RBM39_HUMAN - dbPTM
RBM39_HUMAN - PTM Information in dbPTM
Basic Information of Protein
UniProt ID RBM39_HUMAN
UniProt AC Q14498
Protein Name RNA-binding protein 39
Gene Name RBM39
Organism Homo sapiens (Human).
Sequence Length 530
Subcellular Localization Nucleus speckle. Concentrated in nuclear speckles. Colocalizes with the core spliceosomal snRNP proteins.
Protein Description Transcriptional coactivator for steroid nuclear receptors ESR1/ER-alpha and ESR2/ER-beta, and JUN/AP-1 (By similarity). May be involved in pre-mRNA splicing process..
Protein Sequence MADDIDIEAMLEAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKERKRSRDRERKKSKSRERKRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIKLSRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASALAAAASVQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR
Overview of Protein Modification Sites with Functional and Structural Information
Experimental Post-Translational Modification Sites

* ASA = Accessible Surface Area

Locations Modification Substrate Peptides
&
Secondary Structure
ASA (%) Reference Orthologous
Protein Cluster
2Acetylation------MADDIDIEA
------CCCCCCHHH
24.1522223895
15PhosphorylationEAMLEAPYKKDENKL
HHHHCCCCCCCCCCC
37.4020068231
15 (in isoform 2)Phosphorylation-37.40-
16SumoylationAMLEAPYKKDENKLS
HHHCCCCCCCCCCCC
53.33-
16SumoylationAMLEAPYKKDENKLS
HHHCCCCCCCCCCCC
53.33-
21SumoylationPYKKDENKLSSANGH
CCCCCCCCCCCCCCC
47.93-
21SumoylationPYKKDENKLSSANGH
CCCCCCCCCCCCCCC
47.93-
21AcetylationPYKKDENKLSSANGH
CCCCCCCCCCCCCCC
47.9326051181
23PhosphorylationKKDENKLSSANGHEE
CCCCCCCCCCCCCHH
29.0730108239
24PhosphorylationKDENKLSSANGHEER
CCCCCCCCCCCCHHH
35.8720363803
24 (in isoform 2)Phosphorylation-35.87-
40PhosphorylationKKRKKSKSRSRSHER
HHHHHHHHHHHHHHH
42.4529743597
40 (in isoform 2)Phosphorylation-42.45-
42PhosphorylationRKKSKSRSRSHERKR
HHHHHHHHHHHHHHH
45.2729743597
44PhosphorylationKSKSRSRSHERKRSK
HHHHHHHHHHHHHHH
30.8329743597
44 (in isoform 2)Phosphorylation-30.83-
50PhosphorylationRSHERKRSKSKERKR
HHHHHHHHHHHHHHH
44.29-
58PhosphorylationKSKERKRSRDRERKK
HHHHHHHHHHHHHHH
41.3820068231
84PhosphorylationKERRRSRSRSRDRRF
HHHHHHHHHHHHHHH
35.5420068231
86PhosphorylationRRRSRSRSRDRRFRG
HHHHHHHHHHHHHHC
39.5220068231
95PhosphorylationDRRFRGRYRSPYSGP
HHHHHCCCCCCCCCC
20.4725463755
95 (in isoform 2)Phosphorylation-20.47-
95 (in isoform 3)Phosphorylation-20.4726699800
96MethylationRRFRGRYRSPYSGPK
HHHHCCCCCCCCCCC
29.78115491475
97PhosphorylationRFRGRYRSPYSGPKF
HHHCCCCCCCCCCCH
21.1822167270
97 (in isoform 2)Phosphorylation-21.18-
97 (in isoform 1)Phosphorylation-21.1824719451
