PDX3_YEAST - dbPTM
PDX3_YEAST - PTM Information in dbPTM
Basic Information of Protein
UniProt ID PDX3_YEAST
UniProt AC P38075
Protein Name Pyridoxamine 5'-phosphate oxidase
Gene Name PDX3
Organism Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast).
Sequence Length 228
Subcellular Localization Mitochondrion intermembrane space .
Protein Description Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP)..
Protein Sequence MTKQAEETQKPIIFAPETYQYDKFTLNEKQLTDDPIDLFTKWFNEAKEDPRETLPEAITFSSAELPSGRVSSRILLFKELDHRGFTIYSNWGTSRKAHDIATNPNAAIVFFWKDLQRQVRVEGITEHVNRETSERYFKTRPRGSKIGAWASRQSDVIKNREELDELTQKNTERFKDAEDIPCPDYWGGLRIVPLEIEFWQGRPSRLHDRFVYRRKTENDPWKVVRLAP
Overview of Protein Modification Sites with Functional and Structural Information
Experimental Post-Translational Modification Sites

* ASA = Accessible Surface Area

Locations Modification Substrate Peptides
&
Secondary Structure
ASA (%) Reference Orthologous
Protein Cluster
10AcetylationKQAEETQKPIIFAPE
CCCHHHCCCEEECCC
45.6724489116
18PhosphorylationPIIFAPETYQYDKFT
CEEECCCCCCCCCCC
18.1822369663
19PhosphorylationIIFAPETYQYDKFTL
EEECCCCCCCCCCCC
11.9222369663
21PhosphorylationFAPETYQYDKFTLNE
ECCCCCCCCCCCCCH
15.6422369663
25PhosphorylationTYQYDKFTLNEKQLT
CCCCCCCCCCHHHCC
34.1222369663
29UbiquitinationDKFTLNEKQLTDDPI
CCCCCCHHHCCCCHH
49.9224961812
29AcetylationDKFTLNEKQLTDDPI
CCCCCCHHHCCCCHH
49.9224489116
67PhosphorylationFSSAELPSGRVSSRI
CCCCCCCCCCCCCEE
52.4326447709
71PhosphorylationELPSGRVSSRILLFK
CCCCCCCCCEEEEEE
16.7326447709
72PhosphorylationLPSGRVSSRILLFKE
CCCCCCCCEEEEEEE
22.0826447709
78AcetylationSSRILLFKELDHRGF
CCEEEEEEECCCCCE
58.2924489116
86PhosphorylationELDHRGFTIYSNWGT
ECCCCCEEEECCCCC
23.1028889911
88PhosphorylationDHRGFTIYSNWGTSR
CCCCEEEECCCCCCC
7.9028889911
94PhosphorylationIYSNWGTSRKAHDIA
EECCCCCCCCHHHHC
28.0428889911
151PhosphorylationSKIGAWASRQSDVIK
CCCCHHHHCCCHHCC
21.8322369663
154PhosphorylationGAWASRQSDVIKNRE
CHHHHCCCHHCCCHH
32.5122369663
158AcetylationSRQSDVIKNREELDE
HCCCHHCCCHHHHHH
50.2124489116
169AcetylationELDELTQKNTERFKD
HHHHHHHHHHHHHCC
61.6824489116
175AcetylationQKNTERFKDAEDIPC
HHHHHHHCCCCCCCC
63.3524489116
204PhosphorylationEFWQGRPSRLHDRFV
EEECCCCCCCCCEEE
46.2222369663
222AcetylationKTENDPWKVVRLAP-
CCCCCCCCEEEECC-
35.9224489116

Upstream regulatory proteins (kinases for phosphorylation sites, E3 ubiquitin ligases of ubiquitination sites, ...)
Modified Location Modified Residue Modification Type of Upstream Proteins Gene Name of Upstream Proteins UniProt AC of Upstream Proteins Sources

Oops, there are no upstream regulatory protein records of PDX3_YEAST !!

Functions of PTM Sites
Modified Location Modified Residue Modification Function Reference

Oops, there are no descriptions of PTM sites of PDX3_YEAST !!

Disease-associated PTM Sites based on SAP

* Distance = the distance between SAP position and PTM sites.

Modified Location Modification Variant Position
(Distance <= 10)
Residue Change SAP Related Disease Reference

Oops, there are no SNP-PTM records of PDX3_YEAST !!

