UniProt ID | EMD_HUMAN | |
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UniProt AC | P50402 | |
Protein Name | Emerin | |
Gene Name | EMD | |
Organism | Homo sapiens (Human). | |
Sequence Length | 254 | |
Subcellular Localization |
Nucleus inner membrane Single-pass membrane protein Nucleoplasmic side . Nucleus outer membrane. Colocalized with BANF1 at the central region of the assembling nuclear rim, near spindle-attachment sites. The accumulation of different intermediates |
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Protein Description | Stabilizes and promotes the formation of a nuclear actin cortical network. Stimulates actin polymerization in vitro by binding and stabilizing the pointed end of growing filaments. Inhibits beta-catenin activity by preventing its accumulation in the nucleus. Acts by influencing the nuclear accumulation of beta-catenin through a CRM1-dependent export pathway. Links centrosomes to the nuclear envelope via a microtubule association. EMD and BAF are cooperative cofactors of HIV-1 infection. Association of EMD with the viral DNA requires the presence of BAF and viral integrase. The association of viral DNA with chromatin requires the presence of BAF and EMD. Required for proper localization of non-farnesylated prelamin-A/C.. | |
Protein Sequence | MDNYADLSDTELTTLLRRYNIPHGPVVGSTRRLYEKKIFEYETQRRRLSPPSSSAASSYSFSDLNSTRGDADMYDLPKKEDALLYQSKGYNDDYYEESYFTTRTYGEPESAGPSRAVRQSVTSFPDADAFHHQVHDDDLLSSSEEECKDRERPMYGRDSAYQSITHYRPVSASRSSLDLSYYPTSSSTSFMSSSSSSSSWLTRRAIRPENRAPGAGLGQDRQVPLWGQLLLFLVFVIVLFFIYHFMQAEEGNPF | |
Overview of Protein Modification Sites with Functional and Structural Information | ||
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* ASA = Accessible Surface Area
Locations | Modification | Substrate Peptides & Secondary Structure |
ASA (%) | Reference | Orthologous Protein Cluster |
---|---|---|---|---|---|
1 | Acetylation | -------MDNYADLS -------CCCCCCCC | 7.32 | 20068231 | |
4 | Phosphorylation | ----MDNYADLSDTE ----CCCCCCCCHHH | 9.38 | 26552605 | |
8 | Phosphorylation | MDNYADLSDTELTTL CCCCCCCCHHHHHHH | 42.93 | 25159151 | |
10 | Phosphorylation | NYADLSDTELTTLLR CCCCCCHHHHHHHHH | 29.53 | 22617229 | |
13 | Phosphorylation | DLSDTELTTLLRRYN CCCHHHHHHHHHHCC | 14.79 | 22115753 | |
14 | Phosphorylation | LSDTELTTLLRRYNI CCHHHHHHHHHHCCC | 36.10 | 30108239 | |
19 | Phosphorylation | LTTLLRRYNIPHGPV HHHHHHHCCCCCCCC | 15.83 | 28796482 | |
29 | Phosphorylation | PHGPVVGSTRRLYEK CCCCCCCCCHHHHHH | 13.71 | 25159151 | |