97 (in isoform 3)Phosphorylation-21.1828355574
99PhosphorylationRGRYRSPYSGPKFNS
HCCCCCCCCCCCHHH
27.7522167270
99 (in isoform 2)Phosphorylation-27.75-
100PhosphorylationGRYRSPYSGPKFNSA
CCCCCCCCCCCHHHH
52.5922167270
100 (in isoform 2)Phosphorylation-52.59-
103AcetylationRSPYSGPKFNSAIRG
CCCCCCCCHHHHHHC
61.7825953088
106PhosphorylationYSGPKFNSAIRGKIG
CCCCCHHHHHHCCCC
28.3625159151
109DimethylationPKFNSAIRGKIGLPH
CCHHHHHHCCCCCCC
39.82-
109MethylationPKFNSAIRGKIGLPH
CCHHHHHHCCCCCCC
39.8212019201
111MethylationFNSAIRGKIGLPHSI
HHHHHHCCCCCCCCH
24.6123748837
111SumoylationFNSAIRGKIGLPHSI
HHHHHHCCCCCCCCH
24.6128112733
117PhosphorylationGKIGLPHSIKLSRRR
CCCCCCCCHHHHCCC
21.3425159151
117 (in isoform 2)Phosphorylation-21.34-
119SumoylationIGLPHSIKLSRRRSR
CCCCCCHHHHCCCCC
43.34-
119UbiquitinationIGLPHSIKLSRRRSR
CCCCCCHHHHCCCCC
43.3421890473
119SumoylationIGLPHSIKLSRRRSR
CCCCCCHHHHCCCCC
43.3428112733
119UbiquitinationIGLPHSIKLSRRRSR
CCCCCCHHHHCCCCC
43.3421890473
119AcetylationIGLPHSIKLSRRRSR
CCCCCCHHHHCCCCC
43.3425953088
119 (in isoform 1)Ubiquitination-43.3421890473
119 (in isoform 2)Ubiquitination-43.3421890473
121PhosphorylationLPHSIKLSRRRSRSK
CCCCHHHHCCCCCCC
20.8126055452
122MethylationPHSIKLSRRRSRSKS
CCCHHHHCCCCCCCC
48.7624391431
123MethylationHSIKLSRRRSRSKSP
CCHHHHCCCCCCCCC
37.2324391441
124MethylationSIKLSRRRSRSKSPF
CHHHHCCCCCCCCCC
35.0024391451
125PhosphorylationIKLSRRRSRSKSPFR
HHHHCCCCCCCCCCC
38.8122167270
127PhosphorylationLSRRRSRSKSPFRKD
HHCCCCCCCCCCCCC
38.4430266825
127 (in isoform 2)Phosphorylation-38.44-
129PhosphorylationRRRSRSKSPFRKDKS
CCCCCCCCCCCCCCC
30.4330266825
129 (in isoform 2)Phosphorylation-30.43-
136PhosphorylationSPFRKDKSPVREPID
CCCCCCCCCCCCCCC
38.4729255136
136 (in isoform 2)Phosphorylation-38.47-
146PhosphorylationREPIDNLTPEERDAR
CCCCCCCCHHHHHHH
34.6025159151
146 (in isoform 2)Phosphorylation-34.60-
154PhosphorylationPEERDARTVFCMQLA
HHHHHHHHHHHHHHH
21.4720068231
154 (in isoform 2)Phosphorylation-21.47-
157GlutathionylationRDARTVFCMQLAARI
HHHHHHHHHHHHHHC
1.1522555962
174PhosphorylationRDLEEFFSTVGKVRD
CCHHHHHHHCCCHHE
27.7521712546
178UbiquitinationEFFSTVGKVRDVRMI
HHHHHCCCHHEEEEE
29.7522053931
1782-HydroxyisobutyrylationEFFSTVGKVRDVRMI
HHHHHCCCHHEEEEE
29.75-
178UbiquitinationEFFSTVGKVRDVRMI
HHHHHCCCHHEEEEE
29.7521890473
178 (in isoform 1)Ubiquitination-29.7521890473
178 (in isoform 2)Ubiquitination-29.7521890473
183MethylationVGKVRDVRMISDRNS
CCCHHEEEEECCCCC
22.47115491467
186PhosphorylationVRDVRMISDRNSRRS
HHEEEEECCCCCCCC
22.6029449344
190PhosphorylationRMISDRNSRRSKGIA
EEECCCCCCCCCCEE
29.9328102081
193PhosphorylationSDRNSRRSKGIAYVE
