NOP13_YEAST - dbPTM
NOP13_YEAST - PTM Information in dbPTM
Basic Information of Protein
UniProt ID NOP13_YEAST
UniProt AC P53883
Protein Name Nucleolar protein 13
Gene Name NOP13
Organism Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast).
Sequence Length 403
Subcellular Localization Nucleus, nucleolus . Also found in nucleoplasm.
Protein Description
Protein Sequence MSETELSKEDAVTKKDNEEQVKKALLDPTKKRKAEDEIEIDLKSSIPLSKKQKRLLRRGKVTLEELNAKYNIDPKSIEEYKEDAEKKKSGASEKDAQGEESTINTPTGDESGEVVKKKKKDENKYGVWIGNLSFDTTKDDLVRFFIAKTKDNEDEKSRVTEQDITRLSMPRVAAKNSNAMKNKGFCYMFFKNVEQMKAVLELSESHLNGRNMLIKDSENYSGRPDKDDLVAMSKNPPSRILFVGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEGSTNALKDKSCRKIAGRPLRMEYGEDRSKRQVRKKVENVSRNNSSSFDISNNKGYDRAGQDNGSKPEYKRSNANRRPPVDSNNRTKSSVALATAQRGSAAIVPSQGKKVKFD
Overview of Protein Modification Sites with Functional and Structural Information
Experimental Post-Translational Modification Sites

* ASA = Accessible Surface Area

Locations Modification Substrate Peptides
&
Secondary Structure		 ASA (%) Reference Orthologous
Protein Cluster
2Phosphorylation------MSETELSKE
------CCCCCCCHH		53.9122369663
2Acetylation------MSETELSKE
------CCCCCCCHH		53.9115665377
4Phosphorylation----MSETELSKEDA
----CCCCCCCHHHH		34.6122369663
7Phosphorylation-MSETELSKEDAVTK
-CCCCCCCHHHHCCC		27.9722369663
8AcetylationMSETELSKEDAVTKK
CCCCCCCHHHHCCCC		72.7022865919
45PhosphorylationIEIDLKSSIPLSKKQ
EEECCHHCCCCCHHH		27.0021440633
60AcetylationKRLLRRGKVTLEELN
HHHHHCCCCCHHHHH		30.1825381059
69AcetylationTLEELNAKYNIDPKS
CHHHHHHHCCCCHHH		37.4424489116
76PhosphorylationKYNIDPKSIEEYKED
HCCCCHHHHHHHHHH		40.3930377154
89PhosphorylationEDAEKKKSGASEKDA
HHHHHHHCCCCHHHC		48.7726447709
92PhosphorylationEKKKSGASEKDAQGE
HHHHCCCCHHHCCCC		49.0219779198
94AcetylationKKSGASEKDAQGEES
HHCCCCHHHCCCCCC		56.7324489116
101PhosphorylationKDAQGEESTINTPTG
HHCCCCCCCCCCCCC		30.2222369663
102PhosphorylationDAQGEESTINTPTGD
HCCCCCCCCCCCCCC		22.8622369663
105PhosphorylationGEESTINTPTGDESG
CCCCCCCCCCCCCCC		20.5522369663
107PhosphorylationESTINTPTGDESGEV
CCCCCCCCCCCCCCE		56.0522369663
111PhosphorylationNTPTGDESGEVVKKK
CCCCCCCCCCEEEEC		45.0220377248
116UbiquitinationDESGEVVKKKKKDEN
CCCCCEEEECCCCCC		65.1424961812
117UbiquitinationESGEVVKKKKKDENK
CCCCEEEECCCCCCC		59.2124961812
168PhosphorylationEQDITRLSMPRVAAK
HHHHHHHHHHHHHHC		24.3727017623
175AcetylationSMPRVAAKNSNAMKN
HHHHHHHCCCHHHCC		51.6924489116
177PhosphorylationPRVAAKNSNAMKNKG
HHHHHCCCHHHCCCC		25.8427017623
226AcetylationNYSGRPDKDDLVAMS
CCCCCCCHHHHEECC		56.6924489116
234UbiquitinationDDLVAMSKNPPSRIL
HHHEECCCCCCCEEE		61.4624961812
267AcetylationQHCGDIVKIRMATFE
HHHCCEEEEEEEEEC		25.5725381059
272PhosphorylationIVKIRMATFEDSGKC
EEEEEEEEECCCCCE		20.4330377154
280UbiquitinationFEDSGKCKGFAFIDF
ECCCCCEEEEEEEEE		61.6224961812
298AcetylationEGSTNALKDKSCRKI
CCCCHHHCCCHHHHH		61.7825381059
326UbiquitinationSKRQVRKKVENVSRN
HHHHHHHHHHHHCCC		44.1924961812
331PhosphorylationRKKVENVSRNNSSSF
HHHHHHHCCCCCCCE		40.6522369663
335PhosphorylationENVSRNNSSSFDISN
HHHCCCCCCCEECCC		30.7922369663
336PhosphorylationNVSRNNSSSFDISNN
HHCCCCCCCEECCCC		36.8322369663
337PhosphorylationVSRNNSSSFDISNNK
HCCCCCCCEECCCCC		27.1022369663
341PhosphorylationNSSSFDISNNKGYDR
CCCCEECCCCCCCCC		35.8722369663
344AcetylationSFDISNNKGYDRAGQ
CEECCCCCCCCCCCC		64.2024489116
344UbiquitinationSFDISNNKGYDRAGQ
CEECCCCCCCCCCCC		64.2024961812
360AcetylationNGSKPEYKRSNANRR
CCCCCCHHCCCCCCC		47.9225381059
372PhosphorylationNRRPPVDSNNRTKSS
CCCCCCCCCCCCHHH		35.9228889911
376PhosphorylationPVDSNNRTKSSVALA
CCCCCCCCHHHHHHH		37.0828889911
378PhosphorylationDSNNRTKSSVALATA
CCCCCCHHHHHHHHH		29.4522369663
379PhosphorylationSNNRTKSSVALATAQ
CCCCCHHHHHHHHHC		16.9920377248
389PhosphorylationLATAQRGSAAIVPSQ
HHHHCCCCEEEECCC		19.4030377154
395PhosphorylationGSAAIVPSQGKKVKF
CCEEEECCCCCEECC		40.4423749301
398AcetylationAIVPSQGKKVKFD--
EEECCCCCEECCC--		46.9125381059
398UbiquitinationAIVPSQGKKVKFD--
EEECCCCCEECCC--		46.9124961812
Upstream regulatory proteins (kinases for phosphorylation sites, E3 ubiquitin ligases of ubiquitination sites, ...)
Modified Location Modified Residue Modification Type of Upstream Proteins Gene Name of Upstream Proteins UniProt AC of Upstream Proteins Sources