30 | Phosphorylation | HGPVVGSTRRLYEKK CCCCCCCCHHHHHHH | 17.55 | 25159151 | |
34 | Phosphorylation | VGSTRRLYEKKIFEY CCCCHHHHHHHCHHH | 24.72 | 22817900 | |
37 | 2-Hydroxyisobutyrylation | TRRLYEKKIFEYETQ CHHHHHHHCHHHHHH | 40.46 | - | |
37 | Malonylation | TRRLYEKKIFEYETQ CHHHHHHHCHHHHHH | 40.46 | 26320211 | |
37 | Ubiquitination | TRRLYEKKIFEYETQ CHHHHHHHCHHHHHH | 40.46 | 29967540 | |
41 | Phosphorylation | YEKKIFEYETQRRRL HHHHCHHHHHHHHCC | 17.33 | 25884760 | |
43 | Phosphorylation | KKIFEYETQRRRLSP HHCHHHHHHHHCCCC | 26.86 | 26552605 | |
49 | O-linked_Glycosylation | ETQRRRLSPPSSSAA HHHHHCCCCCCCCCH | 32.71 | 30059200 | |
49 | Phosphorylation | ETQRRRLSPPSSSAA HHHHHCCCCCCCCCH | 32.71 | 22167270 | |
52 | Phosphorylation | RRRLSPPSSSAASSY HHCCCCCCCCCHHCC | 40.07 | 22167270 | |
53 | Phosphorylation | RRLSPPSSSAASSYS HCCCCCCCCCHHCCC | 29.75 | 22167270 | |
53 | O-linked_Glycosylation | RRLSPPSSSAASSYS HCCCCCCCCCHHCCC | 29.75 | 30059200 | |
54 | Phosphorylation | RLSPPSSSAASSYSF CCCCCCCCCHHCCCH | 31.99 | 22167270 | |
54 | O-linked_Glycosylation | RLSPPSSSAASSYSF CCCCCCCCCHHCCCH | 31.99 | 30059200 | |
57 | O-linked_Glycosylation | PPSSSAASSYSFSDL CCCCCCHHCCCHHHC | 29.53 | 30059200 | |
57 | Phosphorylation | PPSSSAASSYSFSDL CCCCCCHHCCCHHHC | 29.53 | 30278072 | |
58 | O-linked_Glycosylation | PSSSAASSYSFSDLN CCCCCHHCCCHHHCC | 21.77 | 30059200 | |
58 | Phosphorylation | PSSSAASSYSFSDLN CCCCCHHCCCHHHCC | 21.77 | 23927012 | |
59 | Phosphorylation | SSSAASSYSFSDLNS CCCCHHCCCHHHCCC | 15.96 | 23927012 | |
60 | Phosphorylation | SSAASSYSFSDLNST CCCHHCCCHHHCCCC | 21.88 | 25159151 | |
62 | O-linked_Glycosylation | AASSYSFSDLNSTRG CHHCCCHHHCCCCCC | 34.94 | 30059200 | |
62 | Phosphorylation | AASSYSFSDLNSTRG CHHCCCHHHCCCCCC | 34.94 | 23927012 | |
66 | Phosphorylation | YSFSDLNSTRGDADM CCHHHCCCCCCCCCH | 27.12 | 23927012 | |
66 | O-linked_Glycosylation | YSFSDLNSTRGDADM CCHHHCCCCCCCCCH | 27.12 | 30059200 | |
67 | Phosphorylation | SFSDLNSTRGDADMY CHHHCCCCCCCCCHH | 37.28 | 23927012 | |
73 | Sulfoxidation | STRGDADMYDLPKKE CCCCCCCHHCCCHHH | 2.76 | 21406390 | |
74 | Phosphorylation | TRGDADMYDLPKKED CCCCCCHHCCCHHHC | 18.18 | 28674151 | |
78 | Ubiquitination | ADMYDLPKKEDALLY CCHHCCCHHHCEEHH | 75.89 | 33845483 | |
78 | 2-Hydroxyisobutyrylation | ADMYDLPKKEDALLY CCHHCCCHHHCEEHH | 75.89 | - | |
79 | Ubiquitination | DMYDLPKKEDALLYQ CHHCCCHHHCEEHHH | 59.91 | 21906983 | |
79 | Acetylation | DMYDLPKKEDALLYQ CHHCCCHHHCEEHHH | 59.91 | 26051181 | |
