UniProt ID | PDC1_YEAST | |
---|---|---|
UniProt AC | P06169 | |
Protein Name | Pyruvate decarboxylase isozyme 1 | |
Gene Name | PDC1 | |
Organism | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast). | |
Sequence Length | 563 | |
Subcellular Localization | Cytoplasm . Nucleus . | |
Protein Description | Major of three pyruvate decarboxylases (PDC1, PDC5, PDC6) implicated in the nonoxidative conversion of pyruvate to acetaldehyde and carbon dioxide during alcoholic fermentation. Most of the produced acetaldehyde is subsequently reduced to ethanol, but some is required for cytosolic acetyl-CoA production for biosynthetic pathways. The enzyme is also one of five 2-oxo acid decarboxylases (PDC1, PDC5, PDC6, ARO10, and THI3) able to decarboxylate more complex 2-oxo acids (alpha-ketoacids) than pyruvate, which seem mainly involved in amino acid catabolism. Here the enzyme catalyzes the decarboxylation of amino acids, which, in a first step, have been transaminated to the corresponding 2-oxo acids. In a third step, the resulting aldehydes are reduced to alcohols, collectively referred to as fusel oils or alcohols. Its preferred substrates are the transaminated amino acids derived from threonine (2-oxobutanoate), norvaline (2-oxopentanoate), valine (3-methyl-2-oxobutanoate, also alpha-keto-isovalerate), isoleucine ((3S)-3-methyl-2-oxopentanoate, also alpha-keto-beta-methylvalerate), phenylalanine (phenylpyruvate), and tryptophan (3-(indol-3-yl)pyruvate), whereas transaminated leucine is no substrate. In a side-reaction the carbanionic intermediate (or active aldehyde) generated by decarboxylation or by activation of an aldehyde can react with an aldehyde via condensation (or carboligation) yielding a 2-hydroxy ketone, collectively called acyloins.. | |
Protein Sequence | MSEITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYARIKGMSCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGDFTVFHRMSANISETTAMITDIATAPAEIDRCIRTTYVTQRPVYLGLPANLVDLNVPAKLLQTPIDMSLKPNDAESEKEVIDTILALVKDAKNPVILADACCSRHDVKAETKKLIDLTQFPAFVTPMGKGSIDEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGALLSDFNTGSFSYSYKTKNIVEFHSDHMKIRNATFPGVQMKFVLQKLLTTIADAAKGYKPVAVPARTPANAAVPASTPLKQEWMWNQLGNFLQEGDVVIAETGTSAFGINQTTFPNNTYGISQVLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFVLNNDGYTIEKLIHGPKAQYNEIQGWDHLSLLPTFGAKDYETHRVATTGEWDKLTQDKSFNDNSKIRMIEIMLPVFDAPQNLVEQAKLTAATNAKQ | |
Overview of Protein Modification Sites with Functional and Structural Information | ||
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* ASA = Accessible Surface Area
Locations | Modification | Substrate Peptides & Secondary Structure |