CCCCCCCCCCEEEEE
33.8429496963
198PhosphorylationRRSKGIAYVEFVDVS
CCCCCEEEEEEEECC
9.8928122231
205PhosphorylationYVEFVDVSSVPLAIG
EEEEEECCCCCEEEE
22.5828122231
206PhosphorylationVEFVDVSSVPLAIGL
EEEEECCCCCEEEEC
27.8328122231
228PhosphorylationVPIIVQASQAEKNRA
CCEEEECHHHHHHHH
16.9021712546
232SumoylationVQASQAEKNRAAAMA
EECHHHHHHHHHHHH
55.54-
232UbiquitinationVQASQAEKNRAAAMA
EECHHHHHHHHHHHH
55.5421906983
232SumoylationVQASQAEKNRAAAMA
EECHHHHHHHHHHHH
55.54-
2322-HydroxyisobutyrylationVQASQAEKNRAAAMA
EECHHHHHHHHHHHH
55.54-
232AcetylationVQASQAEKNRAAAMA
EECHHHHHHHHHHHH
55.5425953088
232 (in isoform 1)Ubiquitination-55.5421890473
232 (in isoform 2)Ubiquitination-55.5421890473
244UbiquitinationAMANNLQKGSAGPMR
HHHHHHHCCCCCCCE
58.982190698
244SumoylationAMANNLQKGSAGPMR
HHHHHHHCCCCCCCE
58.9828112733
244 (in isoform 1)Ubiquitination-58.9821890473
244 (in isoform 2)Ubiquitination-58.9821890473
253PhosphorylationSAGPMRLYVGSLHFN
CCCCCEEEEEEEEEE
7.75-
282SulfoxidationRIESIQLMMDSETGR
CEEEEEEEEECCCCC
1.2821406390
291AcetylationDSETGRSKGYGFITF
ECCCCCCCCCEEEEE
55.5826051181
3052-HydroxyisobutyrylationFSDSECAKKALEQLN
ECCHHHHHHHHHHCC
50.68-
305AcetylationFSDSECAKKALEQLN
ECCHHHHHHHHHHCC
50.6826051181
306UbiquitinationSDSECAKKALEQLNG
CCHHHHHHHHHHCCC
39.41-
322UbiquitinationELAGRPMKVGHVTER
EECCCCCCCCCCEEC
47.98-
330PhosphorylationVGHVTERTDASSASS
CCCCEECCCCCHHHH
29.6830266825
330 (in isoform 2)Phosphorylation-29.68-
333PhosphorylationVTERTDASSASSFLD
CEECCCCCHHHHHCC
29.2823401153
334PhosphorylationTERTDASSASSFLDS
EECCCCCHHHHHCCH
33.6122617229
334 (in isoform 2)Phosphorylation-33.61-
336PhosphorylationRTDASSASSFLDSDE
CCCCCHHHHHCCHHH
24.4623401153
337PhosphorylationTDASSASSFLDSDEL
CCCCHHHHHCCHHHH
29.5530175587
337 (in isoform 2)Phosphorylation-29.55-
341PhosphorylationSASSFLDSDELERTG
HHHHHCCHHHHHHHC
34.8230266825
341 (in isoform 2)Phosphorylation-34.82-
346MethylationLDSDELERTGIDLGT
CCHHHHHHHCCCCCH
51.37115491459
347PhosphorylationDSDELERTGIDLGTT
CHHHHHHHCCCCCHH
29.1628450419
353PhosphorylationRTGIDLGTTGRLQLM
HHCCCCCHHHHHHHH
33.1223186163
354PhosphorylationTGIDLGTTGRLQLMA
HCCCCCHHHHHHHHH
20.6423917254
395 (in isoform 2)Phosphorylation-7.29-
469PhosphorylationHIYVDKNSAQGNVYV
EEEECCCCCCCCEEE
27.9220068231
475PhosphorylationNSAQGNVYVKCPSIA
CCCCCCEEEECHHHH
9.7420068231
477UbiquitinationAQGNVYVKCPSIAAA
CCCCEEEECHHHHHH
23.81-
477AcetylationAQGNVYVKCPSIAAA
CCCCEEEECHHHHHH
23.8126051181
478S-nitrosocysteineQGNVYVKCPSIAAAI
CCCEEEECHHHHHHH
1.97-
478S-nitrosylationQGNVYVKCPSIAAAI
CCCEEEECHHHHHHH
1.9722178444
505PhosphorylationGKMITAAYVPLPTYH
CCCEEEEEECCCCCC
10.51-