79 | 2-Hydroxyisobutyrylation | DMYDLPKKEDALLYQ CHHCCCHHHCEEHHH | 59.91 | - | |
85 | Phosphorylation | KKEDALLYQSKGYND HHHCEEHHHCCCCCC | 16.16 | 30266825 | |
87 | O-linked_Glycosylation | EDALLYQSKGYNDDY HCEEHHHCCCCCCCC | 17.94 | 19691289 | |
87 | Phosphorylation | EDALLYQSKGYNDDY HCEEHHHCCCCCCCC | 17.94 | 30266825 | |
88 | Ubiquitination | DALLYQSKGYNDDYY CEEHHHCCCCCCCCC | 50.30 | 21906983 | |
88 | Ubiquitination | DALLYQSKGYNDDYY CEEHHHCCCCCCCCC | 50.30 | 21890473 | |
88 | 2-Hydroxyisobutyrylation | DALLYQSKGYNDDYY CEEHHHCCCCCCCCC | 50.30 | - | |
90 | Phosphorylation | LLYQSKGYNDDYYEE EHHHCCCCCCCCCCC | 21.10 | 24043423 | |
94 | Phosphorylation | SKGYNDDYYEESYFT CCCCCCCCCCCCCEE | 18.68 | 20007894 | |
95 | Phosphorylation | KGYNDDYYEESYFTT CCCCCCCCCCCCEEE | 21.88 | 20007894 | |
98 | Phosphorylation | NDDYYEESYFTTRTY CCCCCCCCCEEECCC | 17.38 | 25849741 | |
99 | Phosphorylation | DDYYEESYFTTRTYG CCCCCCCCEEECCCC | 14.28 | 24043423 | |
101 | Phosphorylation | YYEESYFTTRTYGEP CCCCCCEEECCCCCC | 13.72 | 28796482 | |
102 | Phosphorylation | YEESYFTTRTYGEPE CCCCCEEECCCCCCC | 15.89 | 28796482 | |
103 | Methylation | EESYFTTRTYGEPES CCCCEEECCCCCCCC | 23.93 | - | |
104 | Phosphorylation | ESYFTTRTYGEPESA CCCEEECCCCCCCCC | 33.51 | 28796482 | |
105 | Phosphorylation | SYFTTRTYGEPESAG CCEEECCCCCCCCCC | 19.05 | 21082442 | |
110 | Phosphorylation | RTYGEPESAGPSRAV CCCCCCCCCCCCHHH | 49.60 | 25159151 | |
114 | Phosphorylation | EPESAGPSRAVRQSV CCCCCCCCHHHHHHC | 31.77 | 28796482 | |
120 | Phosphorylation | PSRAVRQSVTSFPDA CCHHHHHHCCCCCCC | 19.46 | 23927012 | |
122 | Phosphorylation | RAVRQSVTSFPDADA HHHHHHCCCCCCCCH | 29.87 | 23927012 | |
123 | Phosphorylation | AVRQSVTSFPDADAF HHHHHCCCCCCCCHH | 32.40 | 23927012 | |
141 | Phosphorylation | VHDDDLLSSSEEECK CCCHHHHCCCHHHHH | 38.83 | 26503892 | |
142 | Phosphorylation | HDDDLLSSSEEECKD CCHHHHCCCHHHHHH | 41.56 | 26503892 | |
143 | Phosphorylation | DDDLLSSSEEECKDR CHHHHCCCHHHHHHC | 45.73 | 26503892 | |
148 | Ubiquitination | SSSEEECKDRERPMY CCCHHHHHHCCCCCC | 64.20 | 33845483 | |
155 | Phosphorylation | KDRERPMYGRDSAYQ HHCCCCCCCCCCHHH | 16.22 | 22817900 | |
159 | Phosphorylation | RPMYGRDSAYQSITH CCCCCCCCHHHHCCC | 27.75 | 23927012 | |
161 | Phosphorylation | MYGRDSAYQSITHYR CCCCCCHHHHCCCCC | 13.52 | 27273156 | |
163 | Phosphorylation | GRDSAYQSITHYRPV CCCCHHHHCCCCCCC | 19.44 | 25159151 | |
165 | Phosphorylation | DSAYQSITHYRPVSA CCHHHHCCCCCCCCC | 20.36 | 23401153 | |
167 | Phosphorylation | AYQSITHYRPVSASR HHHHCCCCCCCCCCC | 14.15 | 23459991 | |
