UniProt ID | LCK_HUMAN | |
---|---|---|
UniProt AC | P06239 | |
Protein Name | Tyrosine-protein kinase Lck | |
Gene Name | LCK | |
Organism | Homo sapiens (Human). | |
Sequence Length | 509 | |
Subcellular Localization |
Cytoplasm . Cell membrane Lipid-anchor Cytoplasmic side . Present in lipid rafts in an inactive form. |
|
Protein Description | Non-receptor tyrosine-protein kinase that plays an essential role in the selection and maturation of developing T-cells in the thymus and in the function of mature T-cells. Plays a key role in T-cell antigen receptor (TCR)-linked signal transduction pathways. Constitutively associated with the cytoplasmic portions of the CD4 and CD8 surface receptors. Association of the TCR with a peptide antigen-bound MHC complex facilitates the interaction of CD4 and CD8 with MHC class II and class I molecules, respectively, thereby recruiting the associated LCK protein to the vicinity of the TCR/CD3 complex. LCK then phosphorylates tyrosine residues within the immunoreceptor tyrosine-based activation motifs (ITAM) of the cytoplasmic tails of the TCR-gamma chains and CD3 subunits, initiating the TCR/CD3 signaling pathway. Once stimulated, the TCR recruits the tyrosine kinase ZAP70, that becomes phosphorylated and activated by LCK. Following this, a large number of signaling molecules are recruited, ultimately leading to lymphokine production. LCK also contributes to signaling by other receptor molecules. Associates directly with the cytoplasmic tail of CD2, which leads to hyperphosphorylation and activation of LCK. Also plays a role in the IL2 receptor-linked signaling pathway that controls the T-cell proliferative response. Binding of IL2 to its receptor results in increased activity of LCK. Is expressed at all stages of thymocyte development and is required for the regulation of maturation events that are governed by both pre-TCR and mature alpha beta TCR. Phosphorylates other substrates including RUNX3, PTK2B/PYK2, the microtubule-associated protein MAPT, RHOH or TYROBP. Interacts with FYB2. [PubMed: 27335501] | |
Protein Sequence | MGCGCSSHPEDDWMENIDVCENCHYPIVPLDGKGTLLIRNGSEVRDPLVTYEGSNPPASPLQDNLVIALHSYEPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTTGQEGFIPFNFVAKANSLEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGLHELVRHYTNASDGLCTRLSRPCQTQKPQKPWWEDEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTATEGQYQPQP | |
Overview of Protein Modification Sites with Functional and Structural Information | ||
* ASA = Accessible Surface Area
Locations | Modification | Substrate Peptides & Secondary Structure |
ASA (%) | Reference | Orthologous Protein Cluster |
---|---|---|---|---|---|
2 | N-myristoyl glycine | ------MGCGCSSHP ------CCCCCCCCC | 19.27 | - | |
2 | Myristoylation | ------MGCGCSSHP ------CCCCCCCCC | 19.27 | - | |
3 | S-palmitoylation | -----MGCGCSSHPE -----CCCCCCCCCC | 4.85 | - | |
5 | S-palmitoylation | ---MGCGCSSHPEDD ---CCCCCCCCCCCC | 4.36 | 8035816 | |