Protein-Protein Interaction
Interacting Protein Gene Name Interaction Type PPI Reference Domain-Domain Interactions
SRS2_YEASTSRS2genetic
21459050
PDX3_YEASTPDX3physical
26327315
NSE4_YEASTNSE4genetic
27708008
PRS7_YEASTRPT1genetic
27708008
RPC6_YEASTRPC34genetic
27708008
BOL3_YEASTAIM1genetic
27708008
MGMT_YEASTMGT1genetic
27708008
YD018_YEASTYDR018Cgenetic
27708008
MRH1_YEASTMRH1genetic
27708008
MRX8_YEASTYDR336Wgenetic
27708008
ULI1_YEASTULI1genetic
27708008
PUF4_YEASTPUF4genetic
27708008
YBP2_YEASTYBP2genetic
27708008
COM1_YEASTSAE2genetic
27708008
CGS6_YEASTCLB6genetic
27708008
FYV8_YEASTFYV8genetic
27708008
OCA5_YEASTOCA5genetic
27708008
ADY1_YEASTPFS1genetic
27708008
CUL8_YEASTRTT101genetic
27708008
PIR5_YEASTYJL160Cgenetic
27708008
IXR1_YEASTIXR1genetic
27708008
YKH7_YEASTYKL077Wgenetic
27708008
CWP2_YEASTCWP2genetic
27708008
AMPL_YEASTAPE1genetic
27708008
RNP1_YEASTRNP1genetic
27708008
PUR91_YEASTADE16genetic
27708008
ERG3_YEASTERG3genetic
27708008
YL126_YEASTYLR126Cgenetic
27708008
DCN1_YEASTDCN1genetic
27708008
TOP3_YEASTTOP3genetic
27708008
SEC72_YEASTSEC72genetic
27708008
GAS2_YEASTGAS2genetic
27708008
STE23_YEASTSTE23genetic
27708008
RL31B_YEASTRPL31Bgenetic
27708008
YPT7_YEASTYPT7genetic
27708008
AMPD_YEASTAMD1genetic
27708008
ERV41_YEASTERV41genetic
27708008
YMS4_YEASTYMR034Cgenetic
27708008
ATC8_YEASTDNF3genetic
27708008
MRE11_YEASTMRE11genetic
27708008
YM71_YEASTYMR226Cgenetic
27708008
PRA1_YEASTYIP3genetic
27708008
YNF0_YEASTYNL050Cgenetic
27708008
ARE2_YEASTARE2genetic
27708008
RLA2_YEASTRPP2Agenetic
27708008
HST3_YEASTHST3genetic
27708008
TCB1_YEASTTCB1genetic
27708008
CEX1_YEASTCEX1genetic
27708008
ATG40_YEASTYOR152Cgenetic
27708008
GET4_YEASTGET4genetic
27708008
IES4_YEASTIES4genetic
27708008
DGK1_YEASTDGK1genetic
27708008
ALDH6_YEASTALD6genetic
27708008
RL21B_YEASTRPL21Bgenetic
27708008
SSU1_YEASTSSU1genetic
27708008
BECN1_YEASTVPS30genetic
27708008
CUP9_YEASTCUP9genetic
27708008
UIP4_YEASTUIP4genetic
27708008
PRM3_YEASTPRM3genetic
27708008
THI6_YEASTTHI6genetic
27708008
ALG5_YEASTALG5genetic
27708008
SRO7_YEASTSRO7genetic
27708008
RGC1_YEASTRGC1genetic
27708008
THI22_YEASTTHI22genetic
27708008
TIM22_YEASTTIM22genetic
27708008
TFB1_YEASTTFB1genetic
27708008
SSL1_YEASTSSL1genetic
27708008
ARP9_YEASTARP9genetic
27708008
RLP7_YEASTRLP7genetic
27708008
NIP7_YEASTNIP7genetic
27708008
DIB1_YEASTDIB1genetic
27708008
ORC4_YEASTORC4genetic
27708008
DEP1_YEASTDEP1genetic
27708008
PRM9_YEASTPRM9genetic
27708008
RPN4_YEASTRPN4genetic
27708008
MBP1_YEASTMBP1genetic
27708008
NRG1_YEASTNRG1genetic
27708008
RAD55_YEASTRAD55genetic
27708008
TRS85_YEASTTRS85genetic
27708008
DPB4_YEASTDPB4genetic
27708008
ARO1_YEASTARO1genetic
27708008
WDR59_YEASTMTC5genetic
27708008
YD132_YEASTYDR132Cgenetic
27708008
GIR2_YEASTGIR2genetic
27708008
PHM6_YEASTPHM6genetic
27708008
CYPD_YEASTCPR5genetic
27708008