171 | Phosphorylation | ITHYRPVSASRSSLD CCCCCCCCCCCCCCC | 24.18 | 22167270 | |
171 | O-linked_Glycosylation | ITHYRPVSASRSSLD CCCCCCCCCCCCCCC | 24.18 | 30059200 | |
173 | Phosphorylation | HYRPVSASRSSLDLS CCCCCCCCCCCCCCE | 25.78 | 22167270 | |
173 | O-linked_Glycosylation | HYRPVSASRSSLDLS CCCCCCCCCCCCCCE | 25.78 | 30059200 | |
175 | Phosphorylation | RPVSASRSSLDLSYY CCCCCCCCCCCCEEC | 32.53 | 28348404 | |
176 | Phosphorylation | PVSASRSSLDLSYYP CCCCCCCCCCCEECC | 25.45 | 25849741 | |
180 | Phosphorylation | SRSSLDLSYYPTSSS CCCCCCCEECCCCCC | 23.45 | 28450419 | |
181 | Phosphorylation | RSSLDLSYYPTSSST CCCCCCEECCCCCCC | 22.29 | 28450419 | |
182 | Phosphorylation | SSLDLSYYPTSSSTS CCCCCEECCCCCCCC | 9.17 | 28450419 | |
184 | Phosphorylation | LDLSYYPTSSSTSFM CCCEECCCCCCCCCC | 25.72 | 28450419 | |
185 | Phosphorylation | DLSYYPTSSSTSFMS CCEECCCCCCCCCCC | 20.14 | 28450419 | |
186 | Phosphorylation | LSYYPTSSSTSFMSS CEECCCCCCCCCCCC | 39.86 | 28450419 | |
187 | Phosphorylation | SYYPTSSSTSFMSSS EECCCCCCCCCCCCC | 28.04 | 28450419 | |
188 | Phosphorylation | YYPTSSSTSFMSSSS ECCCCCCCCCCCCCC | 28.12 | 26074081 | |
189 | Phosphorylation | YPTSSSTSFMSSSSS CCCCCCCCCCCCCCC | 22.39 | 26074081 | |
192 | Phosphorylation | SSSTSFMSSSSSSSS CCCCCCCCCCCCCCC | 25.67 | 27251275 | |
193 | Phosphorylation | SSTSFMSSSSSSSSW CCCCCCCCCCCCCCH | 23.58 | 27080861 | |
194 | Phosphorylation | STSFMSSSSSSSSWL CCCCCCCCCCCCCHH | 27.25 | 27080861 | |
195 | Phosphorylation | TSFMSSSSSSSSWLT CCCCCCCCCCCCHHH | 35.87 | 27080861 | |
196 | Phosphorylation | SFMSSSSSSSSWLTR CCCCCCCCCCCHHHH | 35.87 | 27080861 |
Modified Location | Modified Residue | Modification | Type of Upstream Proteins | Gene Name of Upstream Proteins | UniProt AC of Upstream Proteins | Sources |
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49 | S | Phosphorylation | Kinase | PRKACA | P17612 | GPS |
49 | S | Phosphorylation | Kinase | PKA-FAMILY | - | GPS |
49 | S | Phosphorylation | Kinase | PKA | - | Uniprot |
59 | Y | Phosphorylation | Kinase | SRC | P12931 | PSP |
74 | Y | Phosphorylation | Kinase | SRC | P12931 | PSP |
95 | Y | Phosphorylation | Kinase | SRC | P12931 | PSP |
167 | Y | Phosphorylation | Kinase | ABL1 | P00519 | GPS |
Modified Location | Modified Residue | Modification | Function | Reference | ||
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Oops, there are no descriptions of PTM sites of EMD_HUMAN !! |
* Distance = the distance between SAP position and PTM sites.