25 | Phosphorylation | DVCENCHYPIVPLDG CEECCCCCCEEECCC | 9.24 | 26074081 | |
35 | Phosphorylation | VPLDGKGTLLIRNGS EECCCCCEEEEECCC | 23.13 | 26074081 | |
42 | Phosphorylation | TLLIRNGSEVRDPLV EEEEECCCEECCCEE | 36.15 | 20164059 | |
42 (in isoform 3) | Phosphorylation | - | 36.15 | 21406692 | |
50 | Phosphorylation | EVRDPLVTYEGSNPP EECCCEEEECCCCCC | 24.44 | 26074081 | |
50 (in isoform 3) | Phosphorylation | - | 24.44 | 21406692 | |
51 | Phosphorylation | VRDPLVTYEGSNPPA ECCCEEEECCCCCCC | 15.71 | 26074081 | |
51 (in isoform 3) | Phosphorylation | - | 15.71 | 27642862 | |
54 | Phosphorylation | PLVTYEGSNPPASPL CEEEECCCCCCCCCC | 33.93 | 28464451 | |
59 | Phosphorylation | EGSNPPASPLQDNLV CCCCCCCCCCCCCEE | 31.73 | 28787133 | |
59 (in isoform 3) | Phosphorylation | - | 31.73 | 27642862 | |
71 | Phosphorylation | NLVIALHSYEPSHDG CEEEEEEEECCCCCC | 31.85 | 28464451 | |
72 | Phosphorylation | LVIALHSYEPSHDGD EEEEEEEECCCCCCC | 22.55 | 28464451 | |
75 | Phosphorylation | ALHSYEPSHDGDLGF EEEEECCCCCCCCCC | 23.44 | 26074081 | |
84 | Ubiquitination | DGDLGFEKGEQLRIL CCCCCCCCCCEEEEE | 66.54 | - | |
94 | Phosphorylation | QLRILEQSGEWWKAQ EEEEEEECCCCEEEE | 29.33 | 28464451 | |
99 | Ubiquitination | EQSGEWWKAQSLTTG EECCCCEEEEECCCC | 37.31 | - | |
99 (in isoform 3) | Ubiquitination | - | 37.31 | - | |
102 | Phosphorylation | GEWWKAQSLTTGQEG CCCEEEEECCCCCCC | 32.32 | 26074081 | |
104 | Phosphorylation | WWKAQSLTTGQEGFI CEEEEECCCCCCCEE | 33.84 | 26074081 | |
105 | Phosphorylation | WKAQSLTTGQEGFIP EEEEECCCCCCCEEC | 42.01 | 26074081 | |
118 | Ubiquitination | IPFNFVAKANSLEPE ECHHHEEECCCCCCC | 42.68 | - | |
121 | Phosphorylation | NFVAKANSLEPEPWF HHEEECCCCCCCCCH | 38.68 | 28464451 | |
130 | Ubiquitination | EPEPWFFKNLSRKDA CCCCCHHHCCCHHHH | 47.72 | - | |
130 (in isoform 3) | Ubiquitination | - | 47.72 | - | |
133 | Phosphorylation | PWFFKNLSRKDAERQ CCHHHCCCHHHHHHH | 46.83 | 23532336 | |
147 | Phosphorylation | QLLAPGNTHGSFLIR HHCCCCCCCCCEEEE | 33.26 | 28464451 | |
150 | Phosphorylation | APGNTHGSFLIRESE CCCCCCCCEEEEECC | 14.85 | 28464451 | |
156 | Phosphorylation | GSFLIRESESTAGSF CCEEEEECCCCCCEE | 27.31 | 28122231 | |
158 | Phosphorylation | FLIRESESTAGSFSL EEEEECCCCCCEEEE | 32.60 | 30576142 | |
159 | Phosphorylation | LIRESESTAGSFSLS EEEECCCCCCEEEEE | 30.87 | 28464451 | |
162 | Phosphorylation | ESESTAGSFSLSVRD ECCCCCCEEEEEEEE | 14.81 | 21082442 | |
164 | Phosphorylation | ESTAGSFSLSVRDFD CCCCCEEEEEEEEEC | 22.79 | 30576142 | |
166 | Phosphorylation | TAGSFSLSVRDFDQN CCCEEEEEEEEECCC | 17.57 | 30108239 | |
179 | Acetylation | QNQGEVVKHYKIRNL CCCCEEEEEEEEEEC | 46.52 | 23749302 | |
179 | Ubiquitination | QNQGEVVKHYKIRNL CCCCEEEEEEEEEEC | 46.52 | 19608861 | |
179 (in isoform 3) | Ubiquitination | - | 46.52 | - | |
181 | Phosphorylation | QGEVVKHYKIRNLDN CCEEEEEEEEEECCC | 11.46 | - | |
182 | Ubiquitination | GEVVKHYKIRNLDNG CEEEEEEEEEECCCC | 34.60 | - | |
182 (in isoform 3) | Ubiquitination | - | 34.60 | - | |
192 | Phosphorylation | NLDNGGFYISPRITF ECCCCCEEECCCEEC | 12.08 | 19664994 | |
