NLK_HUMAN - dbPTM
NLK_HUMAN - PTM Information in dbPTM
Basic Information of Protein
UniProt ID NLK_HUMAN
UniProt AC Q9UBE8
Protein Name Serine/threonine-protein kinase NLK
Gene Name NLK
Organism Homo sapiens (Human).
Sequence Length 527
Subcellular Localization Nucleus. Cytoplasm. Predominantly nuclear. A smaller fraction is cytoplasmic (By similarity)..
Protein Description Serine/threonine-protein kinase that regulates a number of transcription factors with key roles in cell fate determination. Positive effector of the non-canonical Wnt signaling pathway, acting downstream of WNT5A, MAP3K7/TAK1 and HIPK2. Activation of this pathway causes binding to and phosphorylation of the histone methyltransferase SETDB1. The NLK-SETDB1 complex subsequently interacts with PPARG, leading to methylation of PPARG target promoters at histone H3K9 and transcriptional silencing. The resulting loss of PPARG target gene transcription inhibits adipogenesis and promotes osteoblastogenesis in mesenchymal stem cells (MSCs). Negative regulator of the canonical Wnt/beta-catenin signaling pathway. Binds to and phosphorylates TCF7L2/TCF4 and LEF1, promoting the dissociation of the TCF7L2/LEF1/beta-catenin complex from DNA, as well as the ubiquitination and subsequent proteolysis of LEF1. Together these effects inhibit the transcriptional activation of canonical Wnt/beta-catenin target genes. Negative regulator of the Notch signaling pathway. Binds to and phosphorylates NOTCH1, thereby preventing the formation of a transcriptionally active ternary complex of NOTCH1, RBPJ/RBPSUH and MAML1. Negative regulator of the MYB family of transcription factors. Phosphorylation of MYB leads to its subsequent proteolysis while phosphorylation of MYBL1 and MYBL2 inhibits their interaction with the coactivator CREBBP. Other transcription factors may also be inhibited by direct phosphorylation of CREBBP itself. Acts downstream of IL6 and MAP3K7/TAK1 to phosphorylate STAT3, which is in turn required for activation of NLK by MAP3K7/TAK1. Upon IL1B stimulus, cooperates with ATF5 to activate the transactivation activity of C/EBP subfamily members. Phosphorylates ATF5 but also stabilizes ATF5 protein levels in a kinase-independent manner. [PubMed: 25512613]
Protein Sequence MSLCGARANAKMMAAYNGGTSAAAAGHHHHHHHHLPHLPPPHLHHHHHPQHHLHPGSAAAVHPVQQHTSSAAAAAAAAAAAAAMLNPGQQQPYFPSPAPGQAPGPAAAAPAQVQAAAAATVKAHHHQHSHHPQQQLDIEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDYFEEIYVVTELMQSDLHKIIVSPQPLSSDHVKVFLYQILRGLKYLHSAGILHRDIKPGNLLVNSNCVLKICDFGLARVEELDESRHMTQEVVTQYYRAPEILMGSRHYSNAIDIWSVGCIFAELLGRRILFQAQSPIQQLDLITDLLGTPSLEAMRTACEGAKAHILRGPHKQPSLPVLYTLSSQATHEAVHLLCRMLVFDPSKRISAKDALAHPYLDEGRLRYHTCMCKCCFSTSTGRVYTSDFEPVTNPKFDDTFEKNLSSVRQVKEIIHQFILEQQKGNRVPLCINPQSAAFKSFISSTVAQPSEMPPSPLVWE
Overview of Protein Modification Sites with Functional and Structural Information
Experimental Post-Translational Modification Sites

* ASA = Accessible Surface Area

Locations Modification Substrate Peptides
&
Secondary Structure
ASA (%) Reference Orthologous
Protein Cluster
274PhosphorylationPGNLLVNSNCVLKIC
CCCEEECCCCEEEEC
24.91-
294PhosphorylationRVEELDESRHMTQEV
CHHHHHHHHCCCHHH
27.4430177828
298PhosphorylationLDESRHMTQEVVTQY
HHHHHCCCHHHHHHH
18.5623401153
303PhosphorylationHMTQEVVTQYYRAPE
CCCHHHHHHHHCCHH
18.9430177828
305PhosphorylationTQEVVTQYYRAPEIL
CHHHHHHHHCCHHHH
5.8830177828
306PhosphorylationQEVVTQYYRAPEILM
HHHHHHHHCCHHHHH
7.1830177828
315PhosphorylationAPEILMGSRHYSNAI
CHHHHHCCCCCCCHH
11.2624719451
367PhosphorylationPSLEAMRTACEGAKA
CCHHHHHHHHHHHHH
23.68-
373UbiquitinationRTACEGAKAHILRGP
HHHHHHHHHHHHCCC
51.89-
385PhosphorylationRGPHKQPSLPVLYTL
CCCCCCCCCCEEEEC
42.69-
419UbiquitinationPSKRISAKDALAHPY
HHHCCCHHHHHCCCC
36.42-
434PhosphorylationLDEGRLRYHTCMCKC
CCCCCEEEEEEEEEE
13.18-
459PhosphorylationTSDFEPVTNPKFDDT
ECCCCCCCCCCCCHH
57.4224719451
462UbiquitinationFEPVTNPKFDDTFEK
CCCCCCCCCCHHHHH
64.59-
469UbiquitinationKFDDTFEKNLSSVRQ
CCCHHHHHCHHHHHH
60.02-
472PhosphorylationDTFEKNLSSVRQVKE
HHHHHCHHHHHHHHH
35.8624719451
522PhosphorylationQPSEMPPSPLVWE--
CCCCCCCCCCCCC--
25.6217344846

