PHO4_YEAST - dbPTM
PHO4_YEAST - PTM Information in dbPTM
Basic Information of Protein
UniProt ID PHO4_YEAST
UniProt AC P07270
Protein Name Phosphate system positive regulatory protein PHO4
Gene Name PHO4
Organism Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast).
Sequence Length 312
Subcellular Localization Cytoplasm . Nucleus . Predominantly cytoplasmic under high-phosphate conditions and localized to the nucleus upon phosphate starvation.
Protein Description Transcriptional activator that regulates the expression of repressible phosphatase under phosphate starvation conditions. Binds to the upstream activating sequence (UAS) of several phosphatase encoding PHO genes. Inhibited by the cyclin-CDK PHO80-PHO85 under high-phosphate conditions..
Protein Sequence MGRTTSEGIHGFVDDLEPKSSILDKVGDFITVNTKRHDGREDFNEQNDELNSQENHNSSENGNENENEQDSLALDDLDRAFELVEGMDMDWMMPSHAHHSPATTATIKPRLLYSPLIHTQSAVPVTISPNLVATATSTTSANKVTKNKSNSSPYLNKRRGKPGPDSATSLFELPDSVIPTPKPKPKPKQYPKVILPSNSTRRVSPVTAKTSSSAEGVVVASESPVIAPHGSSHSRSLSKRRSSGALVDDDKRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNVST
Overview of Protein Modification Sites with Functional and Structural Information
Experimental Post-Translational Modification Sites