192 (in isoform 3) | Phosphorylation | - | 12.08 | 27642862 | |
194 | Phosphorylation | DNGGFYISPRITFPG CCCCEEECCCEECCC | 9.21 | 21082442 | |
198 | Phosphorylation | FYISPRITFPGLHEL EEECCCEECCCHHHH | 25.67 | 26546556 | |
209 | Phosphorylation | LHELVRHYTNASDGL HHHHHHHHCCCCCCC | 7.36 | 28796482 | |
210 | Phosphorylation | HELVRHYTNASDGLC HHHHHHHCCCCCCCC | 20.41 | 30108239 | |
213 | Phosphorylation | VRHYTNASDGLCTRL HHHHCCCCCCCCHHC | 33.99 | 17192257 | |
218 | Phosphorylation | NASDGLCTRLSRPCQ CCCCCCCHHCCCCCC | 39.42 | 28111955 | |
228 | Ubiquitination | SRPCQTQKPQKPWWE CCCCCCCCCCCCCCC | 53.45 | - | |
231 | Ubiquitination | CQTQKPQKPWWEDEW CCCCCCCCCCCCCCC | 51.65 | - | |
246 | Ubiquitination | EVPRETLKLVERLGA CCCHHHHHHHHHHCC | 58.88 | - | |
246 (in isoform 3) | Ubiquitination | - | 58.88 | - | |
246 | Acetylation | EVPRETLKLVERLGA CCCHHHHHHHHHHCC | 58.88 | 25953088 | |
263 | Phosphorylation | FGEVWMGYYNGHTKV CCCEEEEEECCCCEE | 4.25 | 25147952 | |
264 | Phosphorylation | GEVWMGYYNGHTKVA CCEEEEEECCCCEEE | 14.67 | 25147952 | |
268 | Phosphorylation | MGYYNGHTKVAVKSL EEEECCCCEEEEEHH | 28.72 | 28122231 | |
269 | Ubiquitination | GYYNGHTKVAVKSLK EEECCCCEEEEEHHH | 23.63 | - | |
269 (in isoform 3) | Ubiquitination | - | 23.63 | - | |
273 | Ubiquitination | GHTKVAVKSLKQGSM CCCEEEEEHHHCCCC | 40.09 | - | |
273 (in isoform 3) | Ubiquitination | - | 40.09 | - | |
273 | Acetylation | GHTKVAVKSLKQGSM CCCEEEEEHHHCCCC | 40.09 | 25953088 | |
274 | Phosphorylation | HTKVAVKSLKQGSMS CCEEEEEHHHCCCCC | 33.91 | 24719451 | |
276 | Ubiquitination | KVAVKSLKQGSMSPD EEEEEHHHCCCCCHH | 60.75 | - | |
276 (in isoform 3) | Ubiquitination | - | 60.75 | - | |
281 | Phosphorylation | SLKQGSMSPDAFLAE HHHCCCCCHHHHHHH | 22.71 | - | |
293 | Ubiquitination | LAEANLMKQLQHQRL HHHHHHHHHHHHHHH | 51.53 | - | |
293 (in isoform 3) | Ubiquitination | - | 51.53 | - | |
313 | Phosphorylation | VVTQEPIYIITEYME EECCCCEEEEEEECC | 9.29 | 29438985 | |
318 | Phosphorylation | PIYIITEYMENGSLV CEEEEEEECCCCCEE | 10.90 | 29438985 | |
318 (in isoform 3) | Phosphorylation | - | 10.90 | 26657352 | |
323 | Phosphorylation | TEYMENGSLVDFLKT EEECCCCCEEEEHHC | 36.48 | 29438985 | |
330 | Phosphorylation | SLVDFLKTPSGIKLT CEEEEHHCCCCCEEH | 25.49 | 29438985 | |
335 | Ubiquitination | LKTPSGIKLTINKLL HHCCCCCEEHHHHHH | 43.00 | - | |
335 | Acetylation | LKTPSGIKLTINKLL HHCCCCCEEHHHHHH | 43.00 | 25953088 | |
365 (in isoform 3) | Ubiquitination | - | 3.96 | - | |
373 | Phosphorylation | RAANILVSDTLSCKI HHHCEEEECCCCCEE | 22.79 | 28122231 | |
375 | Phosphorylation | ANILVSDTLSCKIAD HCEEEECCCCCEEHH | 17.05 | 28122231 | |
377 | Phosphorylation | ILVSDTLSCKIADFG EEEECCCCCEEHHHH | 18.56 | 26546556 | |
379 | Ubiquitination | VSDTLSCKIADFGLA EECCCCCEEHHHHHH | 37.24 | - | |
393 | Phosphorylation | ARLIEDNEYTAREGA HHHHCCCCCCCCCCC | 57.49 | 17016520 | |
394 | Phosphorylation | RLIEDNEYTAREGAK HHHCCCCCCCCCCCC | 16.38 | 19664994 | |
394 | Dephosphorylation | RLIEDNEYTAREGAK HHHCCCCCCCCCCCC | 16.38 | 12589038 | |
