UniProt ID | RBM39_HUMAN | |
---|---|---|
UniProt AC | Q14498 | |
Protein Name | RNA-binding protein 39 | |
Gene Name | RBM39 | |
Organism | Homo sapiens (Human). | |
Sequence Length | 530 | |
Subcellular Localization | Nucleus speckle. Concentrated in nuclear speckles. Colocalizes with the core spliceosomal snRNP proteins. | |
Protein Description | Transcriptional coactivator for steroid nuclear receptors ESR1/ER-alpha and ESR2/ER-beta, and JUN/AP-1 (By similarity). May be involved in pre-mRNA splicing process.. | |
Protein Sequence | MADDIDIEAMLEAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKERKRSRDRERKKSKSRERKRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIKLSRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASALAAAASVQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR | |
Overview of Protein Modification Sites with Functional and Structural Information | ||
* ASA = Accessible Surface Area
Locations | Modification | Substrate Peptides & Secondary Structure |
ASA (%) | Reference | Orthologous Protein Cluster |
---|---|---|---|---|---|
2 | Acetylation | ------MADDIDIEA ------CCCCCCHHH | 24.15 | 22223895 | |
15 | Phosphorylation | EAMLEAPYKKDENKL HHHHCCCCCCCCCCC | 37.40 | 20068231 | |
15 (in isoform 2) | Phosphorylation | - | 37.40 | - | |
16 | Sumoylation | AMLEAPYKKDENKLS HHHCCCCCCCCCCCC | 53.33 | - | |
16 | Sumoylation | AMLEAPYKKDENKLS HHHCCCCCCCCCCCC | 53.33 | - | |
21 | Sumoylation | PYKKDENKLSSANGH CCCCCCCCCCCCCCC | 47.93 | - | |
21 | Sumoylation | PYKKDENKLSSANGH CCCCCCCCCCCCCCC | 47.93 | - | |
21 | Acetylation | PYKKDENKLSSANGH CCCCCCCCCCCCCCC | 47.93 | 26051181 | |
23 | Phosphorylation | KKDENKLSSANGHEE CCCCCCCCCCCCCHH | 29.07 | 30108239 | |
24 | Phosphorylation | KDENKLSSANGHEER CCCCCCCCCCCCHHH | 35.87 | 20363803 | |
24 (in isoform 2) | Phosphorylation | - | 35.87 | - | |
40 | Phosphorylation | KKRKKSKSRSRSHER HHHHHHHHHHHHHHH | 42.45 | 29743597 | |
40 (in isoform 2) | Phosphorylation | - | 42.45 | - | |
42 | Phosphorylation | RKKSKSRSRSHERKR HHHHHHHHHHHHHHH | 45.27 | 29743597 | |
44 | Phosphorylation | KSKSRSRSHERKRSK HHHHHHHHHHHHHHH | 30.83 | 29743597 | |
44 (in isoform 2) | Phosphorylation | - | 30.83 | - | |
50 | Phosphorylation | RSHERKRSKSKERKR HHHHHHHHHHHHHHH | 44.29 | - | |
58 | Phosphorylation | KSKERKRSRDRERKK HHHHHHHHHHHHHHH | 41.38 | 20068231 | |
84 | Phosphorylation | KERRRSRSRSRDRRF HHHHHHHHHHHHHHH | 35.54 | 20068231 | |
