TFB4_YEAST - dbPTM
TFB4_YEAST - PTM Information in dbPTM
Basic Information of Protein
UniProt ID TFB4_YEAST
UniProt AC Q12004
Protein Name General transcription and DNA repair factor IIH subunit TFB4
Gene Name TFB4
Organism Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast).
Sequence Length 338
Subcellular Localization Nucleus.
Protein Description Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II. In NER, TFIIH acts by opening DNA around the lesion to allow the excision of the damaged oligonucleotide and its replacement by a new DNA fragment. In transcription, TFIIH has an essential role in transcription initiation. When the pre-initiation complex (PIC) has been established, TFIIH is required for promoter opening and promoter escape. Phosphorylation of the C-terminal tail (CTD) of the largest subunit of RNA polymerase II by the kinase module TFIIK controls the initiation of transcription..
Protein Sequence MDAISDPTFKHARSRKQVTEESPSLLTVIIEIAPKLWTTFDEEGNEKGSIIKVLEALIVFLNAHLAFNSANKVAVIAAYSQGIKYLYPESTSALKASESENKTRSDLKIINSDMYRRFRNVDETLVEEIYKLFELEKKQIEQNSQRSTLAGAMSAGLTYVNRISKESVTTSLKSRLLVLTCGSGSSKDEIFQYIPIMNCIFSATKMKCPIDVVKIGGSKESTFLQQTTDATNGVYLHVESTEGLIQYLATAMFIDPSLRPIIVKPNHGSVDFRTSCYLTGRVVAVGFICSVCLCVLSIIPPGNKCPACDSQFDEHVIAKLKRKPVVPRLKAKKKVTKP
Overview of Protein Modification Sites with Functional and Structural Information
Experimental Post-Translational Modification Sites

* ASA = Accessible Surface Area

Locations Modification Substrate Peptides
&
Secondary Structure
ASA (%) Reference Orthologous
Protein Cluster
1Acetylation-------MDAISDPT
-------CCCCCCCC
7.6822814378
8PhosphorylationMDAISDPTFKHARSR
CCCCCCCCHHHHHHH
50.7528889911

Upstream regulatory proteins (kinases for phosphorylation sites, E3 ubiquitin ligases of ubiquitination sites, ...)
Modified Location Modified Residue Modification Type of Upstream Proteins Gene Name of Upstream Proteins UniProt AC of Upstream Proteins Sources

Oops, there are no upstream regulatory protein records of TFB4_YEAST !!

Functions of PTM Sites
Modified Location Modified Residue Modification Function Reference

Oops, there are no descriptions of PTM sites of TFB4_YEAST !!

Disease-associated PTM Sites based on SAP

* Distance = the distance between SAP position and PTM sites.

Modified Location Modification Variant Position
(Distance <= 10)
Residue Change SAP Related Disease Reference

Oops, there are no SNP-PTM records of TFB4_YEAST !!