Modified Location | Modification | Variant Position (Distance <= 10) |
Residue Change | SAP | Related Disease | Reference |
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Oops, there are no SNP-PTM records of EMD_HUMAN !! |
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Acetylation | |
Reference | PubMed |
"Lys-N and trypsin cover complementary parts of the phosphoproteome ina refined SCX-based approach."; Gauci S., Helbig A.O., Slijper M., Krijgsveld J., Heck A.J.,Mohammed S.; Anal. Chem. 81:4493-4501(2009). Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT MET-1, AND MASS SPECTROMETRY. | |
Phosphorylation | |
Reference | PubMed |
"Quantitative phosphoproteomic analysis of T cell receptor signalingreveals system-wide modulation of protein-protein interactions."; Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K.,Rodionov V., Han D.K.; Sci. Signal. 2:RA46-RA46(2009). Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-49 AND SER-60, AND MASSSPECTROMETRY. | |
"Large-scale proteomics analysis of the human kinome."; Oppermann F.S., Gnad F., Olsen J.V., Hornberger R., Greff Z., Keri G.,Mann M., Daub H.; Mol. Cell. Proteomics 8:1751-1764(2009). Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-8; SER-49 AND SER-171,AND MASS SPECTROMETRY. | |
"A quantitative atlas of mitotic phosphorylation."; Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E.,Elledge S.J., Gygi S.P.; Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008). Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-49; SER-52; SER-54;SER-60; SER-66 AND SER-87, AND MASS SPECTROMETRY. | |
"Kinase-selective enrichment enables quantitative phosphoproteomics ofthe kinome across the cell cycle."; Daub H., Olsen J.V., Bairlein M., Gnad F., Oppermann F.S., Korner R.,Greff Z., Keri G., Stemmann O., Mann M.; Mol. Cell 31:438-448(2008). Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-8; SER-29 AND SER-49,AND MASS SPECTROMETRY. | |
"Combining protein-based IMAC, peptide-based IMAC, and MudPIT forefficient phosphoproteomic analysis."; Cantin G.T., Yi W., Lu B., Park S.K., Xu T., Lee J.-D.,Yates J.R. III; J. Proteome Res. 7:1346-1351(2008). Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-49; SER-54; TYR-59 ANDSER-60, AND MASS SPECTROMETRY. | |
"The Emery-Dreifuss muscular dystrophy associated-protein emerin isphosphorylated on serine 49 by protein kinase A."; Roberts R.C., Sutherland-Smith A.J., Wheeler M.A., Jensen O.N.,Emerson L.J., Spiliotis I.I., Tate C.G., Kendrick-Jones J.,Ellis J.A.; FEBS J. 273:4562-4575(2006). Cited for: PHOSPHORYLATION AT SER-49, SUBCELLULAR LOCATION, INTERACTION WITHLMNA, MASS SPECTROMETRY, AND MUTAGENESIS OF SER-49. | |
"Global, in vivo, and site-specific phosphorylation dynamics insignaling networks."; Olsen J.V., Blagoev B., Gnad F., Macek B., Kumar C., Mortensen P.,Mann M.; Cell 127:635-648(2006). Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-49; TYR-74; SER-120 ANDTYR-167, AND MASS SPECTROMETRY. | |
"Robust phosphoproteomic profiling of tyrosine phosphorylation sitesfrom human T cells using immobilized metal affinity chromatography andtandem mass spectrometry."; Brill L.M., Salomon A.R., Ficarro S.B., Mukherji M., Stettler-Gill M.,Peters E.C.; Anal. Chem. 76:2763-2772(2004). Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-163 AND TYR-167, ANDMASS SPECTROMETRY. | |
"Quantitative phosphoproteome analysis using a dendrimer conjugationchemistry and tandem mass spectrometry."; Tao W.A., Wollscheid B., O'Brien R., Eng J.K., Li X.-J.,Bodenmiller B., Watts J.D., Hood L., Aebersold R.; Nat. Methods 2:591-598(2005). Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-105, AND MASSSPECTROMETRY. | |
"Immunoaffinity profiling of tyrosine phosphorylation in cancercells."; Rush J., Moritz A., Lee K.A., Guo A., Goss V.L., Spek E.J., Zhang H.,Zha X.-M., Polakiewicz R.D., Comb M.J.; Nat. Biotechnol. 23:94-101(2005). Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-85; TYR-95 AND TYR-99,AND MASS SPECTROMETRY. | |
"Phosphoproteome analysis of HeLa cells using stable isotope labelingwith amino acids in cell culture (SILAC)."; Amanchy R., Kalume D.E., Iwahori A., Zhong J., Pandey A.; J. Proteome Res. 4:1661-1671(2005). Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-59; TYR-74; TYR-85;TYR-161 AND TYR-167, AND MASS SPECTROMETRY. |