* ASA = Accessible Surface Area

Locations Modification Substrate Peptides
&
Secondary Structure
ASA (%) Reference Orthologous
Protein Cluster
4Phosphorylation----MGRTTSEGIHG
----CCCCCCCCCCC
29.0119823750
5Phosphorylation---MGRTTSEGIHGF
---CCCCCCCCCCCC
24.3419823750
6Phosphorylation--MGRTTSEGIHGFV
--CCCCCCCCCCCCC
32.9619823750
52PhosphorylationEQNDELNSQENHNSS
HHHHHHHHHCCCCCC
52.0419779198
58PhosphorylationNSQENHNSSENGNEN
HHHCCCCCCCCCCCC
31.3219779198
100PhosphorylationMPSHAHHSPATTATI
CCCCCCCCCCCCCCC
13.339853758
113PhosphorylationTIKPRLLYSPLIHTQ
CCCCHHEECCCEECC
16.9120377248
114PhosphorylationIKPRLLYSPLIHTQS
CCCHHEECCCEECCC
17.1322369663
119PhosphorylationLYSPLIHTQSAVPVT
EECCCEECCCCCEEE
19.7522369663
121PhosphorylationSPLIHTQSAVPVTIS
CCCEECCCCCEEEEC
32.1820377248
126PhosphorylationTQSAVPVTISPNLVA
CCCCCEEEECCCEEE
15.0722369663
128PhosphorylationSAVPVTISPNLVATA
CCCEEEECCCEEEEE
9.8122369663
134PhosphorylationISPNLVATATSTTSA
ECCCEEEEEEECCCC
24.0022369663
136PhosphorylationPNLVATATSTTSANK
CCEEEEEEECCCCCC
23.4222369663
137PhosphorylationNLVATATSTTSANKV
CEEEEEEECCCCCCC
27.5023749301
138PhosphorylationLVATATSTTSANKVT
EEEEEEECCCCCCCC
22.0322369663
139PhosphorylationVATATSTTSANKVTK
EEEEEECCCCCCCCC
26.1322369663
140PhosphorylationATATSTTSANKVTKN
EEEEECCCCCCCCCC
29.9022369663
145PhosphorylationTTSANKVTKNKSNSS
CCCCCCCCCCCCCCC
30.4327017623
149PhosphorylationNKVTKNKSNSSPYLN
CCCCCCCCCCCCCCC
51.8722890988
151PhosphorylationVTKNKSNSSPYLNKR
CCCCCCCCCCCCCCC
39.5222890988
152PhosphorylationTKNKSNSSPYLNKRR
CCCCCCCCCCCCCCC
23.0922369663
154PhosphorylationNKSNSSPYLNKRRGK
CCCCCCCCCCCCCCC
25.5122890988
157UbiquitinationNSSPYLNKRRGKPGP
CCCCCCCCCCCCCCC
40.6623749301
166PhosphorylationRGKPGPDSATSLFEL
CCCCCCCCCCCCCCC
36.2622369663
168PhosphorylationKPGPDSATSLFELPD
CCCCCCCCCCCCCCC
29.8922369663
169PhosphorylationPGPDSATSLFELPDS
CCCCCCCCCCCCCCC
30.6722369663
197PhosphorylationYPKVILPSNSTRRVS
CCEEEECCCCCCCCC
39.7119823750
199PhosphorylationKVILPSNSTRRVSPV
EEEECCCCCCCCCCC
27.8521440633
200PhosphorylationVILPSNSTRRVSPVT
EEECCCCCCCCCCCE
27.0919823750
204PhosphorylationSNSTRRVSPVTAKTS
CCCCCCCCCCEEECC
16.3119823750
207PhosphorylationTRRVSPVTAKTSSSA
CCCCCCCEEECCCCC
26.3128132839
210PhosphorylationVSPVTAKTSSSAEGV
CCCCEEECCCCCCCE
31.2322890988
211PhosphorylationSPVTAKTSSSAEGVV
CCCEEECCCCCCCEE
22.9122890988
212PhosphorylationPVTAKTSSSAEGVVV
CCEEECCCCCCCEEE
38.5122890988
213PhosphorylationVTAKTSSSAEGVVVA
CEEECCCCCCCEEEE
30.0622890988
221PhosphorylationAEGVVVASESPVIAP
CCCEEEEECCCEECC
27.3122890988
223PhosphorylationGVVVASESPVIAPHG
CEEEEECCCEECCCC
23.2117330950
231PhosphorylationPVIAPHGSSHSRSLS
CEECCCCCCCCCCCC
23.1121440633
232PhosphorylationVIAPHGSSHSRSLSK
EECCCCCCCCCCCCC
30.0322890988
234PhosphorylationAPHGSSHSRSLSKRR
CCCCCCCCCCCCCCC
26.0519823750
236PhosphorylationHGSSHSRSLSKRRSS
CCCCCCCCCCCCCCC
39.7519823750
238PhosphorylationSSHSRSLSKRRSSGA
CCCCCCCCCCCCCCC
25.9320377248
242PhosphorylationRSLSKRRSSGALVDD
CCCCCCCCCCCCCCC
36.8425521595
243PhosphorylationSLSKRRSSGALVDDD
CCCCCCCCCCCCCCC
26.6925521595
292UbiquitinationNVSAAPSKATTVEAA
CCCCCCCCCHHHHHH
49.0123749301
295PhosphorylationAAPSKATTVEAACRY
CCCCCCHHHHHHHHH
22.6227017623

Upstream regulatory proteins (kinases for phosphorylation sites, E3 ubiquitin ligases of ubiquitination sites, ...)
Modified Location Modified Residue Modification Type of Upstream Proteins Gene Name of Upstream Proteins UniProt AC of Upstream Proteins Sources
100SPhosphorylationKinasePHO85P17157
Uniprot
114SPhosphorylationKinasePHO85P17157
Uniprot
128SPhosphorylationKinasePHO85P17157
Uniprot
152SPhosphorylationKinasePHO85P17157
Uniprot
223SPhosphorylationKinasePHO85P17157
Uniprot

Functions of PTM Sites
Modified Location Modified Residue Modification Function Reference
114SPhosphorylation

8539622
128SPhosphorylation

8539622
152SPhosphorylation

8539622
223SPhosphorylation

8539622

Disease-associated PTM Sites based on SAP

* Distance = the distance between SAP position and PTM sites.

Modified Location Modification Variant Position
(Distance <= 10)
Residue Change SAP Related Disease Reference

Oops, there are no SNP-PTM records of PHO4_YEAST !!