Upstream regulatory proteins (kinases for phosphorylation sites, E3 ubiquitin ligases of ubiquitination sites, ...)
Modified Location Modified Residue Modification Type of Upstream Proteins Gene Name of Upstream Proteins UniProt AC of Upstream Proteins Sources
95YPhosphorylationKinaseABL1P00519
GPS
99YPhosphorylationKinaseABL1P00519
GPS
-KUbiquitinationE3 ubiquitin ligaseDCAF15Q66K64
PMID:31819272

Functions of PTM Sites
Modified Location Modified Residue Modification Function Reference

Oops, there are no descriptions of PTM sites of RBM39_HUMAN !!

Disease-associated PTM Sites based on SAP

* Distance = the distance between SAP position and PTM sites.

Modified Location Modification Variant Position
(Distance <= 10)
Residue Change SAP Related Disease Reference

Oops, there are no SNP-PTM records of RBM39_HUMAN !!

Protein-Protein Interaction
Interacting Protein Gene Name Interaction Type PPI Reference Domain-Domain Interactions
ESR2_HUMANESR2physical
11704680
ESR1_HUMANESR1physical
11704680
JUN_HUMANJUNphysical
11704680
SND1_HUMANSND1physical
16051665
RS2_HUMANRPS2physical
16051665
RS3_HUMANRPS3physical
16051665
SRRM2_HUMANSRRM2physical
16051665
ACINU_HUMANACIN1physical
16051665
U520_HUMANSNRNP200physical
16051665
CDK12_HUMANCDK12physical
16051665
SRRM1_HUMANSRRM1physical
16051665
SF3B1_HUMANSF3B1physical
16051665
RBM25_HUMANRBM25physical
16051665
PININ_HUMANPNNphysical
16051665
U2AF2_HUMANU2AF2physical
16051665
PCBP3_HUMANPCBP3physical
16051665
TRA2B_HUMANTRA2Bphysical
16051665
LC7L2_HUMANLUC7L2physical
16051665
SRSF7_HUMANSRSF7physical
16051665
SRSF1_HUMANSRSF1physical
16051665
SAP18_HUMANSAP18physical
16051665
SMD1_HUMANSNRPD1physical
16051665
HNRPU_HUMANHNRNPUphysical
16051665
XRCC5_HUMANXRCC5physical
16051665
XRCC6_HUMANXRCC6physical
16051665
I2BP2_HUMANIRF2BP2physical
16051665
RS13_HUMANRPS13physical
16051665
RL27A_HUMANRPL27Aphysical
16051665
I2BPL_HUMANIRF2BPLphysical
16051665
ESR1_HUMANESR1physical
15694343
PRGR_HUMANPGRphysical
15694343
A4_HUMANAPPphysical
21832049
SMU1_HUMANSMU1physical
22939629
SPF27_HUMANBCAS2physical
22939629
SNUT2_HUMANUSP39physical
22939629
TOP1_HUMANTOP1physical
22939629
RRP7A_HUMANRRP7Aphysical
22939629
SEPT7_HUMANSEPT7physical
22939629
TR112_HUMANTRMT112physical
22939629
UT14A_HUMANUTP14Aphysical
22939629
S10A9_HUMANS100A9physical
22939629
RRS1_HUMANRRS1physical
22939629
SEPT2_HUMANSEPT2physical
22939629
VTNC_HUMANVTNphysical
22939629
RS14_HUMANRPS14physical
22939629
PR40A_HUMANPRPF40Aphysical
22365833
RBM25_HUMANRBM25physical
22365833
U2AF2_HUMANU2AF2physical
22365833
CHERP_HUMANCHERPphysical
22365833
RBM23_HUMANRBM23physical
22365833
PRPF3_HUMANPRPF3physical
22365833
PR38A_HUMANPRPF38Aphysical
22365833
SAP18_HUMANSAP18physical
22365833
S30BP_HUMANSAP30BPphysical
22365833
HNRH2_HUMANHNRNPH2physical
22365833
NKAP_HUMANNKAPphysical
22365833
TOE1_HUMANTOE1physical
22365833
TTC14_HUMANTTC14physical
22365833
ZCH10_HUMANZCCHC10physical
22365833
R113A_HUMANRNF113Aphysical
22365833
SRPK2_HUMANSRPK2physical
22365833
SF3B4_HUMANSF3B4physical
25416956
SAP18_HUMANSAP18physical
25416956
BLOM7_HUMANKIAA0907physical
25416956
AR6P4_HUMANARL6IP4physical
25416956
ZCH10_HUMANZCCHC10physical
25416956
BANP_HUMANBANPphysical
25416956
THAP1_HUMANTHAP1physical
25416956
CK057_HUMANC11orf57physical
25416956
PR40A_HUMANPRPF40Aphysical
25416956
HOMEZ_HUMANHOMEZphysical
25416956
KAD8_HUMANAK8physical
25416956
F200A_HUMANFAM200Aphysical
25416956
SR1IP_HUMANSREK1IP1physical
25416956
KR122_HUMANKRTAP12-2physical
25416956
PNISR_HUMANPNISRphysical
26344197
RBM14_HUMANRBM14physical
26344197
RNPS1_HUMANRNPS1physical
26344197
SON_HUMANSONphysical
26344197
SREK1_HUMANSREK1physical
26344197

Drug and Disease Associations
Kegg Disease
There are no disease associations of PTM sites.
OMIM Disease
There are no disease associations of PTM sites.
Kegg Drug
There are no disease associations of PTM sites.
DrugBank
There are no disease associations of PTM sites.
Regulatory Network of RBM39_HUMAN