86 | Phosphorylation | RRRSRSRSRDRRFRG HHHHHHHHHHHHHHC | 39.52 | 20068231 | |
95 | Phosphorylation | DRRFRGRYRSPYSGP HHHHHCCCCCCCCCC | 20.47 | 25463755 | |
95 (in isoform 2) | Phosphorylation | - | 20.47 | - | |
95 (in isoform 3) | Phosphorylation | - | 20.47 | 26699800 | |
96 | Methylation | RRFRGRYRSPYSGPK HHHHCCCCCCCCCCC | 29.78 | 115491475 | |
97 | Phosphorylation | RFRGRYRSPYSGPKF HHHCCCCCCCCCCCH | 21.18 | 22167270 | |
97 (in isoform 2) | Phosphorylation | - | 21.18 | - | |
97 (in isoform 1) | Phosphorylation | - | 21.18 | 24719451 | |
97 (in isoform 3) | Phosphorylation | - | 21.18 | 28355574 | |
99 | Phosphorylation | RGRYRSPYSGPKFNS HCCCCCCCCCCCHHH | 27.75 | 22167270 | |
99 (in isoform 2) | Phosphorylation | - | 27.75 | - | |
100 | Phosphorylation | GRYRSPYSGPKFNSA CCCCCCCCCCCHHHH | 52.59 | 22167270 | |
100 (in isoform 2) | Phosphorylation | - | 52.59 | - | |
103 | Acetylation | RSPYSGPKFNSAIRG CCCCCCCCHHHHHHC | 61.78 | 25953088 | |
106 | Phosphorylation | YSGPKFNSAIRGKIG CCCCCHHHHHHCCCC | 28.36 | 25159151 | |
109 | Dimethylation | PKFNSAIRGKIGLPH CCHHHHHHCCCCCCC | 39.82 | - | |
109 | Methylation | PKFNSAIRGKIGLPH CCHHHHHHCCCCCCC | 39.82 | 12019201 | |
111 | Methylation | FNSAIRGKIGLPHSI HHHHHHCCCCCCCCH | 24.61 | 23748837 | |
111 | Sumoylation | FNSAIRGKIGLPHSI HHHHHHCCCCCCCCH | 24.61 | 28112733 | |
117 | Phosphorylation | GKIGLPHSIKLSRRR CCCCCCCCHHHHCCC | 21.34 | 25159151 | |
117 (in isoform 2) | Phosphorylation | - | 21.34 | - | |
119 | Sumoylation | IGLPHSIKLSRRRSR CCCCCCHHHHCCCCC | 43.34 | - | |
119 | Ubiquitination | IGLPHSIKLSRRRSR CCCCCCHHHHCCCCC | 43.34 | 21890473 | |
119 | Sumoylation | IGLPHSIKLSRRRSR CCCCCCHHHHCCCCC | 43.34 | 28112733 | |
119 | Ubiquitination | IGLPHSIKLSRRRSR CCCCCCHHHHCCCCC | 43.34 | 21890473 | |
119 | Acetylation | IGLPHSIKLSRRRSR CCCCCCHHHHCCCCC | 43.34 | 25953088 | |
119 (in isoform 1) | Ubiquitination | - | 43.34 | 21890473 | |
119 (in isoform 2) | Ubiquitination | - | 43.34 | 21890473 | |
121 | Phosphorylation | LPHSIKLSRRRSRSK CCCCHHHHCCCCCCC | 20.81 | 26055452 | |
122 | Methylation | PHSIKLSRRRSRSKS CCCHHHHCCCCCCCC | 48.76 | 24391431 | |
123 | Methylation | HSIKLSRRRSRSKSP CCHHHHCCCCCCCCC | 37.23 | 24391441 | |
124 | Methylation | SIKLSRRRSRSKSPF CHHHHCCCCCCCCCC | 35.00 | 24391451 | |
125 | Phosphorylation | IKLSRRRSRSKSPFR HHHHCCCCCCCCCCC | 38.81 | 22167270 | |
127 | Phosphorylation | LSRRRSRSKSPFRKD HHCCCCCCCCCCCCC | 38.44 | 30266825 | |
