LCK_HUMAN - dbPTM
LCK_HUMAN - PTM Information in dbPTM
Basic Information of Protein
UniProt ID LCK_HUMAN
UniProt AC P06239
Protein Name Tyrosine-protein kinase Lck
Gene Name LCK
Organism Homo sapiens (Human).
Sequence Length 509
Subcellular Localization Cytoplasm . Cell membrane
Lipid-anchor
Cytoplasmic side . Present in lipid rafts in an inactive form.
Protein Description Non-receptor tyrosine-protein kinase that plays an essential role in the selection and maturation of developing T-cells in the thymus and in the function of mature T-cells. Plays a key role in T-cell antigen receptor (TCR)-linked signal transduction pathways. Constitutively associated with the cytoplasmic portions of the CD4 and CD8 surface receptors. Association of the TCR with a peptide antigen-bound MHC complex facilitates the interaction of CD4 and CD8 with MHC class II and class I molecules, respectively, thereby recruiting the associated LCK protein to the vicinity of the TCR/CD3 complex. LCK then phosphorylates tyrosine residues within the immunoreceptor tyrosine-based activation motifs (ITAM) of the cytoplasmic tails of the TCR-gamma chains and CD3 subunits, initiating the TCR/CD3 signaling pathway. Once stimulated, the TCR recruits the tyrosine kinase ZAP70, that becomes phosphorylated and activated by LCK. Following this, a large number of signaling molecules are recruited, ultimately leading to lymphokine production. LCK also contributes to signaling by other receptor molecules. Associates directly with the cytoplasmic tail of CD2, which leads to hyperphosphorylation and activation of LCK. Also plays a role in the IL2 receptor-linked signaling pathway that controls the T-cell proliferative response. Binding of IL2 to its receptor results in increased activity of LCK. Is expressed at all stages of thymocyte development and is required for the regulation of maturation events that are governed by both pre-TCR and mature alpha beta TCR. Phosphorylates other substrates including RUNX3, PTK2B/PYK2, the microtubule-associated protein MAPT, RHOH or TYROBP. Interacts with FYB2. [PubMed: 27335501]
Protein Sequence MGCGCSSHPEDDWMENIDVCENCHYPIVPLDGKGTLLIRNGSEVRDPLVTYEGSNPPASPLQDNLVIALHSYEPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTTGQEGFIPFNFVAKANSLEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGLHELVRHYTNASDGLCTRLSRPCQTQKPQKPWWEDEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTATEGQYQPQP
Overview of Protein Modification Sites with Functional and Structural Information
Experimental Post-Translational Modification Sites

