDNMQ
EECCHHHHHHHHHHH
31.4224961812

Upstream regulatory proteins (kinases for phosphorylation sites, E3 ubiquitin ligases of ubiquitination sites, ...)
Modified Location Modified Residue Modification Type of Upstream Proteins Gene Name of Upstream Proteins UniProt AC of Upstream Proteins Sources

Oops, there are no upstream regulatory protein records of VAM3_YEAST !!

Functions of PTM Sites
Modified Location Modified Residue Modification Function Reference

Oops, there are no descriptions of PTM sites of VAM3_YEAST !!

Disease-associated PTM Sites based on SAP

* Distance = the distance between SAP position and PTM sites.

Modified Location Modification Variant Position
(Distance <= 10)
Residue Change SAP Related Disease Reference

Oops, there are no SNP-PTM records of VAM3_YEAST !!

Protein-Protein Interaction
Interacting Protein Gene Name Interaction Type PPI Reference Domain-Domain Interactions
NYV1_YEASTNYV1physical
10725336
SEC17_YEASTSEC17physical
9628864
SEC17_YEASTSEC17physical
10385523
SEC17_YEASTSEC17physical
9425154
NYV1_YEASTNYV1physical
11694574
NYV1_YEASTNYV1physical
11349128
VAM7_YEASTVAM7physical
11349128
VTI1_YEASTVTI1physical
11349128
YKT6_YEASTYKT6physical
11349128
VPS41_YEASTVPS41physical
10725336
VAM3_YEASTVAM3physical
10725336
YKT6_YEASTYKT6physical
10725336
NYV1_YEASTNYV1physical
10385523
NYV1_YEASTNYV1physical
9425154
VAM7_YEASTVAM7physical
10385523
VTI1_YEASTVTI1physical
10385523
YKT6_YEASTYKT6physical
10385523
PEP3_YEASTPEP3physical
11030345
VPS33_YEASTVPS33physical
11030345
SUR1_YEASTSUR1physical
14583628
NYV1_YEASTNYV1physical
12427733
VTI1_YEASTVTI1physical
12427733
YKT6_YEASTYKT6physical
12427733
VTI1_YEASTVTI1physical
9427746
VTI1_YEASTVTI1physical
14662743
NYV1_YEASTNYV1physical
14662743
PEP3_YEASTPEP3physical
14662743
VPS33_YEASTVPS33physical
11224573
VTI1_YEASTVTI1physical
11001059
NYV1_YEASTNYV1physical
11001059
AP3B_YEASTAPL6physical
10559961
VPS1_YEASTVPS1physical
15550248
SEC17_YEASTSEC17physical
15550248
AP3D_YEASTAPL5physical
10559961
CCZ1_YEASTCCZ1physical
14662743
MON1_YEASTMON1physical
14662743
SEC17_YEASTSEC17physical
14662743
SEC18_YEASTSEC18physical
14662743
VAM7_YEASTVAM7physical
14662743
YPT7_YEASTYPT7physical
14662743
PEP12_YEASTPEP12genetic
9245783
VAM7_YEASTVAM7genetic
9710615
VPS16_YEASTVPS16genetic
11030345
PEP3_YEASTPEP3genetic
11030345
VPS33_YEASTVPS33genetic
11030345
VPS33_YEASTVPS33genetic
9245783
PEP12_YEASTPEP12genetic
11422941
NYV1_YEASTNYV1physical
15889152
VTI1_YEASTVTI1physical
15889152
YKT6_YEASTYKT6physical
15889152
VPS41_YEASTVPS41physical
15889152
VAM6_YEASTVAM6physical
15889152
PEP5_YEASTPEP5physical
15889152
PEP3_YEASTPEP3physical
15889152
VPS16_YEASTVPS16physical