ASA (%) | Reference | Orthologous Protein Cluster |
---|---|---|---|---|---|
2 | Acetylation | ------MSEITLGKY ------CCCCHHHHH | 37.39 | 9298649 | |
2 | Phosphorylation | ------MSEITLGKY ------CCCCHHHHH | 37.39 | 28152593 | |
5 | Phosphorylation | ---MSEITLGKYLFE ---CCCCHHHHHHHH | 25.96 | 19823750 | |
8 | 2-Hydroxyisobutyrylation | MSEITLGKYLFERLK CCCCHHHHHHHHHHH | 41.72 | - | |
8 | Acetylation | MSEITLGKYLFERLK CCCCHHHHHHHHHHH | 41.72 | 24489116 | |
8 | Succinylation | MSEITLGKYLFERLK CCCCHHHHHHHHHHH | 41.72 | 23954790 | |
8 | Ubiquitination | MSEITLGKYLFERLK CCCCHHHHHHHHHHH | 41.72 | 24961812 | |
9 | Phosphorylation | SEITLGKYLFERLKQ CCCHHHHHHHHHHHC | 18.15 | 21440633 | |
36 | Ubiquitination | FNLSLLDKIYEVEGM CCHHHHHHHEEECCC | 47.35 | 15699485 | |
129 | Phosphorylation | FTVFHRMSANISETT EEEEEEEECCCCCCE | 20.37 | 22369663 | |
133 | Phosphorylation | HRMSANISETTAMIT EEEECCCCCCEEEEE | 28.79 | 19779198 | |
135 | Phosphorylation | MSANISETTAMITDI EECCCCCCEEEEEHH | 17.05 | 22369663 | |
136 | Phosphorylation | SANISETTAMITDIA ECCCCCCEEEEEHHH | 15.35 | 22369663 | |
140 | Phosphorylation | SETTAMITDIATAPA CCCEEEEEHHHCCHH | 14.31 | 22369663 | |
144 | Phosphorylation | AMITDIATAPAEIDR EEEEHHHCCHHHHHH | 33.24 | 19779198 | |
155 | Phosphorylation | EIDRCIRTTYVTQRP HHHHHHCCEECCCCC | 11.54 | 28889911 | |
156 | Phosphorylation | IDRCIRTTYVTQRPV HHHHHCCEECCCCCE | 13.22 | 29688323 | |
157 | Phosphorylation | DRCIRTTYVTQRPVY HHHHCCEECCCCCEE | 10.82 | 21440633 | |
159 | Phosphorylation | CIRTTYVTQRPVYLG HHCCEECCCCCEECC | 14.40 | 21440633 | |
164 | Phosphorylation | YVTQRPVYLGLPANL ECCCCCEECCCCCCC | 9.57 | 29688323 | |
179 | Ubiquitination | VDLNVPAKLLQTPID CCCCCCHHHHCCCCC | 43.59 | 24961812 | |
183 | Phosphorylation | VPAKLLQTPIDMSLK CCHHHHCCCCCCCCC | 23.37 | 22369663 | |
188 | Phosphorylation | LQTPIDMSLKPNDAE HCCCCCCCCCCCCHH | 29.50 | 22369663 | |
190 | 2-Hydroxyisobutyrylation | TPIDMSLKPNDAESE CCCCCCCCCCCHHHH | 34.17 | - | |
190 | Acetylation | TPIDMSLKPNDAESE CCCCCCCCCCCHHHH | 34.17 | 24489116 | |
190 | Succinylation | TPIDMSLKPNDAESE CCCCCCCCCCCHHHH | 34.17 | 23954790 | |
190 | Ubiquitination | TPIDMSLKPNDAESE CCCCCCCCCCCHHHH | 34.17 | 23749301 | |
196 | Phosphorylation | LKPNDAESEKEVIDT CCCCCHHHHHHHHHH | 56.54 | 22369663 | |
198 | Succinylation | PNDAESEKEVIDTIL CCCHHHHHHHHHHHH | 67.57 | 23954790 | |
198 | Ubiquitination | PNDAESEKEVIDTIL CCCHHHHHHHHHHHH | 67.57 | 23749301 | |
203 | Phosphorylation | SEKEVIDTILALVKD HHHHHHHHHHHHHHC | 13.53 | 19795423 | |
209 | Acetylation | DTILALVKDAKNPVI HHHHHHHHCCCCCEE | 53.47 | 24489116 | |
209 | Succinylation | DTILALVKDAKNPVI HHHHHHHHCCCCCEE | 53.47 | 23954790 | |