* ASA = Accessible Surface Area

Locations Modification Substrate Peptides
&
Secondary Structure
ASA (%) Reference Orthologous
Protein Cluster
2N-myristoyl glycine------MGCGCSSHP
------CCCCCCCCC
19.27-
2Myristoylation------MGCGCSSHP
------CCCCCCCCC
19.27-
3S-palmitoylation-----MGCGCSSHPE
-----CCCCCCCCCC
4.85-
5S-palmitoylation---MGCGCSSHPEDD
---CCCCCCCCCCCC
4.368035816
25PhosphorylationDVCENCHYPIVPLDG
CEECCCCCCEEECCC
9.2426074081
35PhosphorylationVPLDGKGTLLIRNGS
EECCCCCEEEEECCC
23.1326074081
42PhosphorylationTLLIRNGSEVRDPLV
EEEEECCCEECCCEE
36.1520164059
42 (in isoform 3)Phosphorylation-36.1521406692
50PhosphorylationEVRDPLVTYEGSNPP
EECCCEEEECCCCCC
24.4426074081
50 (in isoform 3)Phosphorylation-24.4421406692
51PhosphorylationVRDPLVTYEGSNPPA
ECCCEEEECCCCCCC
15.7126074081
51 (in isoform 3)Phosphorylation-15.7127642862
54PhosphorylationPLVTYEGSNPPASPL
CEEEECCCCCCCCCC
33.9328464451
59PhosphorylationEGSNPPASPLQDNLV
CCCCCCCCCCCCCEE
31.7328787133
59 (in isoform 3)Phosphorylation-31.7327642862
71PhosphorylationNLVIALHSYEPSHDG
CEEEEEEEECCCCCC
31.8528464451
72PhosphorylationLVIALHSYEPSHDGD
EEEEEEEECCCCCCC
22.5528464451
75PhosphorylationALHSYEPSHDGDLGF
EEEEECCCCCCCCCC
23.4426074081
84UbiquitinationDGDLGFEKGEQLRIL
CCCCCCCCCCEEEEE
66.54-
94PhosphorylationQLRILEQSGEWWKAQ
EEEEEEECCCCEEEE
29.3328464451
99UbiquitinationEQSGEWWKAQSLTTG
EECCCCEEEEECCCC
37.31-
99 (in isoform 3)Ubiquitination-37.31-
102PhosphorylationGEWWKAQSLTTGQEG
CCCEEEEECCCCCCC
32.3226074081
104PhosphorylationWWKAQSLTTGQEGFI
CEEEEECCCCCCCEE
33.8426074081
105PhosphorylationWKAQSLTTGQEGFIP
EEEEECCCCCCCEEC
42.0126074081
118UbiquitinationIPFNFVAKANSLEPE
ECHHHEEECCCCCCC
42.68-
121PhosphorylationNFVAKANSLEPEPWF
HHEEECCCCCCCCCH
38.6828464451
130UbiquitinationEPEPWFFKNLSRKDA
CCCCCHHHCCCHHHH
47.72-
130 (in isoform 3)Ubiquitination-47.72-
133PhosphorylationPWFFKNLSRKDAERQ
CCHHHCCCHHHHHHH
46.8323532336
147PhosphorylationQLLAPGNTHGSFLIR
HHCCCCCCCCCEEEE
33.2628464451
150PhosphorylationAPGNTHGSFLIRESE
CCCCCCCCEEEEECC
14.8528464451
156PhosphorylationGSFLIRESESTAGSF
CCEEEEECCCCCCEE
27.3128122231
158PhosphorylationFLIRESESTAGSFSL
EEEEECCCCCCEEEE
32.6030576142
159PhosphorylationLIRESESTAGSFSLS
EEEECCCCCCEEEEE
30.8728464451
162PhosphorylationESESTAGSFSLSVRD
ECCCCCCEEEEEEEE
14.8121082442
164PhosphorylationESTAGSFSLSVRDFD
CCCCCEEEEEEEEEC
22.7930576142
166PhosphorylationTAGSFSLSVRDFDQN
CCCEEEEEEEEECCC
17.5730108239
179AcetylationQNQGEVVKHYKIRNL
CCCCEEEEEEEEEEC
46.5223749302
179UbiquitinationQNQGEVVKHYKIRNL
CCCCEEEEEEEEEEC
46.5219608861
179 (in isoform 3)Ubiquitination-46.52-
181PhosphorylationQGEVVKHYKIRNLDN
CCEEEEEEEEEECCC
11.46-
182UbiquitinationGEVVKHYKIRNLDNG
CEEEEEEEEEECCCC
34.60-
182 (in isoform 3)Ubiquitination-34.60-
192PhosphorylationNLDNGGFYISPRITF
ECCCCCEEECCCEEC
12.0819664994
192 (in isoform 3)Phosphorylation-12.0827642862
194PhosphorylationDNGGFYISPRITFPG
CCCCEEECCCEECCC
9.2121082442
198PhosphorylationFYISPRITFPGLHEL
EEECCCEECCCHHHH
25.6726546556
209PhosphorylationLHELVRHYTNASDGL
HHHHHHHHCCCCCCC
7.3628796482
210PhosphorylationHELVRHYTNASDGLC
HHHHHHHCCCCCCCC
20.4130108239
213PhosphorylationVRHYTNASDGLCTRL
HHHHCCCCCCCCHHC
33.9917192257
218PhosphorylationNASDGLCTRLSRPCQ
CCCCCCCHHCCCCCC
39.4228111955
228UbiquitinationSRPCQTQKPQKPWWE
CCCCCCCCCCCCCCC
53.45-
231UbiquitinationCQTQKPQKPWWEDEW
CCCCCCCCCCCCCCC
51.65-
246UbiquitinationEVPRETLKLVERLGA
CCCHHHHHHHHHHCC
58.88-
246 (in isoform 3)Ubiquitination-58.88-
246AcetylationEVPRETLKLVERLGA
CCCHHHHHHHHHHCC
58.8825953088
263PhosphorylationFGEVWMGYYNGHTKV
CCCEEEEEECCCCEE
4.2525147952
264PhosphorylationGEVWMGYYNGHTKVA
CCEEEEEECCCCEEE
14.6725147952
268PhosphorylationMGYYNGHTKVAVKSL
EEEECCCCEEEEEHH
28.7228122231
269UbiquitinationGYYNGHTKVAVKSLK
EEECCCCEEEEEHHH
23.63-
269 (in isoform 3)Ubiquitination-23.63-
273UbiquitinationGHTKVAVKSLKQGSM
CCCEEEEEHHHCCCC
40.09-
273 (in isoform 3)Ubiquitination-40.09-
273AcetylationGHTKVAVKSLKQGSM
CCCEEEEEHHHCCCC
40.0925953088
274PhosphorylationHTKVAVKSLKQGSMS
CCEEEEEHHHCCCCC
33.9124719451
276UbiquitinationKVAVKSLKQGSMSPD
EEEEEHHHCCCCCHH
60.75-
276 (in isoform 3)Ubiquitination-60.75-
281PhosphorylationSLKQGSMSPDAFLAE
HHHCCCCCHHHHHHH
22.71-
293UbiquitinationLAEANLMKQLQHQRL
HHHHHHHHHHHHHHH
51.53-
293 (in isoform 3)Ubiquitination-51.53-
313PhosphorylationVVTQEPIYIITEYME
EECCCCEEEEEEECC
9.2929438985
318PhosphorylationPIYIITEYMENGSLV
CEEEEEEECCCCCEE
10.9029438985
318 (in isoform 3)Phosphorylation-10.9026657352
323PhosphorylationTEYMENGSLVDFLKT
EEECCCCCEEEEHHC
36.4829438985
330PhosphorylationSLVDFLKTPSGIKLT
CEEEEHHCCCCCEEH
25.4929438985
335UbiquitinationLKTPSGIKLTINKLL
HHCCCCCEEHHHHHH
43.00-
335AcetylationLKTPSGIKLTINKLL
HHCCCCCEEHHHHHH
43.0025953088
365 (in isoform 3)Ubiquitination-3.96-
373PhosphorylationRAANILVSDTLSCKI
HHHCEEEECCCCCEE
22.7928122231
375PhosphorylationANILVSDTLSCKIAD
HCEEEECCCCCEEHH
17.0528122231
377PhosphorylationILVSDTLSCKIADFG
EEEECCCCCEEHHHH
18.5626546556
379UbiquitinationVSDTLSCKIADFGLA
EECCCCCEEHHHHHH
37.24-
393PhosphorylationARLIEDNEYTAREGA
HHHHCCCCCCCCCCC
57.4917016520
394PhosphorylationRLIEDNEYTAREGAK
HHHCCCCCCCCCCCC
16.3819664994
394DephosphorylationRLIEDNEYTAREGAK
HHHCCCCCCCCCCCC
16.3812589038
395PhosphorylationLIEDNEYTAREGAKF
HHCCCCCCCCCCCCC
17.0429255136
401UbiquitinationYTAREGAKFPIKWTA
CCCCCCCCCCCEECC
63.63-
401AcetylationYTAREGAKFPIKWTA
CCCCCCCCCCCEECC
63.6325953088
405UbiquitinationEGAKFPIKWTAPEAI
CCCCCCCEECCCCCC
38.44-
409 (in isoform 3)Ubiquitination-24.95-
414PhosphorylationTAPEAINYGTFTIKS
CCCCCCCCCCEEEEC
16.0725147952
416PhosphorylationPEAINYGTFTIKSDV
CCCCCCCCEEEECHH
13.7728122231
418PhosphorylationAINYGTFTIKSDVWS
CCCCCCEEEECHHHH
27.6028122231
431 (in isoform 3)Ubiquitination-21.88-
435 (in isoform 3)Ubiquitination-25.03-
441PhosphorylationVTHGRIPYPGMTNPE
HHCCCCCCCCCCCHH
15.2827174698
445PhosphorylationRIPYPGMTNPEVIQN
CCCCCCCCCHHHHHH
54.2427174698
457PhosphorylationIQNLERGYRMVRPDN
HHHHHHHCCCCCCCC
11.1927174698
470PhosphorylationDNCPEELYQLMRLCW
CCCCHHHHHHHHHHH
11.6828796482
478UbiquitinationQLMRLCWKERPEDRP
HHHHHHHHCCCCCCC
42.73-
489PhosphorylationEDRPTFDYLRSVLED
CCCCCHHHHHHHHHH
10.38-
492PhosphorylationPTFDYLRSVLEDFFT
CCHHHHHHHHHHHHH
28.5828796482
499PhosphorylationSVLEDFFTATEGQYQ
HHHHHHHHHCCCCCC
32.4428796482
500 (in isoform 3)Phosphorylation-9.8627642862
501PhosphorylationLEDFFTATEGQYQPQ
HHHHHHHCCCCCCCC
37.2821082442
505PhosphorylationFTATEGQYQPQP---
HHHCCCCCCCCC---
32.7722322096
505DephosphorylationFTATEGQYQPQP---
HHHCCCCCCCCC---
32.778663450
535 (in isoform 3)Phosphorylation-27642862