15889152
VPS33_YEASTVPS33physical
15889152
SEC17_YEASTSEC17physical
15889152
MMR1_YEASTMMR1genetic
17314980
RGP1_YEASTRGP1genetic
17314980
UBP3_YEASTUBP3genetic
17314980
COG8_YEASTCOG8genetic
17314980
ELP2_YEASTELP2genetic
17314980
RPC10_YEASTRPC11genetic
17314980
CTR9_YEASTCTR9genetic
17314980
JHD2_YEASTJHD2genetic
17314980
2A5D_YEASTRTS1genetic
17314980
MED11_YEASTMED11genetic
17314980
VPS70_YEASTVPS70genetic
17314980
SGF29_YEASTSGF29genetic
17314980
MMS22_YEASTMMS22genetic
17314980
YPT6_YEASTYPT6genetic
17314980
RFC4_YEASTRFC4genetic
17314980
NOT2_YEASTCDC36genetic
17314980
RAD3_YEASTRAD3genetic
17314980
PUS3_YEASTDEG1genetic
17314980
IOC4_YEASTIOC4genetic
17314980
DNLI1_YEASTCDC9genetic
17314980
TFB1_YEASTTFB1genetic
17314980
TAF1_YEASTTAF1genetic
17314980
RUVB1_YEASTRVB1genetic
17314980
ASF1_YEASTASF1genetic
17314980
AF9_YEASTYAF9genetic
17314980
MON1_YEASTMON1genetic
17314980
TAF13_YEASTTAF13genetic
17314980
CDC73_YEASTCDC73genetic
17314980
LSM1_YEASTLSM1genetic
17314980
SA155_YEASTSAP155genetic
17314980
LSM7_YEASTLSM7genetic
17314980
VPS8_YEASTVPS8genetic
17314980
SPT8_YEASTSPT8genetic
17314980
PFD5_YEASTGIM5genetic
17314980
FAB1_YEASTFAB1genetic
17314980
SPT3_YEASTSPT3genetic
17314980
ARD1_YEASTARD1genetic
17314980
MTC6_YEASTMTC6genetic
17314980
VID22_YEASTVID22genetic
17314980
TAF9_YEASTTAF9genetic
17314980
IWR1_YEASTIWR1genetic
17314980
VAM3_YEASTVAM3physical
16768461
NYV1_YEASTNYV1physical
16768461
VAM7_YEASTVAM7physical
16768461
VTI1_YEASTVTI1physical
16768461
ARF1_YEASTARF1physical
17522384
GEM1_YEASTGEM1genetic
20093466
SWC3_YEASTSWC3genetic
20093466
MDM10_YEASTMDM10genetic
20093466
VPS8_YEASTVPS8genetic
20093466
ARL1_YEASTARL1genetic
20093466
DER1_YEASTDER1genetic
20093466
ERS1_YEASTERS1genetic
20093466
INO2_YEASTINO2genetic
20093466
NUM1_YEASTNUM1genetic
20093466
PAC11_YEASTPAC11genetic
20093466
EMI2_YEASTEMI2genetic
20093466
BST1_YEASTBST1genetic
20093466
PIB2_YEASTPIB2genetic
20093466
COG7_YEASTCOG7genetic
20093466
PUR4_YEASTADE6genetic
20093466
CHO2_YEASTCHO2genetic
20093466
CBP4_YEASTCBP4genetic
20093466
RL8A_YEASTRPL8Agenetic
20093466
ARP1_YEASTARP1genetic
20093466
SYS1_YEASTSYS1genetic
20093466
MRX12_YEASTYJR003Cgenetic
20093466
VPS51_YEASTVPS51genetic
20093466
DYHC_YEASTDYN1genetic
20093466
GPT2_YEASTGPT2genetic
20093466
LDB18_YEASTLDB18genetic
20093466
MMM1_YEASTMMM1genetic
20093466
AVL9_YEASTAVL9genetic
20093466
MMR1_YEASTMMR1genetic
20093466
DCR2_YEASTDCR2genetic
20093466
MSC1_YEASTMSC1genetic
20093466
VPS9_YEASTVPS9genetic
20093466
COG8_YEASTCOG8genetic
20093466
ERG6_YEASTERG6genetic
20093466
MVP1_YEASTMVP1genetic
20093466
JNM1_YEASTJNM1genetic
20093466
DYN3_YEASTDYN3genetic
20093466
INO4_YEASTINO4genetic
20093466