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Related Literatures of Post-Translational Modification
Acetylation
ReferencePubMed
"Lys-N and trypsin cover complementary parts of the phosphoproteome ina refined SCX-based approach.";
Gauci S., Helbig A.O., Slijper M., Krijgsveld J., Heck A.J.,Mohammed S.;
Anal. Chem. 81:4493-4501(2009).
Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT ALA-2, PHOSPHORYLATION [LARGESCALE ANALYSIS] AT SER-97, AND MASS SPECTROMETRY.
Phosphorylation
ReferencePubMed
"Quantitative phosphoproteomic analysis of T cell receptor signalingreveals system-wide modulation of protein-protein interactions.";
Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K.,Rodionov V., Han D.K.;
Sci. Signal. 2:RA46-RA46(2009).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-136; SER-337 ANDSER-341, AND MASS SPECTROMETRY.
"Large-scale proteomics analysis of the human kinome.";
Oppermann F.S., Gnad F., Olsen J.V., Hornberger R., Greff Z., Keri G.,Mann M., Daub H.;
Mol. Cell. Proteomics 8:1751-1764(2009).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-136, AND MASSSPECTROMETRY.
"Lys-N and trypsin cover complementary parts of the phosphoproteome ina refined SCX-based approach.";
Gauci S., Helbig A.O., Slijper M., Krijgsveld J., Heck A.J.,Mohammed S.;
Anal. Chem. 81:4493-4501(2009).
Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT ALA-2, PHOSPHORYLATION [LARGESCALE ANALYSIS] AT SER-97, AND MASS SPECTROMETRY.
"A quantitative atlas of mitotic phosphorylation.";
Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E.,Elledge S.J., Gygi S.P.;
Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-95; SER-97; SER-100;SER-117; SER-136; SER-334; SER-337 AND SER-341, AND MASS SPECTROMETRY.
"Kinase-selective enrichment enables quantitative phosphoproteomics ofthe kinome across the cell cycle.";
Daub H., Olsen J.V., Bairlein M., Gnad F., Oppermann F.S., Korner R.,Greff Z., Keri G., Stemmann O., Mann M.;
Mol. Cell 31:438-448(2008).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-97 AND SER-136, AND MASSSPECTROMETRY.
"Phosphorylation analysis of primary human T lymphocytes usingsequential IMAC and titanium oxide enrichment.";
Carrascal M., Ovelleiro D., Casas V., Gay M., Abian J.;
J. Proteome Res. 7:5167-5176(2008).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-97, AND MASSSPECTROMETRY.
"Combining protein-based IMAC, peptide-based IMAC, and MudPIT forefficient phosphoproteomic analysis.";
Cantin G.T., Yi W., Lu B., Park S.K., Xu T., Lee J.-D.,Yates J.R. III;
J. Proteome Res. 7:1346-1351(2008).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-136, AND MASSSPECTROMETRY.
"Automated phosphoproteome analysis for cultured cancer cells by two-dimensional nanoLC-MS using a calcined titania/C18 biphasic column.";
Imami K., Sugiyama N., Kyono Y., Tomita M., Ishihama Y.;
Anal. Sci. 24:161-166(2008).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-97 AND SER-136, AND MASSSPECTROMETRY.
"Evaluation of the low-specificity protease elastase for large-scalephosphoproteome analysis.";
Wang B., Malik R., Nigg E.A., Korner R.;
Anal. Chem. 80:9526-9533(2008).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-97 AND THR-146, AND MASSSPECTROMETRY.
"Improved titanium dioxide enrichment of phosphopeptides from HeLacells and high confident phosphopeptide identification by cross-validation of MS/MS and MS/MS/MS spectra.";
Yu L.-R., Zhu Z., Chan K.C., Issaq H.J., Dimitrov D.S., Veenstra T.D.;
J. Proteome Res. 6:4150-4162(2007).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-136, AND MASSSPECTROMETRY.
"Toward a global characterization of the phosphoproteome in prostatecancer cells: identification of phosphoproteins in the LNCaP cellline.";
Giorgianni F., Zhao Y., Desiderio D.M., Beranova-Giorgianni S.;
Electrophoresis 28:2027-2034(2007).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-136, AND MASSSPECTROMETRY.
"Global, in vivo, and site-specific phosphorylation dynamics insignaling networks.";
Olsen J.V., Blagoev B., Gnad F., Macek B., Kumar C., Mortensen P.,Mann M.;
Cell 127:635-648(2006).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-97; SER-127; SER-129 ANDSER-136, AND MASS SPECTROMETRY.

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