CLR3_SCHPO - dbPTM
CLR3_SCHPO - PTM Information in dbPTM
Basic Information of Protein
UniProt ID CLR3_SCHPO
UniProt AC P56523
Protein Name Histone deacetylase clr3
Gene Name clr3
Organism Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast).
Sequence Length 687
Subcellular Localization Nucleus. Chromosome, centromere. Chromosome, telomere. Associates with major heterochromatin, centromeres, sub-telomeres, rDNA and the mat locus.
Protein Description Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes. Required for proper positioning of nucleosomes at heterochromatic loci and for transcriptional gene silencing (TGS) function of the Snf2/Hdac-containing repressor complex (SHREC)..
Protein Sequence MLASNSDGASTSVKPSDDAVNTVTPWSILLTNNKPMSGSENTLNNESHEMSQILKKSGLCYDPRMRFHATLSEVDDHPEDPRRVLRVFEAIKKAGYVSNVPSPSDVFLRIPAREATLEELLQVHSQEMYDRVTNTEKMSHEDLANLEKISDSLYYNNESAFCARLACGSAIETCTAVVTGQVKNAFAVVRPPGHHAEPHKPGGFCLFNNVSVTARSMLQRFPDKIKRVLIVDWDIHHGNGTQMAFYDDPNVLYVSLHRYENGRFYPGTNYGCAENCGEGPGLGRTVNIPWSCAGMGDGDYIYAFQRVVMPVAYEFDPDLVIVSCGFDAAAGDHIGQFLLTPAAYAHMTQMLMGLADGKVFISLEGGYNLDSISTSALAVAQSLLGIPPGRLHTTYACPQAVATINHVTKIQSQYWRCMRPKHFDANPKDAHVDRLHDVIRTYQAKKLFEDWKITNMPILRDSVSNVFNNQVLCSSNFFQKDNLLVIVHESPRVLGNGTSETNVLNLNDSLLVDPVSLYVEWAMQQDWGLIDINIPEVVTDGENAPVDILSEVKELCLYVWDNYVELSISKNIFFIGGGKAVHGLVNLASSRNVSDRVKCMVNFLGTEPLVGLKTASEEDLPTWYYRHSLVFVSSSNECWKKAKRAKRRYGRLMQSEHTETSDMMEQHYRAVTQYLLHLLQKARPTSQ
Overview of Protein Modification Sites with Functional and Structural Information
Experimental Post-Translational Modification Sites

* ASA = Accessible Surface Area

Locations Modification Substrate Peptides
&
Secondary Structure
ASA (%) Reference Orthologous
Protein Cluster

Oops, there are no PTM records of CLR3_SCHPO !!

Upstream regulatory proteins (kinases for phosphorylation sites, E3 ubiquitin ligases of ubiquitination sites, ...)
Modified Location Modified Residue Modification Type of Upstream Proteins Gene Name of Upstream Proteins UniProt AC of Upstream Proteins Sources

Oops, there are no upstream regulatory protein records of CLR3_SCHPO !!

Functions of PTM Sites
Modified Location Modified Residue Modification Function Reference

Oops, there are no descriptions of PTM sites of CLR3_SCHPO !!

Disease-associated PTM Sites based on SAP

* Distance = the distance between SAP position and PTM sites.

Modified Location Modification Variant Position
(Distance <= 10)
Residue Change SAP Related Disease Reference

Oops, there are no SNP-PTM records of CLR3_SCHPO !!