209 | Ubiquitination | DTILALVKDAKNPVI HHHHHHHHCCCCCEE | 53.47 | 24961812 | |
212 | Acetylation | LALVKDAKNPVILAD HHHHHCCCCCEEEEE | 72.43 | 24489116 | |
212 | Ubiquitination | LALVKDAKNPVILAD HHHHHCCCCCEEEEE | 72.43 | 23749301 | |
223 | Phosphorylation | ILADACCSRHDVKAE EEEEHHCCCCCCCHH | 32.31 | 22369663 | |
228 | 2-Hydroxyisobutyrylation | CCSRHDVKAETKKLI HCCCCCCCHHHHHHH | 46.71 | - | |
228 | Acetylation | CCSRHDVKAETKKLI HCCCCCCCHHHHHHH | 46.71 | 24489116 | |
228 | Succinylation | CCSRHDVKAETKKLI HCCCCCCCHHHHHHH | 46.71 | 23954790 | |
228 | Ubiquitination | CCSRHDVKAETKKLI HCCCCCCCHHHHHHH | 46.71 | 22817900 | |
232 | Ubiquitination | HDVKAETKKLIDLTQ CCCCHHHHHHHHHHH | 36.77 | 22817900 | |
233 | 2-Hydroxyisobutyrylation | DVKAETKKLIDLTQF CCCHHHHHHHHHHHC | 59.08 | - | |
233 | Acetylation | DVKAETKKLIDLTQF CCCHHHHHHHHHHHC | 59.08 | 24489116 | |
233 | Ubiquitination | DVKAETKKLIDLTQF CCCHHHHHHHHHHHC | 59.08 | 23749301 | |
238 | Phosphorylation | TKKLIDLTQFPAFVT HHHHHHHHHCCEEEC | 25.15 | 22369663 | |
245 | Phosphorylation | TQFPAFVTPMGKGSI HHCCEEECCCCCCCC | 10.91 | 22369663 | |
249 | Acetylation | AFVTPMGKGSIDEQH EEECCCCCCCCCCCC | 43.14 | 24489116 | |
249 | Succinylation | AFVTPMGKGSIDEQH EEECCCCCCCCCCCC | 43.14 | 23954790 | |
249 | Ubiquitination | AFVTPMGKGSIDEQH EEECCCCCCCCCCCC | 43.14 | 23749301 | |
251 | Phosphorylation | VTPMGKGSIDEQHPR ECCCCCCCCCCCCCC | 30.28 | 21440633 | |
259 | Phosphorylation | IDEQHPRYGGVYVGT CCCCCCCCCEEEEEC | 23.76 | 21440633 | |
263 | Phosphorylation | HPRYGGVYVGTLSKP CCCCCEEEEECCCCH | 9.09 | 22369663 | |
266 | Phosphorylation | YGGVYVGTLSKPEVK CCEEEEECCCCHHHH | 20.15 | 22369663 | |
268 | Phosphorylation | GVYVGTLSKPEVKEA EEEEECCCCHHHHHH | 46.10 | 20377248 | |
269 | 2-Hydroxyisobutyrylation | VYVGTLSKPEVKEAV EEEECCCCHHHHHHH | 48.59 | - | |
269 | Acetylation | VYVGTLSKPEVKEAV EEEECCCCHHHHHHH | 48.59 | 24489116 | |
269 | Succinylation | VYVGTLSKPEVKEAV EEEECCCCHHHHHHH | 48.59 | 23954790 | |
269 | Ubiquitination | VYVGTLSKPEVKEAV EEEECCCCHHHHHHH | 48.59 | 23749301 | |
273 | Ubiquitination | TLSKPEVKEAVESAD CCCCHHHHHHHHHCC | 37.99 | 22817900 | |
294 | Phosphorylation | ALLSDFNTGSFSYSY HHHHCCCCCCCCCEE | 33.91 | 28889911 | |
296 | Phosphorylation | LSDFNTGSFSYSYKT HHCCCCCCCCCEEEC | 14.69 | 28889911 | |
300 | Phosphorylation | NTGSFSYSYKTKNIV CCCCCCCEEECCCEE | 20.96 | 27214570 | |
302 | Ubiquitination | GSFSYSYKTKNIVEF CCCCCEEECCCEEEE | 47.27 | 22817900 | |
304 | 2-Hydroxyisobutyrylation | FSYSYKTKNIVEFHS CCCEEECCCEEEEEC | 40.29 | - | |
304 | Acetylation | FSYSYKTKNIVEFHS CCCEEECCCEEEEEC | 40.29 | 22865919 | |