MDM12_YEASTMDM12genetic
20093466
PHO80_YEASTPHO80genetic
20093466
KIN4_YEASTKIN4genetic
20093466
VPH1_YEASTVPH1genetic
20093466
DGK1_YEASTDGK1genetic
20093466
PDE2_YEASTPDE2genetic
20093466
NIP80_YEASTNIP100genetic
20093466
ARL3_YEASTARL3genetic
20093466
NYV1_YEASTNYV1physical
20473271
SEC17_YEASTSEC17physical
20473271
ATG1_YEASTATG1genetic
20065092
COG2_YEASTCOG2genetic
20065092
NYV1_YEASTNYV1physical
20462954
SRS2_YEASTSRS2genetic
21459050
YKT6_YEASTYKT6physical
21613544
NYV1_YEASTNYV1physical
21613544
VPS33_YEASTVPS33physical
21613544
VPS16_YEASTVPS16physical
21613544
VPS41_YEASTVPS41physical
21613544
NYV1_YEASTNYV1physical
21987819
NYV1_YEASTNYV1physical
22272185
VAM7_YEASTVAM7physical
22272185
VTI1_YEASTVTI1physical
22272185
YPK9_YEASTYPK9genetic
22457822
NYV1_YEASTNYV1physical
22754631
HSP71_YEASTSSA1physical
22940862
HOT1_YEASTHOT1physical
22875988
VAM7_YEASTVAM7physical
22875988
SEC22_YEASTSEC22physical
22875988
SSO2_YEASTSSO2physical
22875988
YKT6_YEASTYKT6physical
22875988
VPS41_YEASTVPS41physical
23051737
PEP5_YEASTPEP5physical
23051737
VPS33_YEASTVPS33physical
23051737
NYV1_YEASTNYV1physical
23591871
VPS1_YEASTVPS1physical
23591871
VPH1_YEASTVPH1genetic
23891562
PSD1_YEASTPSD1genetic
23891562
GET2_YEASTGET2genetic
23891562
GDA1_YEASTGDA1genetic
23891562
GLO3_YEASTGLO3genetic
23891562
ERV14_YEASTERV14genetic
23891562
GOSR1_YEASTGOS1genetic
23891562
ARL1_YEASTARL1genetic
23891562
SYS1_YEASTSYS1genetic
23891562
ARL3_YEASTARL3genetic
23891562
RGP1_YEASTRGP1genetic
23891562
RIC1_YEASTRIC1genetic
23891562
YPT6_YEASTYPT6genetic
23891562
COG8_YEASTCOG8genetic
23891562
COG6_YEASTCOG6genetic
23891562
YEF3_YEASTYEL043Wgenetic
23891562
NNF2_YEASTNNF2genetic
23891562
VPS10_YEASTPEP1genetic
23891562
VPS60_YEASTVPS60genetic
23891562
VPS1_YEASTVPS1genetic
23891562
VPS8_YEASTVPS8genetic
23891562
VPS38_YEASTVPS38genetic
23891562
BECN1_YEASTVPS30genetic
23891562
MON2_YEASTMON2genetic
23891562
ERG26_YEASTERG26genetic
23891562
PACC_YEASTRIM101genetic
23891562
PALF_YEASTRIM8genetic
23891562
PALH_YEASTRIM21genetic
23891562
ECM14_YEASTECM14genetic
23891562
FEN1_YEASTRAD27genetic
23891562
PHO88_YEASTPHO88genetic
23891562
BL1S1_YEASTBLS1genetic
23891562
SCH9_YEASTSCH9genetic
23891562
NYV1_YEASTNYV1physical
24471450
PEP5_YEASTPEP5physical
24471450
VPS1_YEASTVPS1physical
24471450
NYV1_YEASTNYV1physical
23438067
VAM7_YEASTVAM7physical
23438067
VPS33_YEASTVPS33physical
23438067
VTI1_YEASTVTI1physical
23776654
VAM7_YEASTVAM7physical
23776654
NYV1_YEASTNYV1physical
23776654
NYV1_YEASTNYV1physical
24088569
VPS8_YEASTVPS8genetic
27708008
CCZ1_YEASTCCZ1genetic
27708008
VAM6_YEASTVAM6genetic
27708008
MON1_YEASTMON1genetic
27708008
POP7_YEASTPOP7genetic