127 (in isoform 2) | Phosphorylation | - | 38.44 | - | |
129 | Phosphorylation | RRRSRSKSPFRKDKS CCCCCCCCCCCCCCC | 30.43 | 30266825 | |
129 (in isoform 2) | Phosphorylation | - | 30.43 | - | |
136 | Phosphorylation | SPFRKDKSPVREPID CCCCCCCCCCCCCCC | 38.47 | 29255136 | |
136 (in isoform 2) | Phosphorylation | - | 38.47 | - | |
146 | Phosphorylation | REPIDNLTPEERDAR CCCCCCCCHHHHHHH | 34.60 | 25159151 | |
146 (in isoform 2) | Phosphorylation | - | 34.60 | - | |
154 | Phosphorylation | PEERDARTVFCMQLA HHHHHHHHHHHHHHH | 21.47 | 20068231 | |
154 (in isoform 2) | Phosphorylation | - | 21.47 | - | |
157 | Glutathionylation | RDARTVFCMQLAARI HHHHHHHHHHHHHHC | 1.15 | 22555962 | |
174 | Phosphorylation | RDLEEFFSTVGKVRD CCHHHHHHHCCCHHE | 27.75 | 21712546 | |
178 | Ubiquitination | EFFSTVGKVRDVRMI HHHHHCCCHHEEEEE | 29.75 | 22053931 | |
178 | 2-Hydroxyisobutyrylation | EFFSTVGKVRDVRMI HHHHHCCCHHEEEEE | 29.75 | - | |
178 | Ubiquitination | EFFSTVGKVRDVRMI HHHHHCCCHHEEEEE | 29.75 | 21890473 | |
178 (in isoform 1) | Ubiquitination | - | 29.75 | 21890473 | |
178 (in isoform 2) | Ubiquitination | - | 29.75 | 21890473 | |
183 | Methylation | VGKVRDVRMISDRNS CCCHHEEEEECCCCC | 22.47 | 115491467 | |
186 | Phosphorylation | VRDVRMISDRNSRRS HHEEEEECCCCCCCC | 22.60 | 29449344 | |
190 | Phosphorylation | RMISDRNSRRSKGIA EEECCCCCCCCCCEE | 29.93 | 28102081 | |
193 | Phosphorylation | SDRNSRRSKGIAYVE CCCCCCCCCCEEEEE | 33.84 | 29496963 | |
198 | Phosphorylation | RRSKGIAYVEFVDVS CCCCCEEEEEEEECC | 9.89 | 28122231 | |
205 | Phosphorylation | YVEFVDVSSVPLAIG EEEEEECCCCCEEEE | 22.58 | 28122231 | |
206 | Phosphorylation | VEFVDVSSVPLAIGL EEEEECCCCCEEEEC | 27.83 | 28122231 | |
228 | Phosphorylation | VPIIVQASQAEKNRA CCEEEECHHHHHHHH | 16.90 | 21712546 | |
232 | Sumoylation | VQASQAEKNRAAAMA EECHHHHHHHHHHHH | 55.54 | - | |
232 | Ubiquitination | VQASQAEKNRAAAMA EECHHHHHHHHHHHH | 55.54 | 21906983 | |
232 | Sumoylation | VQASQAEKNRAAAMA EECHHHHHHHHHHHH | 55.54 | - | |
232 | 2-Hydroxyisobutyrylation | VQASQAEKNRAAAMA EECHHHHHHHHHHHH | 55.54 | - | |
232 | Acetylation | VQASQAEKNRAAAMA EECHHHHHHHHHHHH | 55.54 | 25953088 | |
232 (in isoform 1) | Ubiquitination | - | 55.54 | 21890473 | |
232 (in isoform 2) | Ubiquitination | - | 55.54 | 21890473 | |
244 | Ubiquitination | AMANNLQKGSAGPMR HHHHHHHCCCCCCCE | 58.98 | 2190698 | |
244 | Sumoylation | AMANNLQKGSAGPMR HHHHHHHCCCCCCCE | 58.98 | 28112733 | |
244 (in isoform 1) | Ubiquitination | - | 58.98 | 21890473 | |