304 | Succinylation | FSYSYKTKNIVEFHS CCCEEECCCEEEEEC | 40.29 | 23954790 | |
304 | Ubiquitination | FSYSYKTKNIVEFHS CCCEEECCCEEEEEC | 40.29 | 23749301 | |
311 | Phosphorylation | KNIVEFHSDHMKIRN CCEEEEECCCCCHHC | 34.23 | 21440633 | |
315 | 2-Hydroxyisobutyrylation | EFHSDHMKIRNATFP EEECCCCCHHCCCCC | 34.78 | - | |
315 | Acetylation | EFHSDHMKIRNATFP EEECCCCCHHCCCCC | 34.78 | 24489116 | |
315 | Succinylation | EFHSDHMKIRNATFP EEECCCCCHHCCCCC | 34.78 | 23954790 | |
315 | Ubiquitination | EFHSDHMKIRNATFP EEECCCCCHHCCCCC | 34.78 | 23749301 | |
320 | Phosphorylation | HMKIRNATFPGVQMK CCCHHCCCCCCHHHH | 33.63 | 22369663 | |
327 | 2-Hydroxyisobutyrylation | TFPGVQMKFVLQKLL CCCCHHHHHHHHHHH | 18.41 | - | |
327 | Acetylation | TFPGVQMKFVLQKLL CCCCHHHHHHHHHHH | 18.41 | 24489116 | |
332 | 2-Hydroxyisobutyrylation | QMKFVLQKLLTTIAD HHHHHHHHHHHHHHH | 41.10 | - | |
332 | Acetylation | QMKFVLQKLLTTIAD HHHHHHHHHHHHHHH | 41.10 | 24489116 | |
332 | Ubiquitination | QMKFVLQKLLTTIAD HHHHHHHHHHHHHHH | 41.10 | 23749301 | |
335 | Phosphorylation | FVLQKLLTTIADAAK HHHHHHHHHHHHHHC | 26.96 | 20377248 | |
336 | Phosphorylation | VLQKLLTTIADAAKG HHHHHHHHHHHHHCC | 17.71 | 20377248 | |
342 | 2-Hydroxyisobutyrylation | TTIADAAKGYKPVAV HHHHHHHCCCCCEEE | 65.57 | - | |
342 | Acetylation | TTIADAAKGYKPVAV HHHHHHHCCCCCEEE | 65.57 | 24489116 | |
342 | Succinylation | TTIADAAKGYKPVAV HHHHHHHCCCCCEEE | 65.57 | 23954790 | |
342 | Ubiquitination | TTIADAAKGYKPVAV HHHHHHHCCCCCEEE | 65.57 | 23749301 | |
344 | Phosphorylation | IADAAKGYKPVAVPA HHHHHCCCCCEEECC | 16.06 | 21440633 | |
345 | 2-Hydroxyisobutyrylation | ADAAKGYKPVAVPAR HHHHCCCCCEEECCC | 41.50 | - | |
345 | Acetylation | ADAAKGYKPVAVPAR HHHHCCCCCEEECCC | 41.50 | 24489116 | |
345 | Succinylation | ADAAKGYKPVAVPAR HHHHCCCCCEEECCC | 41.50 | 23954790 | |
345 | Ubiquitination | ADAAKGYKPVAVPAR HHHHCCCCCEEECCC | 41.50 | 23749301 | |
353 | Phosphorylation | PVAVPARTPANAAVP CEEECCCCCCCCCCC | 28.94 | 22369663 | |
362 | Phosphorylation | ANAAVPASTPLKQEW CCCCCCCCCCCCHHH | 25.20 | 22369663 | |
363 | Phosphorylation | NAAVPASTPLKQEWM CCCCCCCCCCCHHHH | 34.44 | 22369663 | |
366 | Ubiquitination | VPASTPLKQEWMWNQ CCCCCCCCHHHHHHH | 47.58 | 17644757 | |
463 | Acetylation | TMIRWGLKPYLFVLN HHHHCCCCCEEEEEC | 27.90 | 24489116 | |
463 | Succinylation | TMIRWGLKPYLFVLN HHHHCCCCCEEEEEC | 27.90 | 23954790 | |
463 | Ubiquitination | TMIRWGLKPYLFVLN HHHHCCCCCEEEEEC | 27.90 | 23749301 | |
478 | Acetylation | NDGYTIEKLIHGPKA CCCCEEHHHHCCCHH | 49.22 | 24489116 | |
478 | Ubiquitination | NDGYTIEKLIHGPKA CCCCEEHHHHCCCHH | 49.22 | 17644757 | |
484 | Acetylation | EKLIHGPKAQYNEIQ HHHHCCCHHHCCCCC | 53.35 | 24489116 | |