Upstream regulatory proteins (kinases for phosphorylation sites, E3 ubiquitin ligases of ubiquitination sites, ...)
Modified Location Modified Residue Modification Type of Upstream Proteins Gene Name of Upstream Proteins UniProt AC of Upstream Proteins Sources
42SPhosphorylationKinasePRKACAP17612
GPS
42SPhosphorylationKinasePRKCAP17252
GPS
42SPhosphorylationKinaseMAPK1P28482
GPS
42SPhosphorylationKinaseMAPK3P27361
GPS
59SPhosphorylationKinaseMAPK1P28482
GPS
59SPhosphorylationKinaseMAPK3P27361
GPS
59SPhosphorylationKinaseMAPK-FAMILY-GPS
192YPhosphorylationKinaseSYKP43405
GPS
394YPhosphorylationKinaseLCKP06239
PSP
394YPhosphorylationKinaseAXLP30530
PSP
394YPhosphorylationKinaseYOPHP08538
PSP
505YPhosphorylationKinaseCSKP41240
Uniprot
505YPhosphorylationKinaseLCKP06239
PSP
-KUbiquitinationE3 ubiquitin ligaseCBLP22681
PMID:11904433
-KUbiquitinationE3 ubiquitin ligaseSMURF1Q9HCE7
PMID:20804422