Oops, there are no upstream regulatory protein records of NOP13_YEAST !!
Functions of PTM Sites
Modified Location Modified Residue Modification Function Reference

Oops, there are no descriptions of PTM sites of NOP13_YEAST !!
Disease-associated PTM Sites based on SAP

* Distance = the distance between SAP position and PTM sites.

Modified Location Modification Variant Position
(Distance <= 10) 		Residue Change SAP Related Disease Reference

Oops, there are no SNP-PTM records of NOP13_YEAST !!
Protein-Protein Interaction
Interacting Protein Gene Name Interaction Type PPI Reference Domain-Domain Interactions
NOC2_YEASTNOC2physical
11805837
IF4F1_YEASTTIF4631physical
11805837
NOP4_YEASTNOP4physical
11805837
PUF6_YEASTPUF6physical
11805837
EBP2_YEASTEBP2physical
11805837
KRI1_YEASTKRI1physical
11805837
MS116_YEASTMSS116physical
11805837
DRS1_YEASTDRS1physical
11805837
RRP5_YEASTRRP5physical
11805837
DBP7_YEASTDBP7physical
11805837
CIC1_YEASTCIC1physical
11805837
PESC_YEASTNOP7physical
11805837
IMDH2_YEASTIMD2physical
11805837
IMDH3_YEASTIMD3physical
11805837
NOP2_YEASTNOP2genetic
11452019
SPT3_YEASTSPT3physical
16554755
XRN1_YEASTXRN1physical
16554755
TRK1_YEASTTRK1physical
16554755
RPF2_YEASTRPF2physical
16554755
PRP16_YEASTPRP16physical
16554755
RRP5_YEASTRRP5physical
16554755
RRS1_YEASTRRS1physical
16554755
NOP58_YEASTNOP58physical
16554755
RLP7_YEASTRLP7physical
16429126
ARX1_YEASTARX1physical
16429126
DBP10_YEASTDBP10physical
16429126
NIP7_YEASTNIP7physical
16429126
NOG1_YEASTNOG1physical
16429126
NOP2_YEASTNOP2physical
16429126
NUG1_YEASTNUG1physical
16429126
RL11A_YEASTRPL11Aphysical
16429126
RL30_YEASTRPL30physical
16429126
RL7B_YEASTRPL7Bphysical
16429126
RL8B_YEASTRPL8Bphysical
16429126
SPB1_YEASTSPB1physical
16429126
PUF6_YEASTPUF6physical
16429126
RL31A_YEASTRPL31Aphysical
16429126
XRN1_YEASTXRN1physical
16429126
SSB2_YEASTSSB2physical
16429126
H4_YEASTHHF1physical
16429126
RRP5_YEASTRRP5physical
16429126
RS22B_YEASTRPS22Bphysical
16429126
RL27A_YEASTRPL27Aphysical
16429126
ERB1_YEASTERB1physical
16429126
PESC_YEASTNOP7physical
16429126
RL5_YEASTRPL5physical
16429126
RL6A_YEASTRPL6Aphysical
16429126
IF6_YEASTTIF6physical
16429126
MRT4_YEASTMRT4physical
16429126
NOP15_YEASTNOP15physical
16429126
RL2A_YEASTRPL2Aphysical
16429126
RL2B_YEASTRPL2Aphysical
16429126
RL36B_YEASTRPL36Bphysical
16429126
RL7A_YEASTRPL7Aphysical
16429126
RL9A_YEASTRPL9Aphysical
16429126
UBI4P_YEASTUBI4genetic
19061648
NOP4_YEASTNOP4physical
25877921
YAJ9_YEASTYAR029Wgenetic
27708008
YBI1_YEASTYBL081Wgenetic