244 (in isoform 2) | Ubiquitination | - | 58.98 | 21890473 | |
253 | Phosphorylation | SAGPMRLYVGSLHFN CCCCCEEEEEEEEEE | 7.75 | - | |
282 | Sulfoxidation | RIESIQLMMDSETGR CEEEEEEEEECCCCC | 1.28 | 21406390 | |
291 | Acetylation | DSETGRSKGYGFITF ECCCCCCCCCEEEEE | 55.58 | 26051181 | |
305 | 2-Hydroxyisobutyrylation | FSDSECAKKALEQLN ECCHHHHHHHHHHCC | 50.68 | - | |
305 | Acetylation | FSDSECAKKALEQLN ECCHHHHHHHHHHCC | 50.68 | 26051181 | |
306 | Ubiquitination | SDSECAKKALEQLNG CCHHHHHHHHHHCCC | 39.41 | - | |
322 | Ubiquitination | ELAGRPMKVGHVTER EECCCCCCCCCCEEC | 47.98 | - | |
330 | Phosphorylation | VGHVTERTDASSASS CCCCEECCCCCHHHH | 29.68 | 30266825 | |
330 (in isoform 2) | Phosphorylation | - | 29.68 | - | |
333 | Phosphorylation | VTERTDASSASSFLD CEECCCCCHHHHHCC | 29.28 | 23401153 | |
334 | Phosphorylation | TERTDASSASSFLDS EECCCCCHHHHHCCH | 33.61 | 22617229 | |
334 (in isoform 2) | Phosphorylation | - | 33.61 | - | |
336 | Phosphorylation | RTDASSASSFLDSDE CCCCCHHHHHCCHHH | 24.46 | 23401153 | |
337 | Phosphorylation | TDASSASSFLDSDEL CCCCHHHHHCCHHHH | 29.55 | 30175587 | |
337 (in isoform 2) | Phosphorylation | - | 29.55 | - | |
341 | Phosphorylation | SASSFLDSDELERTG HHHHHCCHHHHHHHC | 34.82 | 30266825 | |
341 (in isoform 2) | Phosphorylation | - | 34.82 | - | |
346 | Methylation | LDSDELERTGIDLGT CCHHHHHHHCCCCCH | 51.37 | 115491459 | |
347 | Phosphorylation | DSDELERTGIDLGTT CHHHHHHHCCCCCHH | 29.16 | 28450419 | |
353 | Phosphorylation | RTGIDLGTTGRLQLM HHCCCCCHHHHHHHH | 33.12 | 23186163 | |
354 | Phosphorylation | TGIDLGTTGRLQLMA HCCCCCHHHHHHHHH | 20.64 | 23917254 | |
395 (in isoform 2) | Phosphorylation | - | 7.29 | - | |
469 | Phosphorylation | HIYVDKNSAQGNVYV EEEECCCCCCCCEEE | 27.92 | 20068231 | |
475 | Phosphorylation | NSAQGNVYVKCPSIA CCCCCCEEEECHHHH | 9.74 | 20068231 | |
477 | Ubiquitination | AQGNVYVKCPSIAAA CCCCEEEECHHHHHH | 23.81 | - | |
477 | Acetylation | AQGNVYVKCPSIAAA CCCCEEEECHHHHHH | 23.81 | 26051181 | |
478 | S-nitrosocysteine | QGNVYVKCPSIAAAI CCCEEEECHHHHHHH | 1.97 | - | |
478 | S-nitrosylation | QGNVYVKCPSIAAAI CCCEEEECHHHHHHH | 1.97 | 22178444 | |
505 | Phosphorylation | GKMITAAYVPLPTYH CCCEEEEEECCCCCC | 10.51 | - |
Modified Location | Modified Residue | Modification | Function | Reference | ||
---|---|---|---|---|---|---|
Oops, there are no descriptions of PTM sites of RBM39_HUMAN !! |
* Distance = the distance between SAP position and PTM sites.