Protein-Protein Interaction
Interacting Protein Gene Name Interaction Type PPI Reference Domain-Domain Interactions
RAD3_YEASTRAD3physical
14500720
SSL1_YEASTSSL1physical
14500720
TFB1_YEASTTFB1physical
14500720
TFB2_YEASTTFB2physical
14500720
TFB5_YEASTTFB5physical
15220919
TFB1_YEASTTFB1physical
15220919
TFB5_YEASTTFB5physical
8657139
SSL1_YEASTSSL1physical
8657139
TFB3_YEASTTFB3physical
8657139
TFB2_YEASTTFB2physical
8657139
CCL1_YEASTCCL1physical
8657139
TF2B_YEASTSUA7physical
8657139
RPB1_YEASTRPO21physical
8657139
MED20_YEASTSRB2physical
8657139
MED17_YEASTSRB4physical
8657139
MED18_YEASTSRB5physical
8657139
MED22_YEASTSRB6physical
8657139
TBP_YEASTSPT15physical
8657139
TAF2_YEASTTAF2physical
8657139
T2FA_YEASTTFG1physical
8657139
T2FB_YEASTTFG2physical
8657139
TAF14_YEASTTAF14physical
8657139
SSL1_YEASTSSL1physical
16429126
TFB1_YEASTTFB1physical
16429126
RAD25_YEASTSSL2physical
19818408
RAD3_YEASTRAD3physical
19818408
TFB1_YEASTTFB1physical
19818408
SSL1_YEASTSSL1physical
19818408
CCL1_YEASTCCL1physical
19818408
TFB3_YEASTTFB3physical
19818408
KIN28_YEASTKIN28physical
19818408
HSP82_YEASTHSP82physical
21876155
HSC82_YEASTHSC82physical
21876155
HSP7F_YEASTSSE1physical
21876155
TFB1_YEASTTFB1physical
21876155
HSP71_YEASTSSA1physical
21876155
HSP72_YEASTSSA2physical
21876155
HSP77_YEASTSSC1physical
21876155
SSB1_YEASTSSB1physical
21876155
SSB2_YEASTSSB2physical
21876155
TFB2_YEASTTFB2physical
21876155
SSL1_YEASTSSL1physical
21876155
METK2_YEASTSAM2physical
21876155
MAS5_YEASTYDJ1physical
21876155
APC11_YEASTAPC11genetic
27708008
ERF3_YEASTSUP35genetic
27708008
SWC4_YEASTSWC4genetic
27708008
PSA7_YEASTPRE10genetic
27708008
TCM62_YEASTTCM62genetic
27708008
SAN1_YEASTSAN1genetic
27708008
SAP1_YEASTSAP1genetic
27708008
SWI4_YEASTSWI4genetic
27708008
UBR1_YEASTUBR1genetic
27708008
SWI6_YEASTSWI6genetic
27708008
SEI1_YEASTFLD1genetic
27708008
POP7_YEASTPOP7genetic
27708008
UAP1_YEASTQRI1genetic
27708008
KIN28_YEASTKIN28genetic
27708008
SLU7_YEASTSLU7genetic
27708008
CDC37_YEASTCDC37genetic
27708008
TCPZ_YEASTCCT6genetic
27708008
TFB1_YEASTTFB1genetic
27708008
MOB2_YEASTMOB2genetic
27708008
ACT_YEASTACT1genetic
27708008
NBP35_YEASTNBP35genetic
27708008
TAF1_YEASTTAF1genetic
27708008
YHI0_YEASTYHR020Wgenetic
27708008
BCD1_YEASTBCD1genetic
27708008
YHS2_YEASTCIA2genetic
27708008
SLN1_YEASTSLN1genetic
27708008
IF2A_YEASTSUI2genetic
27708008
ESS1_YEASTESS1genetic
27708008
SSL1_YEASTSSL1genetic
27708008
BOS1_YEASTBOS1genetic
27708008
TAF11_YEASTTAF11genetic
27708008
TAF13_YEASTTAF13genetic
27708008
TAF4_YEASTTAF4genetic
27708008
CAP_YEASTSRV2genetic
27708008
SEC12_YEASTSEC12genetic
27708008
HRP1_YEASTHRP1genetic
27708008
SGT1_YEASTSGT1genetic
27708008
SMP3_YEASTSMP3genetic
27708008
APC5_YEASTAPC5genetic
27708008
SWC3_YEASTSWC3genetic
27708008
AGP2_YEASTAGP2genetic
27708008
YBY7_YEASTYBR137Wgenetic
27708008
PYC2_YEASTPYC2genetic
27708008
ODPB_YEASTPDB1genetic
27708008
SHG1_YEASTSHG1genetic
27708008
SNT1_YEASTSNT1genetic
27708008
PP2C1_YEASTPTC1genetic
27708008
GPR1_YEASTGPR1genetic
27708008
MCH1_YEASTMCH1genetic
27708008
BRE1_YEASTBRE1genetic
27708008
RXT3_YEASTRXT3genetic
27708008
LIC4_YEASTATC1genetic
27708008
SWR1_YEASTSWR1genetic
27708008
SDC1_YEASTSDC1genetic
27708008
VPS72_YEASTVPS72genetic
27708008
CEM1_YEASTCEM1genetic
27708008
RS26B_YEASTRPS26Bgenetic
27708008
TAPT1_YEASTEMP65genetic
27708008
FTR1_YEASTFTR1genetic
27708008
UBP3_YEASTUBP3genetic
27708008
BEM2_YEASTBEM2genetic
27708008
BST1_YEASTBST1genetic
27708008
GET1_YEASTGET1genetic
27708008
TFS2_YEASTDST1genetic
27708008
GUP1_YEASTGUP1genetic
27708008
MRM2_YEASTMRM2genetic
27708008
XRN1_YEASTXRN1genetic
27708008
GTS1_YEASTGTS1genetic
27708008
ARO8_YEASTARO8genetic
27708008
YG1X_YEASTYGR050Cgenetic
27708008
FMP48_YEASTFMP48genetic
27708008
PSD2_YEASTPSD2genetic
27708008
SAY1_YEASTSAY1genetic
27708008
MAL12_YEASTMAL12genetic
27708008
NPR3_YEASTNPR3genetic
27708008
AP18A_YEASTYAP1801genetic
27708008
YJY1_YEASTYJR011Cgenetic
27708008
MCR1_YEASTMCR1genetic
27708008
NNK1_YEASTNNK1genetic
27708008
SAC1_YEASTSAC1genetic
27708008
SA190_YEASTSAP190genetic
27708008
SET3_YEASTSET3genetic
27708008
SRL3_YEASTSRL3genetic
27708008
GEX2_YEASTGEX2genetic
27708008
RL8B_YEASTRPL8Bgenetic
27708008
THI73_YEASTTHI73genetic
27708008
PUR91_YEASTADE16genetic
27708008
ARP6_YEASTARP6genetic
27708008
APTH1_YEASTYLR118Cgenetic
27708008
RS29A_YEASTRPS29Agenetic
27708008
COX8_YEASTCOX8genetic
27708008
TSR2_YEASTTSR2genetic
27708008
VPS71_YEASTVPS71genetic
27708008
SUR7_YEASTSUR7genetic
27708008
STB4_YEASTSTB4genetic
27708008
SCS7_YEASTSCS7genetic
27708008
TDA1_YEASTTDA1genetic
27708008
GAS1_YEASTGAS1genetic
27708008
PET8_YEASTPET8genetic
27708008
HRB1_YEASTHRB1genetic
27708008
MSG5_YEASTMSG5genetic
27708008
BRE5_YEASTBRE5genetic
27708008
RTG1_YEASTRTG1genetic
27708008
STI1_YEASTSTI1genetic
27708008
LIPA_YEASTLIP5genetic
27708008
HAP5_YEASTHAP5genetic
27708008

Drug and Disease Associations
Kegg Drug
DrugBank
There are no disease associations of PTM sites.
Regulatory Network of TFB4_YEAST

loading...

Related Literatures of Post-Translational Modification

TOP