27708008
QOR_YEASTZTA1genetic
27708008
SIF2_YEASTSIF2genetic
27708008
RIM1_YEASTRIM1genetic
27708008
SNT1_YEASTSNT1genetic
27708008
IMG2_YEASTIMG2genetic
27708008
TRM3_YEASTTRM3genetic
27708008
RL35A_YEASTRPL35Agenetic
27708008
RL35B_YEASTRPL35Agenetic
27708008
GIS1_YEASTGIS1genetic
27708008
YD131_YEASTYDR131Cgenetic
27708008
SAC3_YEASTSAC3genetic
27708008
DON1_YEASTDON1genetic
27708008
RT103_YEASTRTT103genetic
27708008
BCS1_YEASTBCS1genetic
27708008
HEH2_YEASTHEH2genetic
27708008
SNF1_YEASTSNF1genetic
27708008
IRC4_YEASTIRC4genetic
27708008
AK_YEASTHOM3genetic
27708008
GIP2_YEASTGIP2genetic
27708008
SA155_YEASTSAP155genetic
27708008
AP3B_YEASTAPL6genetic
27708008
TBP7_YEASTYTA7genetic
27708008
PIH1_YEASTPIH1genetic
27708008
HTD2_YEASTHTD2genetic
27708008
COX23_YEASTCOX23genetic
27708008
MTC6_YEASTMTC6genetic
27708008
TDA11_YEASTTDA11genetic
27708008
AIR1_YEASTAIR1genetic
27708008
FLX1_YEASTFLX1genetic
27708008
COXM1_YEASTCMC1genetic
27708008
BPT1_YEASTBPT1genetic
27708008
SWI6_YEASTSWI6genetic
27708008
RL37A_YEASTRPL37Agenetic
27708008
BUD8_YEASTBUD8genetic
27708008
CSI1_YEASTCSI1genetic
27708008
RIM13_YEASTRIM13genetic
27708008
COX7_YEASTCOX7genetic
27708008
PHO80_YEASTPHO80genetic
27708008
AIM39_YEASTAIM39genetic
27708008
CY1_YEASTCYT1genetic
27708008
COQ7_YEASTCAT5genetic
27708008
MNE1_YEASTMNE1genetic
27708008
SVL3_YEASTSVL3genetic
27708008
TBP6_YEASTYTA6genetic
27708008
GAL4_YEASTGAL4genetic
27708008
SPEE_YEASTSPE3genetic
27708008
MSS18_YEASTMSS18genetic
27708008
QCR2_YEASTQCR2genetic
27708008
NOP4_YEASTNOP4physical
27077951
Drug and Disease Associations
Kegg Drug
DrugBank
There are no disease associations of PTM sites.
Regulatory Network of NOP13_YEAST

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Related Literatures of Post-Translational Modification
Phosphorylation
ReferencePubMed
"A multidimensional chromatography technology for in-depthphosphoproteome analysis.";
Albuquerque C.P., Smolka M.B., Payne S.H., Bafna V., Eng J., Zhou H.;
Mol. Cell. Proteomics 7:1389-1396(2008).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-2; THR-105; SER-331;SER-335; SER-336; SER-337 AND THR-376, AND MASS SPECTROMETRY.
"Large-scale phosphorylation analysis of alpha-factor-arrestedSaccharomyces cerevisiae.";
Li X., Gerber S.A., Rudner A.D., Beausoleil S.A., Haas W., Villen J.,Elias J.E., Gygi S.P.;
J. Proteome Res. 6:1190-1197(2007).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-105, AND MASSSPECTROMETRY.

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