395 | Phosphorylation | LIEDNEYTAREGAKF HHCCCCCCCCCCCCC | 17.04 | 29255136 | |
401 | Ubiquitination | YTAREGAKFPIKWTA CCCCCCCCCCCEECC | 63.63 | - | |
401 | Acetylation | YTAREGAKFPIKWTA CCCCCCCCCCCEECC | 63.63 | 25953088 | |
405 | Ubiquitination | EGAKFPIKWTAPEAI CCCCCCCEECCCCCC | 38.44 | - | |
409 (in isoform 3) | Ubiquitination | - | 24.95 | - | |
414 | Phosphorylation | TAPEAINYGTFTIKS CCCCCCCCCCEEEEC | 16.07 | 25147952 | |
416 | Phosphorylation | PEAINYGTFTIKSDV CCCCCCCCEEEECHH | 13.77 | 28122231 | |
418 | Phosphorylation | AINYGTFTIKSDVWS CCCCCCEEEECHHHH | 27.60 | 28122231 | |
431 (in isoform 3) | Ubiquitination | - | 21.88 | - | |
435 (in isoform 3) | Ubiquitination | - | 25.03 | - | |
441 | Phosphorylation | VTHGRIPYPGMTNPE HHCCCCCCCCCCCHH | 15.28 | 27174698 | |
445 | Phosphorylation | RIPYPGMTNPEVIQN CCCCCCCCCHHHHHH | 54.24 | 27174698 | |
457 | Phosphorylation | IQNLERGYRMVRPDN HHHHHHHCCCCCCCC | 11.19 | 27174698 | |
470 | Phosphorylation | DNCPEELYQLMRLCW CCCCHHHHHHHHHHH | 11.68 | 28796482 | |
478 | Ubiquitination | QLMRLCWKERPEDRP HHHHHHHHCCCCCCC | 42.73 | - | |
489 | Phosphorylation | EDRPTFDYLRSVLED CCCCCHHHHHHHHHH | 10.38 | - | |
492 | Phosphorylation | PTFDYLRSVLEDFFT CCHHHHHHHHHHHHH | 28.58 | 28796482 | |
499 | Phosphorylation | SVLEDFFTATEGQYQ HHHHHHHHHCCCCCC | 32.44 | 28796482 | |
500 (in isoform 3) | Phosphorylation | - | 9.86 | 27642862 | |
501 | Phosphorylation | LEDFFTATEGQYQPQ HHHHHHHCCCCCCCC | 37.28 | 21082442 | |
505 | Phosphorylation | FTATEGQYQPQP--- HHHCCCCCCCCC--- | 32.77 | 22322096 | |
505 | Dephosphorylation | FTATEGQYQPQP--- HHHCCCCCCCCC--- | 32.77 | 8663450 | |
535 (in isoform 3) | Phosphorylation | - | 27642862 |
Modified Location | Modified Residue | Modification | Type of Upstream Proteins | Gene Name of Upstream Proteins | UniProt AC of Upstream Proteins | Sources |
---|---|---|---|---|---|---|
42 | S | Phosphorylation | Kinase | PRKACA | P17612 | GPS |
42 | S | Phosphorylation | Kinase | PRKCA | P17252 | GPS |
42 | S | Phosphorylation | Kinase | MAPK1 | P28482 | GPS |
42 | S | Phosphorylation | Kinase | MAPK3 | P27361 | GPS |
59 | S | Phosphorylation | Kinase | MAPK1 | P28482 | GPS |
59 | S | Phosphorylation | Kinase | MAPK3 | P27361 | GPS |
59 | S | Phosphorylation | Kinase | MAPK-FAMILY | - | GPS |
192 | Y | Phosphorylation | Kinase | SYK | P43405 | GPS |
394 | Y | Phosphorylation | Kinase | LCK | P06239 | PSP |
394 | Y | Phosphorylation | Kinase | AXL | P30530 | PSP |
394 | Y | Phosphorylation | Kinase | YOPH | P08538 | PSP |
505 | Y | Phosphorylation | Kinase | CSK | P41240 | Uniprot |
505 | Y | Phosphorylation | Kinase | LCK | P06239 | PSP |
- | K | Ubiquitination | E3 ubiquitin ligase | CBL | P22681 | PMID:11904433 |
- | K | Ubiquitination | E3 ubiquitin ligase | SMURF1 | Q9HCE7 | PMID:20804422 |
Modified Location | Modified Residue | Modification | Function | Reference | ||
---|---|---|---|---|---|---|
Oops, there are no descriptions of PTM sites of LCK_HUMAN !! |
* Distance = the distance between SAP position and PTM sites.