Protein-Protein Interaction
Interacting Protein Gene Name Interaction Type PPI Reference Domain-Domain Interactions
CLR4_SCHPOclr4genetic
11283354
SWI6_SCHPOswi6physical
16246721
ASH2_SCHPOash2genetic
18931302
CSN1_SCHPOcsn1genetic
18931302
PLMT_SCHPOcho1genetic
18931302
ELP3_SCHPOelp3genetic
18931302
MED27_SCHPOpmc3genetic
18931302
PHD1_SCHPOhos2genetic
18931302
YNVD_SCHPOfar10genetic
19547744
VPS36_SCHPOvps36genetic
19547744
VPS25_SCHPOvps25genetic
19547744
GMA12_SCHPOgma12genetic
19547744
YBKD_SCHPOgmh6genetic
19547744
DCR1_SCHPOdcr1genetic
20421495
RSC1_SCHPOrsc1genetic
20675407
ASF1_SCHPOcia1genetic
21211723
HIR1_SCHPOhip1genetic
21211723
CLR6_SCHPOclr6genetic
21253571
YEM8_SCHPOclr5genetic
21253571
TAS3_SCHPOtas3genetic
18818364
RIK1_SCHPOrik1genetic
18818364
PP2C2_SCHPOptc2genetic
18818364
HIF2_SCHPOhif2genetic
18818364
RPA12_SCHPOrpa12genetic
18818364
ERS1_SCHPOers1genetic
18818364
PEF1_SCHPOpef1genetic
18818364
HRR1_SCHPOhrr1genetic
18818364
SDC1_SCHPOsdc1genetic
18818364
DCR1_SCHPOdcr1genetic
18818364
BMT5_SCHPOSPCC1919.13cgenetic
18818364
SET1_SCHPOset1genetic
18818364
MU154_SCHPOmug154genetic
18818364
SPP1_SCHPOspf1genetic
18818364
RAF1_SCHPOraf1genetic
18818364
CID12_SCHPOcid12genetic
18818364
RNC1_SCHPOrnc1genetic
18818364
ELP2_SCHPOelp2genetic
18818364
ALP14_SCHPOalp14genetic
18818364
RAF2_SCHPOraf2genetic
18818364
JHD1_SCHPOepe1genetic
18818364
MLO3_SCHPOmlo3genetic
21892171
JHD1_SCHPOepe1genetic
12773576
DDB1_SCHPOddb1genetic
22681890
RIK1_SCHPOrik1genetic
22681890
RYH1_SCHPOryh1genetic
22681890
SFT1_SCHPOsft1genetic
22681890
NSE6_SCHPOnse6genetic
22681890
SWI6_SCHPOswi6genetic
22681890
BDC1_SCHPObdc1genetic
22681890
RAF2_SCHPOraf2genetic
22681890
PYP1_SCHPOpyp1genetic
22681890
ELP6_SCHPOelp6genetic
22681890
PDX1_SCHPOsnz1genetic
22681890
RT109_SCHPOrtt109genetic
22681890
RNC1_SCHPOrnc1genetic
22681890
APT_SCHPOapt1genetic
22681890
UBP8_SCHPOubp8genetic
22681890
YAC5_SCHPOcph1genetic
22681890
UFD2_SCHPOufd2genetic
22681890
RAD55_SCHPOrad55genetic
22681890
VIP1_SCHPOasp1genetic
22681890
PPT1_SCHPOSPBC3F6.01cgenetic
22681890
BST1_SCHPObst1genetic
22681890
YLO2_SCHPOtma23genetic
22681890
CHP1_SCHPOchp1genetic
22681890
SPP1_SCHPOspf1genetic
22681890
SWD1_SCHPOswd1genetic
22681890
GIT3_SCHPOgit3genetic
22681890
COM1_SCHPOctp1genetic
22681890
CSN1_SCHPOcsn1genetic
22681890
PHD1_SCHPOhos2genetic
22681890
SET3_SCHPOset3genetic
22681890
SGF73_SCHPOsgf73genetic
22681890
ASH2_SCHPOash2genetic
22681890
RAD57_SCHPOrad57genetic
22681890
YF19_SCHPOatd1genetic
22681890
GBB_SCHPOgit5genetic
22681890
GPA2_SCHPOgpa2genetic
22681890
JHD1_SCHPOepe1genetic
22681890
SNT2_SCHPOsnt2genetic
22681890
ELP3_SCHPOelp3genetic
22681890
ERS1_SCHPOers1genetic
22681890
RAF1_SCHPOraf1genetic
22681890
YIU1_SCHPOsaf5genetic
22681890
SET1_SCHPOset1genetic
22681890
PTPA1_SCHPOypa1genetic
22681890
YBPD_SCHPOSPBC16H5.13genetic
22681890
SHR3_SCHPOpsh3genetic
22681890
DAD2_SCHPOdad2genetic
22681890
IMA2_SCHPOimp1genetic
22681890
MU154_SCHPOmug154genetic
22681890
PVH1_SCHPOSPBC17A3.06genetic
22681890
SHF1_SCHPOshf1genetic
22681890
CLR3_SCHPOclr3physical
23695164
SIR2_SCHPOsir2genetic
23771057
SEB1_SCHPOseb1physical
24013500
GCN5_SCHPOgcn5genetic
24662054
MST2_SCHPOmst2genetic
24662054
CCQ1_SCHPOccq1physical
26365187
CLR3_SCHPOclr3physical
26771498
CLR3_SCHPOclr3physical
27105116
CCQ1_SCHPOccq1physical
26354422
TPZ1_SCHPOtpz1physical
26354422

Drug and Disease Associations
Kegg Drug
DrugBank
There are no disease associations of PTM sites.
Regulatory Network of CLR3_SCHPO

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Related Literatures of Post-Translational Modification

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