Protein-Protein Interaction
Interacting Protein Gene Name Interaction Type PPI Reference Domain-Domain Interactions
IMB3_YEASTPSE1physical
9732266
PHO2_YEASTPHO2physical
9354395
TF2B_YEASTSUA7physical
10077585
PHO4_YEASTPHO4physical
9443961
TBP_YEASTSPT15physical
9354395
TF2B_YEASTSUA7physical
9354395
T2EB_YEASTTFA2physical
9354395
PHO80_YEASTPHO80physical
11069666
PHO2_YEASTPHO2physical
8676879
MSN5_YEASTMSN5physical
14659740
PHO80_YEASTPHO80physical
14659740
MSN5_YEASTMSN5physical
10320381
IMB3_YEASTPSE1physical
10320381
MSN5_YEASTMSN5physical
9853758
PHO4_YEASTPHO4physical
11967834
PHO4_YEASTPHO4physical
9303313
PHO80_YEASTPHO80physical
8187772
PHO2_YEASTPHO2physical
10320381
PHO80_YEASTPHO80genetic
2671650
PHO2_YEASTPHO2genetic
9566882
PHO80_YEASTPHO80genetic
1568260
H3_YEASTHHT1physical
16554755
SODM_YEASTSOD2physical
16554755
IPB2_YEASTPBI2physical
16554755
PUR91_YEASTADE16physical
14660704
C1TC_YEASTADE3physical
14660704
APE3_YEASTAPE3physical
14660704
AROC_YEASTARO2physical
14660704
AROG_YEASTARO4physical
14660704
ASNS1_YEASTASN1physical
14660704
BBC1_YEASTBBC1physical
14660704
KAPR_YEASTBCY1physical
14660704
TCPD_YEASTCCT4physical
14660704
TCPQ_YEASTCCT8physical
14660704
IF4E_YEASTCDC33physical
14660704
CDC73_YEASTCDC73physical
14660704
CHS5_YEASTCHS5physical
14660704
DBP2_YEASTDBP2physical
14660704
DBP3_YEASTDBP3physical
14660704
DIG1_YEASTDIG1physical
14660704
EAP1_YEASTEAP1physical
14660704
EF2_YEASTEFT2physical
14660704
FAS1_YEASTFAS1physical
14660704
IF2P_YEASTFUN12physical
14660704
HXKG_YEASTGLK1physical
14660704
GLT1_YEASTGLT1physical
14660704
GLY1_YEASTGLY1physical
14660704
GUAA_YEASTGUA1physical
14660704
EF3B_YEASTHEF3physical
14660704
AK_YEASTHOM3physical
14660704
HRB1_YEASTHRB1physical
14660704
HSP60_YEASTHSP60physical
14660704
IMDH4_YEASTIMD4physical
14660704
XRN1_YEASTXRN1physical
14660704
KRI1_YEASTKRI1physical
14660704
HOSM_YEASTLYS21physical
14660704
HOSC_YEASTLYS20physical
14660704
MYO5_YEASTMYO5physical
14660704
NFS1_YEASTNFS1physical
14660704
NMA1_YEASTNMA1physical
14660704
FBRL_YEASTNOP1physical
14660704
NOP58_YEASTNOP58physical
14660704
NSR1_YEASTNSR1physical
14660704
PABP_YEASTPAB1physical
14660704
RPA2_YEASTRPA135physical
14660704
RPA34_YEASTRPA34physical
14660704
RL11B_YEASTRPL11Bphysical
14660704
RL11A_YEASTRPL11Aphysical
14660704
RL12A_YEASTRPL12Bphysical
14660704
RL12B_YEASTRPL12Bphysical
14660704
RL16A_YEASTRPL16Aphysical
14660704
RL23A_YEASTRPL23Aphysical
14660704
RL23B_YEASTRPL23Aphysical
14660704
RL24A_YEASTRPL24Aphysical
14660704
RL24B_YEASTRPL24Bphysical
14660704
RL26B_YEASTRPL26Bphysical
14660704
RL26A_YEASTRPL26Aphysical
14660704
RL29_YEASTRPL29physical
14660704
RL34A_YEASTRPL34Aphysical
14660704
RL34B_YEASTRPL34Bphysical
14660704
RL35A_YEASTRPL35Aphysical
14660704
RL35B_YEASTRPL35Aphysical
14660704
RL36A_YEASTRPL36Aphysical
14660704
RL36B_YEASTRPL36Bphysical
14660704
RL38_YEASTRPL38physical
14660704
RL43A_YEASTRPL43Bphysical
14660704
RL43B_YEASTRPL43Bphysical
14660704
RL5_YEASTRPL5physical
14660704
RL7A_YEASTRPL7Aphysical
14660704
RL7B_YEASTRPL7Bphysical
14660704
RLA1_YEASTRPP1Aphysical
14660704
RLA2_YEASTRPP2Aphysical
14660704
RLA4_YEASTRPP2Bphysical
14660704
RS12_YEASTRPS12physical
14660704
RS19B_YEASTRPS19Bphysical
14660704
RS19A_YEASTRPS19Aphysical
14660704
RS2_YEASTRPS2physical
14660704
RS23A_YEASTRPS23Aphysical