484 | Ubiquitination | EKLIHGPKAQYNEIQ HHHHCCCHHHCCCCC | 53.35 | 23749301 | |
487 | Phosphorylation | IHGPKAQYNEIQGWD HCCCHHHCCCCCCCC | 21.44 | 21440633 | |
497 | Phosphorylation | IQGWDHLSLLPTFGA CCCCCEEECCCCCCC | 25.17 | 21440633 | |
501 | Phosphorylation | DHLSLLPTFGAKDYE CEEECCCCCCCCCCC | 34.37 | 22369663 | |
505 | 2-Hydroxyisobutyrylation | LLPTFGAKDYETHRV CCCCCCCCCCCCEEE | 62.31 | - | |
505 | Acetylation | LLPTFGAKDYETHRV CCCCCCCCCCCCEEE | 62.31 | 24489116 | |
505 | Ubiquitination | LLPTFGAKDYETHRV CCCCCCCCCCCCEEE | 62.31 | 23749301 | |
509 | Phosphorylation | FGAKDYETHRVATTG CCCCCCCCEEEECCC | 14.57 | 17287358 | |
514 | Phosphorylation | YETHRVATTGEWDKL CCCEEEECCCCHHHH | 32.26 | 22369663 | |
515 | Phosphorylation | ETHRVATTGEWDKLT CCEEEECCCCHHHHC | 24.30 | 29136822 | |
520 | 2-Hydroxyisobutyrylation | ATTGEWDKLTQDKSF ECCCCHHHHCCCCCC | 55.28 | - | |
520 | Acetylation | ATTGEWDKLTQDKSF ECCCCHHHHCCCCCC | 55.28 | 24489116 | |
520 | Succinylation | ATTGEWDKLTQDKSF ECCCCHHHHCCCCCC | 55.28 | 23954790 | |
520 | Ubiquitination | ATTGEWDKLTQDKSF ECCCCHHHHCCCCCC | 55.28 | 23749301 | |
522 | Phosphorylation | TGEWDKLTQDKSFND CCCHHHHCCCCCCCC | 40.23 | 28889911 | |
525 | 2-Hydroxyisobutyrylation | WDKLTQDKSFNDNSK HHHHCCCCCCCCCCC | 47.32 | - | |
525 | Acetylation | WDKLTQDKSFNDNSK HHHHCCCCCCCCCCC | 47.32 | 24489116 | |
525 | Succinylation | WDKLTQDKSFNDNSK HHHHCCCCCCCCCCC | 47.32 | 23954790 | |
525 | Ubiquitination | WDKLTQDKSFNDNSK HHHHCCCCCCCCCCC | 47.32 | 23749301 | |
526 | Phosphorylation | DKLTQDKSFNDNSKI HHHCCCCCCCCCCCE | 37.26 | 25521595 | |
531 | Phosphorylation | DKSFNDNSKIRMIEI CCCCCCCCCEEEEEE | 32.12 | 21440633 | |
532 | 2-Hydroxyisobutyrylation | KSFNDNSKIRMIEIM CCCCCCCCEEEEEEE | 40.35 | - | |
532 | Acetylation | KSFNDNSKIRMIEIM CCCCCCCCEEEEEEE | 40.35 | 24489116 | |
532 | Succinylation | KSFNDNSKIRMIEIM CCCCCCCCEEEEEEE | 40.35 | 23954790 | |
532 | Ubiquitination | KSFNDNSKIRMIEIM CCCCCCCCEEEEEEE | 40.35 | 23749301 | |
554 | Acetylation | QNLVEQAKLTAATNA HHHHHHHHHHHHHCC | 46.17 | 24489116 | |
554 | Succinylation | QNLVEQAKLTAATNA HHHHHHHHHHHHHCC | 46.17 | 23954790 | |
554 | Ubiquitination | QNLVEQAKLTAATNA HHHHHHHHHHHHHCC | 46.17 | 24961812 | |
556 | Phosphorylation | LVEQAKLTAATNAKQ HHHHHHHHHHHCCCC | 17.34 | 28889911 | |
559 | Phosphorylation | QAKLTAATNAKQ--- HHHHHHHHCCCC--- | 32.99 | 28889911 | |
562 | 2-Hydroxyisobutyrylation | LTAATNAKQ------ HHHHHCCCC------ | 59.62 | - | |
562 | Acetylation | LTAATNAKQ------ HHHHHCCCC------ | 59.62 | 24489116 | |
562 | Succinylation | LTAATNAKQ------ HHHHHCCCC------ | 59.62 | 23954790 | |