Modified Location | Modification | Variant Position (Distance <= 10) |
Residue Change | SAP | Related Disease | Reference |
---|---|---|---|---|---|---|
Oops, there are no SNP-PTM records of RBM39_HUMAN !! |
Kegg Disease | ||||||
---|---|---|---|---|---|---|
There are no disease associations of PTM sites. | ||||||
OMIM Disease | ||||||
There are no disease associations of PTM sites. | ||||||
Kegg Drug | ||||||
There are no disease associations of PTM sites. | ||||||
DrugBank | ||||||
There are no disease associations of PTM sites. |
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Acetylation | |
Reference | PubMed |
"Lys-N and trypsin cover complementary parts of the phosphoproteome ina refined SCX-based approach."; Gauci S., Helbig A.O., Slijper M., Krijgsveld J., Heck A.J.,Mohammed S.; Anal. Chem. 81:4493-4501(2009). Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT ALA-2, PHOSPHORYLATION [LARGESCALE ANALYSIS] AT SER-97, AND MASS SPECTROMETRY. | |
Phosphorylation | |
Reference | PubMed |
"Quantitative phosphoproteomic analysis of T cell receptor signalingreveals system-wide modulation of protein-protein interactions."; Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K.,Rodionov V., Han D.K.; Sci. Signal. 2:RA46-RA46(2009). Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-136; SER-337 ANDSER-341, AND MASS SPECTROMETRY. | |
"Large-scale proteomics analysis of the human kinome."; Oppermann F.S., Gnad F., Olsen J.V., Hornberger R., Greff Z., Keri G.,Mann M., Daub H.; Mol. Cell. Proteomics 8:1751-1764(2009). Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-136, AND MASSSPECTROMETRY. | |
"Lys-N and trypsin cover complementary parts of the phosphoproteome ina refined SCX-based approach."; Gauci S., Helbig A.O., Slijper M., Krijgsveld J., Heck A.J.,Mohammed S.; Anal. Chem. 81:4493-4501(2009). Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT ALA-2, PHOSPHORYLATION [LARGESCALE ANALYSIS] AT SER-97, AND MASS SPECTROMETRY. | |
"A quantitative atlas of mitotic phosphorylation."; Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E.,Elledge S.J., Gygi S.P.; Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008). Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-95; SER-97; SER-100;SER-117; SER-136; SER-334; SER-337 AND SER-341, AND MASS SPECTROMETRY. | |
"Kinase-selective enrichment enables quantitative phosphoproteomics ofthe kinome across the cell cycle."; Daub H., Olsen J.V., Bairlein M., Gnad F., Oppermann F.S., Korner R.,Greff Z., Keri G., Stemmann O., Mann M.; Mol. Cell 31:438-448(2008). Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-97 AND SER-136, AND MASSSPECTROMETRY. | |
"Phosphorylation analysis of primary human T lymphocytes usingsequential IMAC and titanium oxide enrichment."; Carrascal M., Ovelleiro D., Casas V., Gay M., Abian J.; J. Proteome Res. 7:5167-5176(2008). Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-97, AND MASSSPECTROMETRY. | |
"Combining protein-based IMAC, peptide-based IMAC, and MudPIT forefficient phosphoproteomic analysis."; Cantin G.T., Yi W., Lu B., Park S.K., Xu T., Lee J.-D.,Yates J.R. III; J. Proteome Res. 7:1346-1351(2008). Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-136, AND MASSSPECTROMETRY. | |
"Automated phosphoproteome analysis for cultured cancer cells by two-dimensional nanoLC-MS using a calcined titania/C18 biphasic column."; Imami K., Sugiyama N., Kyono Y., Tomita M., Ishihama Y.; Anal. Sci. 24:161-166(2008). Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-97 AND SER-136, AND MASSSPECTROMETRY. | |
"Evaluation of the low-specificity protease elastase for large-scalephosphoproteome analysis."; Wang B., Malik R., Nigg E.A., Korner R.; Anal. Chem. 80:9526-9533(2008). Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-97 AND THR-146, AND MASSSPECTROMETRY. | |
"Improved titanium dioxide enrichment of phosphopeptides from HeLacells and high confident phosphopeptide identification by cross-validation of MS/MS and MS/MS/MS spectra."; Yu L.-R., Zhu Z., Chan K.C., Issaq H.J., Dimitrov D.S., Veenstra T.D.; J. Proteome Res. 6:4150-4162(2007). Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-136, AND MASSSPECTROMETRY. | |
"Toward a global characterization of the phosphoproteome in prostatecancer cells: identification of phosphoproteins in the LNCaP cellline."; Giorgianni F., Zhao Y., Desiderio D.M., Beranova-Giorgianni S.; Electrophoresis 28:2027-2034(2007). Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-136, AND MASSSPECTROMETRY. | |
"Global, in vivo, and site-specific phosphorylation dynamics insignaling networks."; Olsen J.V., Blagoev B., Gnad F., Macek B., Kumar C., Mortensen P.,Mann M.; Cell 127:635-648(2006). Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-97; SER-127; SER-129 ANDSER-136, AND MASS SPECTROMETRY. |