14660704
RS23B_YEASTRPS23Aphysical
14660704
RS25A_YEASTRPS25Aphysical
14660704
RS25B_YEASTRPS25Bphysical
14660704
RS27B_YEASTRPS27Bphysical
14660704
RS27A_YEASTRPS27Aphysical
14660704
RS29A_YEASTRPS29Aphysical
14660704
RS29B_YEASTRPS29Bphysical
14660704
RS5_YEASTRPS5physical
14660704
RS7A_YEASTRPS7Aphysical
14660704
RS7B_YEASTRPS7Bphysical
14660704
RS9A_YEASTRPS9Aphysical
14660704
RS9B_YEASTRPS9Bphysical
14660704
RRB1_YEASTRRB1physical
14660704
RRP5_YEASTRRP5physical
14660704
RSP5_YEASTRSP5physical
14660704
SEC23_YEASTSEC23physical
14660704
SYSC_YEASTSES1physical
14660704
GLYC_YEASTSHM2physical
14660704
NOP56_YEASTNOP56physical
14660704
SIN3_YEASTSIN3physical
14660704
SNF1_YEASTSNF1physical
14660704
RCC1_YEASTSRM1physical
14660704
STE11_YEASTSTE11physical
14660704
STE50_YEASTSTE50physical
14660704
TSR1_YEASTTSR1physical
14660704
TBA1_YEASTTUB1physical
14660704
TBB_YEASTTUB2physical
14660704
TBA3_YEASTTUB3physical
14660704
URA7_YEASTURA7physical
14660704
UTP7_YEASTUTP7physical
14660704
VIP1_YEASTVIP1physical
14660704
VPS1_YEASTVPS1physical
14660704
VRP1_YEASTVRP1physical
14660704
YF21B_YEASTYFL002W-Aphysical
14660704
YG22B_YEASTYFL002W-Aphysical
14660704
YD22B_YEASTYDR210W-Bphysical
14660704
YD21B_YEASTYDR034C-Dphysical
14660704
YC21B_YEASTYCL019Wphysical
14660704
YD23B_YEASTYDR261W-Bphysical
14660704
MNP1_YEASTMNP1physical
14660704
LSM12_YEASTLSM12physical
14660704
TM108_YEASTTMA108physical
14660704
YM13B_YEASTYMR045Cphysical
14660704
YM14B_YEASTYMR050Cphysical
14660704
BCH1_YEASTBCH1physical
14660704
YN12B_YEASTYNL054W-Bphysical
14660704
PHO81_YEASTPHO81genetic
15926040
RSP5_YEASTRSP5genetic
18165238
END3_YEASTEND3genetic
18165238
PHO4_YEASTPHO4physical
18719252
STE20_YEASTSTE20genetic
19269370
SIW14_YEASTSIW14genetic
19269370
PHO80_YEASTPHO80genetic
19269370
PUR8_YEASTADE13physical
19528318
YPT6_YEASTYPT6genetic
20959818
UBP3_YEASTUBP3genetic
20959818
SLX8_YEASTSLX8genetic
21127252
DCC1_YEASTDCC1genetic
21127252
UPC2_YEASTUPC2genetic
21127252
PHO2_YEASTPHO2genetic
21700227
IMB3_YEASTPSE1physical
23541588
PRS10_YEASTRPT4physical
12200147
PRS7_YEASTRPT1physical
12200147
PRS8_YEASTRPT6physical
12200147
TBP_YEASTSPT15physical
12200147
TFB2_YEASTTFB2physical
12200147
ATG15_YEASTATG15genetic
27708008
PP2C1_YEASTPTC1genetic
27708008
YJ90_YEASTYJR120Wgenetic
27708008
RL6B_YEASTRPL6Bgenetic
27708008
PHO80_YEASTPHO80genetic
27708008
NOP12_YEASTNOP12genetic
27708008
DGK1_YEASTDGK1genetic
27708008
SRO7_YEASTSRO7genetic
27708008
STT3_YEASTSTT3genetic
27708008
BRL1_YEASTBRL1genetic
27708008
ARP3_YEASTARP3genetic
27708008
NOP8_YEASTNOP8genetic
27708008
PYC2_YEASTPYC2genetic
27708008
INO2_YEASTINO2genetic
27708008
HOS2_YEASTHOS2genetic
27708008
SSBP1_YEASTSBP1genetic
27708008
YHR2_YEASTYHR112Cgenetic
27708008
DOT5_YEASTDOT5genetic
27708008
YIQ6_YEASTYIL166Cgenetic
27708008
PHO86_YEASTPHO86genetic
27708008
DHOM_YEASTHOM6genetic
27708008
PRR1_YEASTPRR1genetic
27708008
YKY5_YEASTYKR005Cgenetic
27708008
MMR1_YEASTMMR1genetic
27708008
GYS2_YEASTGSY2genetic
27708008
RS3A2_YEASTRPS1Bgenetic
27708008
MSC1_YEASTMSC1genetic
27708008
HMI1_YEASTHMI1genetic
27708008
RS10A_YEASTRPS10Agenetic
27708008
MBF1_YEASTMBF1genetic
27708008
LGE1_YEASTLGE1genetic
27708008
RL21B_YEASTRPL21Bgenetic
27708008
SIN3_YEASTSIN3physical
28175933
CYC8_YEASTCYC8physical
28175933
RPD3_YEASTRPD3genetic
25582350