Modified Location | Modification | Variant Position (Distance <= 10) |
Residue Change | SAP | Related Disease | Reference |
---|---|---|---|---|---|---|
Oops, there are no SNP-PTM records of LCK_HUMAN !! |
Kegg Disease | ||||||
---|---|---|---|---|---|---|
H00093 | Combined immunodeficiencies (CIDs), including the following nine diseases: X-linked hyper IgM syndro | |||||
OMIM Disease | ||||||
Note=A chromosomal aberration involving LCK is found in leukemias. Translocation t(1 | ||||||
7)(p34 | ||||||
q34) with TCRB. | ||||||
615758 | ||||||
Kegg Drug | ||||||
There are no disease associations of PTM sites. | ||||||
DrugBank | ||||||
There are no disease associations of PTM sites. |
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Acetylation | |
Reference | PubMed |
"Lysine acetylation targets protein complexes and co-regulates majorcellular functions."; Choudhary C., Kumar C., Gnad F., Nielsen M.L., Rehman M., Walther T.,Olsen J.V., Mann M.; Science 325:834-840(2009). Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT LYS-179, AND MASS SPECTROMETRY. | |
Phosphorylation | |
Reference | PubMed |
"Quantitative phosphoproteomic analysis of T cell receptor signalingreveals system-wide modulation of protein-protein interactions."; Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K.,Rodionov V., Han D.K.; Sci. Signal. 2:RA46-RA46(2009). Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-102; THR-159; SER-162;TYR-192; SER-194 AND TYR-505, AND MASS SPECTROMETRY. | |
"Proteomics analysis of protein kinases by target class-selectiveprefractionation and tandem mass spectrometry."; Wissing J., Jaensch L., Nimtz M., Dieterich G., Hornberger R.,Keri G., Wehland J., Daub H.; Mol. Cell. Proteomics 6:537-547(2007). Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-162; TYR-192; SER-213;TYR-394; THR-501 AND TYR-505, AND MASS SPECTROMETRY. | |
"Large-scale proteomics analysis of the human kinome."; Oppermann F.S., Gnad F., Olsen J.V., Hornberger R., Greff Z., Keri G.,Mann M., Daub H.; Mol. Cell. Proteomics 8:1751-1764(2009). Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-505, AND MASSSPECTROMETRY. | |
"Kinase-selective enrichment enables quantitative phosphoproteomics ofthe kinome across the cell cycle."; Daub H., Olsen J.V., Bairlein M., Gnad F., Oppermann F.S., Korner R.,Greff Z., Keri G., Stemmann O., Mann M.; Mol. Cell 31:438-448(2008). Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-505, AND MASSSPECTROMETRY. | |
"Global survey of phosphotyrosine signaling identifies oncogenickinases in lung cancer."; Rikova K., Guo A., Zeng Q., Possemato A., Yu J., Haack H., Nardone J.,Lee K., Reeves C., Li Y., Hu Y., Tan Z., Stokes M., Sullivan L.,Mitchell J., Wetzel R., Macneill J., Ren J.M., Yuan J.,Bakalarski C.E., Villen J., Kornhauser J.M., Smith B., Li D., Zhou X.,Gygi S.P., Gu T.-L., Polakiewicz R.D., Rush J., Comb M.J.; Cell 131:1190-1203(2007). Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-192 AND TYR-505, ANDMASS SPECTROMETRY. | |
"Immunoaffinity profiling of tyrosine phosphorylation in cancercells."; Rush J., Moritz A., Lee K.A., Guo A., Goss V.L., Spek E.J., Zhang H.,Zha X.-M., Polakiewicz R.D., Comb M.J.; Nat. Biotechnol. 23:94-101(2005). Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-394 AND TYR-505, ANDMASS SPECTROMETRY. | |
"Detection of a physical and functional interaction between Csk andLck which involves the SH2 domain of Csk and is mediated byautophosphorylation of Lck on tyrosine 394."; Bougeret C., Delaunay T., Romero F., Jullien P., Sabe H., Hanafusa H.,Benarous R., Fischer S.; J. Biol. Chem. 271:7465-7472(1996). Cited for: PHOSPHORYLATION AT TYR-505 BY CSK, AND AUTOPHOSPHORYLATION. | |
"The human p50csk tyrosine kinase phosphorylates p56lck at Tyr-505 anddown regulates its catalytic activity."; Bergman M., Mustelin T., Oetken C., Partanen J., Flint N.A.,Amrein K.E., Autero M., Burn P., Alitalo K.; EMBO J. 11:2919-2924(1992). Cited for: PHOSPHORYLATION AT TYR-505. | |
"Oncogenic activation of the Lck protein accompanies translocation ofthe LCK gene in the human HSB2 T-cell leukemia."; Wright D.D., Sefton B.M., Kamps M.P.; Mol. Cell. Biol. 14:2429-2437(1994). Cited for: NUCLEOTIDE SEQUENCE [MRNA], VARIANTS LEU-28; GLN-LYS-PRO-232 INS;VAL-353 AND LEU-447, AND PHOSPHORYLATION AT TYR-394 AND TYR-505. |