SXM1_YEASTSXM1genetic
27708008
YD476_YEASTYDR476Cgenetic
27708008
DLDH_YEASTLPD1genetic
27708008
RIM15_YEASTRIM15genetic
27708008
GCN20_YEASTGCN20genetic
27708008
PALF_YEASTRIM8genetic
27708008
HXKB_YEASTHXK2genetic
27708008
PEX31_YEASTPEX31genetic
27708008
6PGD2_YEASTGND2genetic
27708008
BGL2_YEASTBGL2genetic
27708008
SLT2_YEASTSLT2genetic
27708008
FMO1_YEASTFMO1genetic
27708008
NVJ1_YEASTNVJ1genetic
27708008
RPN10_YEASTRPN10genetic
27708008
PRM2_YEASTPRM2genetic
27708008
SDS3_YEASTSDS3genetic
27708008
HPM1_YEASTHPM1genetic
27708008
SDHX_YEASTYJL045Wgenetic
27708008
DLS1_YEASTDLS1genetic
27708008
PYR1_YEASTURA2genetic
27708008
VPS35_YEASTVPS35genetic
27708008
HS150_YEASTHSP150genetic
27708008
DENR_YEASTTMA22genetic
27708008
3HAO_YEASTBNA1genetic
27708008
DPOD3_YEASTPOL32genetic
27708008
MOG1_YEASTMOG1genetic
27708008
TDA4_YEASTTDA4genetic
27708008
ENT3_YEASTENT3genetic
27708008
MNS1_YEASTMNS1genetic
27708008
DAN1_YEASTDAN1genetic
27708008
BYE1_YEASTBYE1genetic
27708008
BAS1_YEASTBAS1genetic
27708008
RT109_YEASTRTT109genetic
27708008
KNS1_YEASTKNS1genetic
27708008
ATG10_YEASTATG10genetic
27708008
FPS1_YEASTFPS1genetic
27708008
UBR2_YEASTUBR2genetic
27708008
LAM6_YEASTYLR072Wgenetic
27708008
ALAM_YEASTALT1genetic
27708008
RNH2C_YEASTRNH203genetic
27708008
RS30A_YEASTRPS30Agenetic
27708008
RS30B_YEASTRPS30Agenetic
27708008
ARPC3_YEASTARC18genetic
27708008
PSP2_YEASTPSP2genetic
27708008
YMF3_YEASTYML053Cgenetic
27708008
HMDH1_YEASTHMG1genetic
27708008
CSI1_YEASTCSI1genetic
27708008
SNO1_YEASTSNO1genetic
27708008
SNZ1_YEASTSNZ1genetic
27708008
YPK2_YEASTYPK2genetic
27708008
HFA1_YEASTHFA1genetic
27708008
SKY1_YEASTSKY1genetic
27708008
LKHA4_YEASTLAP2genetic
27708008
TPM1_YEASTTPM1genetic
27708008
LEU1_YEASTLEU4genetic
27708008
YNL5_YEASTYNL115Cgenetic
27708008
SIL1_YEASTSIL1genetic
27708008
ZEO1_YEASTZEO1genetic
27708008
YO114_YEASTYOL114Cgenetic
27708008
RTC1_YEASTRTC1genetic
27708008
GYP1_YEASTGYP1genetic
27708008
ODC2_YEASTODC2genetic
27708008
MCP1_YEASTMCP1genetic
27708008
PALA_YEASTRIM20genetic
27708008
TRM44_YEASTTRM44genetic
27708008
MRX11_YEASTYPL041Cgenetic
27708008
LGE1_YEASTLGE1genetic
27708008
POC4_YEASTPOC4genetic
27708008
YP191_YEASTYPL191Cgenetic
27708008
RKM1_YEASTRKM1genetic
27708008

Drug and Disease Associations
Kegg Drug
DrugBank
There are no disease associations of PTM sites.
Regulatory Network of PDX3_YEAST

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Related Literatures of Post-Translational Modification
Ubiquitylation
ReferencePubMed
"A proteomics approach to understanding protein ubiquitination.";
Peng J., Schwartz D., Elias J.E., Thoreen C.C., Cheng D.,Marsischky G., Roelofs J., Finley D., Gygi S.P.;
Nat. Biotechnol. 21:921-926(2003).
Cited for: UBIQUITINATION [LARGE SCALE ANALYSIS] AT LYS-29, AND MASSSPECTROMETRY.

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