Drug and Disease Associations
Kegg Drug
DrugBank
There are no disease associations of PTM sites.
Regulatory Network of PHO4_YEAST

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Related Literatures of Post-Translational Modification
Phosphorylation
ReferencePubMed
"A multidimensional chromatography technology for in-depthphosphoproteome analysis.";
Albuquerque C.P., Smolka M.B., Payne S.H., Bafna V., Eng J., Zhou H.;
Mol. Cell. Proteomics 7:1389-1396(2008).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-128; SER-152; SER-204;SER-242 AND SER-243, AND MASS SPECTROMETRY.
"Proteome-wide identification of in vivo targets of DNA damagecheckpoint kinases.";
Smolka M.B., Albuquerque C.P., Chen S.H., Zhou H.;
Proc. Natl. Acad. Sci. U.S.A. 104:10364-10369(2007).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-204; SER-242 ANDSER-243, AND MASS SPECTROMETRY.
"Analysis of phosphorylation sites on proteins from Saccharomycescerevisiae by electron transfer dissociation (ETD) massspectrometry.";
Chi A., Huttenhower C., Geer L.Y., Coon J.J., Syka J.E.P., Bai D.L.,Shabanowitz J., Burke D.J., Troyanskaya O.G., Hunt D.F.;
Proc. Natl. Acad. Sci. U.S.A. 104:2193-2198(2007).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-242 AND SER-243, ANDMASS SPECTROMETRY.
"Large-scale phosphorylation analysis of alpha-factor-arrestedSaccharomyces cerevisiae.";
Li X., Gerber S.A., Rudner A.D., Beausoleil S.A., Haas W., Villen J.,Elias J.E., Gygi S.P.;
J. Proteome Res. 6:1190-1197(2007).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-223, AND MASSSPECTROMETRY.
"Roles of phosphorylation sites in regulating activity of thetranscription factor Pho4.";
Komeili A., O'Shea E.K.;
Science 284:977-980(1999).
Cited for: PHOSPHORYLATION AT SER-100; SER-114; SER-128; SER-152 AND SER-223.
"Regulation of PHO4 nuclear localization by the PHO80-PHO85 cyclin-CDKcomplex.";
O'Neill E.M., Kaffman A., Jolly E.R., O'Shea E.K.;
Science 271:209-212(1996).
Cited for: PHOSPHORYLATION AT SER-100; SER-114; SER-128; SER-152 AND SER-223, ANDSUBCELLULAR LOCATION.

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