27708008
TAF5_YEASTTAF5genetic
27708008
CDC53_YEASTCDC53genetic
27708008
FAL1_YEASTFAL1genetic
27708008
MAK21_YEASTMAK21genetic
27708008
LCB2_YEASTLCB2genetic
27708008
CDC37_YEASTCDC37genetic
27708008
RIFK_YEASTFMN1genetic
27708008
COG3_YEASTCOG3genetic
27708008
ACT_YEASTACT1genetic
27708008
RSC8_YEASTRSC8genetic
27708008
TAF1_YEASTTAF1genetic
27708008
BRL1_YEASTBRL1genetic
27708008
STS1_YEASTSTS1genetic
27708008
ARP4_YEASTARP4genetic
27708008
DPB11_YEASTDPB11genetic
27708008
IF2A_YEASTSUI2genetic
27708008
PRP16_YEASTPRP16genetic
27708008
MED14_YEASTRGR1genetic
27708008
CDC25_YEASTCDC25genetic
27708008
TAF7_YEASTTAF7genetic
27708008
LIP1_YEASTLIP1genetic
27708008
DCP2_YEASTDCP2genetic
27708008
NOG2_YEASTNOG2genetic
27708008
MYO2_YEASTMYO2genetic
27708008
MOT1_YEASTMOT1genetic
27708008
NAB3_YEASTNAB3genetic
27708008
IF6_YEASTTIF6genetic
27708008
MED10_YEASTNUT2genetic
27708008
MDM10_YEASTMDM10genetic
27708008
GEM1_YEASTGEM1genetic
27708008
ARL1_YEASTARL1genetic
27708008
RL13A_YEASTRPL13Agenetic
27708008
INO2_YEASTINO2genetic
27708008
PIB2_YEASTPIB2genetic
27708008
MDM34_YEASTMDM34genetic
27708008
GOSR1_YEASTGOS1genetic
27708008
PTH_YEASTPTH1genetic
27708008
SYS1_YEASTSYS1genetic
27708008
VPS53_YEASTVPS53genetic
27708008
CBF1_YEASTCBF1genetic
27708008
CYT2_YEASTCYT2genetic
27708008
VPS51_YEASTVPS51genetic
27708008
MMM1_YEASTMMM1genetic
27708008
AVL9_YEASTAVL9genetic
27708008
MMR1_YEASTMMR1genetic
27708008
VPS38_YEASTVPS38genetic
27708008
VPS9_YEASTVPS9genetic
27708008
BECN1_YEASTVPS30genetic
27708008
SEC18_YEASTSEC18physical
27252384
SEC17_YEASTSEC17physical
27252384
NYV1_YEASTNYV1physical
27252384
VTI1_YEASTVTI1physical
28925353
NYV1_YEASTNYV1physical
28925353
SEC17_YEASTSEC17physical
28925353
VPS41_YEASTVPS41physical
25564619
VPS16_YEASTVPS16physical
25564619
VAM6_YEASTVAM6physical
28148647
VPS41_YEASTVPS41physical
28148647
PEP3_YEASTPEP3physical
28148647
VPS33_YEASTVPS33physical
28148647
PEP5_YEASTPEP5physical
28148647
VPS16_YEASTVPS16physical
28148647
NYV1_YEASTNYV1physical
28148647
VAM7_YEASTVAM7physical
28148647
VTI1_YEASTVTI1physical
28148647

Drug and Disease Associations
Kegg Drug
DrugBank
There are no disease associations of PTM sites.
Regulatory Network of VAM3_YEAST

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Related Literatures of Post-Translational Modification
Phosphorylation
ReferencePubMed
"A multidimensional chromatography technology for in-depthphosphoproteome analysis.";
Albuquerque C.P., Smolka M.B., Payne S.H., Bafna V., Eng J., Zhou H.;
Mol. Cell. Proteomics 7:1389-1396(2008).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-108, AND MASSSPECTROMETRY.

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