562 | Ubiquitination | LTAATNAKQ------ HHHHHCCCC------ | 59.62 | 23749301 |
Modified Location | Modified Residue | Modification | Type of Upstream Proteins | Gene Name of Upstream Proteins | UniProt AC of Upstream Proteins | Sources |
---|---|---|---|---|---|---|
Oops, there are no upstream regulatory protein records of PDC1_YEAST !! |
Modified Location | Modified Residue | Modification | Function | Reference | ||
---|---|---|---|---|---|---|
Oops, there are no descriptions of PTM sites of PDC1_YEAST !! |
* Distance = the distance between SAP position and PTM sites.
Modified Location | Modification | Variant Position (Distance <= 10) |
Residue Change | SAP | Related Disease | Reference |
---|---|---|---|---|---|---|
Oops, there are no SNP-PTM records of PDC1_YEAST !! |
Kegg Drug | ||||||
---|---|---|---|---|---|---|
DrugBank | ||||||
There are no disease associations of PTM sites. |
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Acetylation | |
Reference | PubMed |
"Identification and specificities of N-terminal acetyltransferasesfrom Saccharomyces cerevisiae."; Polevoda B., Norbeck J., Takakura H., Blomberg A., Sherman F.; EMBO J. 18:6155-6168(1999). Cited for: ACETYLATION AT SER-2. | |
"Proteome studies of Saccharomyces cerevisiae: identification andcharacterization of abundant proteins."; Garrels J.I., McLaughlin C.S., Warner J.R., Futcher B., Latter G.I.,Kobayashi R., Schwender B., Volpe T., Anderson D.S.,Mesquita-Fuentes R., Payne W.E.; Electrophoresis 18:1347-1360(1997). Cited for: ACETYLATION AT SER-2. | |
Phosphorylation | |
Reference | PubMed |
"A multidimensional chromatography technology for in-depthphosphoproteome analysis."; Albuquerque C.P., Smolka M.B., Payne S.H., Bafna V., Eng J., Zhou H.; Mol. Cell. Proteomics 7:1389-1396(2008). Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-223; THR-266; THR-320;SER-362; THR-363 AND SER-526, AND MASS SPECTROMETRY. | |
"Large-scale phosphorylation analysis of alpha-factor-arrestedSaccharomyces cerevisiae."; Li X., Gerber S.A., Rudner A.D., Beausoleil S.A., Haas W., Villen J.,Elias J.E., Gygi S.P.; J. Proteome Res. 6:1190-1197(2007). Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-223 AND THR-353, ANDMASS SPECTROMETRY. | |
"Analysis of phosphorylation sites on proteins from Saccharomycescerevisiae by electron transfer dissociation (ETD) massspectrometry."; Chi A., Huttenhower C., Geer L.Y., Coon J.J., Syka J.E.P., Bai D.L.,Shabanowitz J., Burke D.J., Troyanskaya O.G., Hunt D.F.; Proc. Natl. Acad. Sci. U.S.A. 104:2193-2198(2007). Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-509 AND THR-514, ANDMASS SPECTROMETRY. |