Upstream regulatory proteins (kinases for phosphorylation sites, E3 ubiquitin ligases of ubiquitination sites, ...)
Modified Location Modified Residue Modification Type of Upstream Proteins Gene Name of Upstream Proteins UniProt AC of Upstream Proteins Sources
298TPhosphorylationKinaseNLKQ9UBE8
GPS

Functions of PTM Sites
Modified Location Modified Residue Modification Function Reference
298TPhosphorylation

19369195
298TPhosphorylation

19369195

Disease-associated PTM Sites based on SAP

* Distance = the distance between SAP position and PTM sites.

Modified Location Modification Variant Position
(Distance <= 10)
Residue Change SAP Related Disease Reference

Oops, there are no SNP-PTM records of NLK_HUMAN !!

Protein-Protein Interaction
Interacting Protein Gene Name Interaction Type PPI Reference Domain-Domain Interactions
LEF1_HUMANLEF1physical
12556497
CTNB1_HUMANCTNNB1physical
12556497
TF7L2_HUMANTCF7L2physical
12556497
FBXW4_HUMANFBXW4physical
18765672
FBXW5_HUMANFBXW5physical
18765672
SKP2_HUMANSKP2physical
18765672
CUL1_HUMANCUL1physical
18765672
MYB_HUMANMYBphysical
16055500
HIPK2_HUMANHIPK2physical
15082531
MYB_HUMANMYBphysical
15082531
MYBA_HUMANMYBL1physical
16055500
MYBB_HUMANMYBL2physical
16055500
FOXO4_HUMANFOXO4physical
20874444
FOXO1_HUMANFOXO1physical
20874444
FOXO3_HUMANFOXO3physical
20874444
ASGR1_HUMANASGR1physical
18624398
TAB2_HUMANTAB2physical
20194509
M3K7_HUMANMAP3K7physical
20194509
NLK_HUMANNLKphysical
20194509
LEF1_HUMANLEF1physical
20194509
LEF1_HUMANLEF1physical
12901858
SMAD4_HUMANSMAD4physical
21988832
ZN363_HUMANRCHY1physical
21988832
RDHE2_HUMANSDR16C5physical
21988832
IMB1_HUMANKPNB1physical
23602568
NLK_HUMANNLKphysical
23602568
RBP2_HUMANRANBP2physical
23602568
WDCP_HUMANC2orf44physical
23602568
F222B_HUMANFAM222Bphysical
23602568
F222A_HUMANFAM222Aphysical
23602568
RN219_HUMANRNF219physical
23602568
TB182_HUMANTNKS1BP1physical
23602568
SKI_HUMANSKIphysical
23602568
RAGP1_HUMANRANGAP1physical
23602568
TLE3_HUMANTLE3physical
23602568
CEP97_HUMANCEP97physical
23602568
PASK_HUMANPASKphysical
23602568
CNOT2_HUMANCNOT2physical
23602568
CP110_HUMANCCP110physical
23602568
UBP2L_HUMANUBAP2Lphysical
23602568
TRPS1_HUMANTRPS1physical
23602568
CNO11_HUMANCNOT11physical
23602568
BACH1_HUMANBACH1physical
23602568
CNOT3_HUMANCNOT3physical
23602568
SHAN2_HUMANSHANK2physical
23602568
KPYM_HUMANPKMphysical
23602568
SMAD4_HUMANSMAD4physical
23602568
P53_HUMANTP53physical
24926618
MDM2_HUMANMDM2physical
24926618
QRIC1_HUMANQRICH1physical
25416956
KRA42_HUMANKRTAP4-2physical
25416956
KR103_HUMANKRTAP10-3physical
25416956
KRA56_HUMANKRTAP5-6physical
25416956
CBP_HUMANCREBBPphysical
14720327

Drug and Disease Associations
Kegg Disease
There are no disease associations of PTM sites.
OMIM Disease
There are no disease associations of PTM sites.
Kegg Drug
There are no disease associations of PTM sites.
DrugBank
There are no disease associations of PTM sites.
Regulatory Network of NLK_HUMAN

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Related Literatures of Post-Translational Modification
Phosphorylation
ReferencePubMed
"Large-scale proteomics analysis of the human kinome.";
Oppermann F.S., Gnad F., Olsen J.V., Hornberger R., Greff Z., Keri G.,Mann M., Daub H.;
Mol. Cell. Proteomics 8:1751-1764(2009).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-298 AND SER-522, ANDMASS SPECTROMETRY.
"Quantitative phosphoproteomic analysis of T cell receptor signalingreveals system-wide modulation of protein-protein interactions.";
Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K.,Rodionov V., Han D.K.;
Sci. Signal. 2:RA46-RA46(2009).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-298, AND MASSSPECTROMETRY.

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