Functions of PTM Sites
Modified Location Modified Residue Modification Function Reference

Oops, there are no descriptions of PTM sites of LCK_HUMAN !!

Disease-associated PTM Sites based on SAP

* Distance = the distance between SAP position and PTM sites.

Modified Location Modification Variant Position
(Distance <= 10)
Residue Change SAP Related Disease Reference

Oops, there are no SNP-PTM records of LCK_HUMAN !!

Protein-Protein Interaction
Interacting Protein Gene Name Interaction Type PPI Reference Domain-Domain Interactions
P85A_HUMANPIK3R1physical
8294442
U119A_HUMANUNC119physical
14757743
PK3CA_HUMANPIK3CAphysical
14583609
NOTC1_HUMANNOTCH1physical
14583609
CTND1_HUMANCTNND1physical
12835311
FAK2_HUMANPTK2Bphysical
9091579
CD44_HUMANCD44physical
8576267
CBL_HUMANCBLphysical
11904433
KIT_HUMANKITphysical
9788619
SKAP1_HUMANSKAP1physical
9195899
PK3CA_HUMANPIK3CAphysical
8246987
PHAG1_HUMANPAG1physical
10790433
TRAT1_HUMANTRAT1physical
10790433
ZAP70_HUMANZAP70physical
10318843
PECA1_HUMANPECAM1physical
9624175
TNR6_HUMANFASphysical
8864141
SQSTM_HUMANSQSTM1physical
8650207
RASA1_HUMANRASA1physical
11389730
KSYK_HUMANSYKphysical
7539035
ZAP70_HUMANZAP70physical
7539035
PTN6_HUMANPTPN6physical
8114715
PTPRC_HUMANPTPRCphysical
15085197
NEF_HV1H2nefphysical
9778343
HS90A_HUMANHSP90AA1physical
16888650
GCR_HUMANNR3C1physical
16888650
KHDR1_HUMANKHDRBS1physical
16888650
SH3K1_HUMANSH3KBP1physical
15707590
SKAP1_HUMANSKAP1physical
10229084
LAT_HUMANLATphysical
14523017
CD3E_HUMANCD3Ephysical
14523017
CD3Z_HUMANCD247physical
14523017
F174A_HUMANFAM174Aphysical
16274251
SOS1_HUMANSOS1physical
16274251
KHDR1_HUMANKHDRBS1physical
16274251
IL2RB_HUMANIL2RBphysical
21834013
CBL_HUMANCBLphysical
8626543
SOCS1_HUMANSOCS1physical
21234523
SOCS2_HUMANSOCS2physical
21234523
SOCS3_HUMANSOCS3physical
21234523
CISH_HUMANCISHphysical
21234523
LCK_HUMANLCKphysical
20372794
ZAP70_HUMANZAP70physical
8798643
LAT_HUMANLATphysical
16938345
KHDR1_HUMANKHDRBS1physical
16107303
CBL_HUMANCBLphysical
16107303
WASP_HUMANWASphysical
16107303
G3BP1_HUMANG3BP1physical
15743820
MK01_HUMANMAPK1physical
15967991
SMAD2_HUMANSMAD2physical
16806069
SMAD3_HUMANSMAD3physical
16806069
WASP_HUMANWASphysical
16293614
WASL_HUMANWASLphysical
16293614
BAG6_HUMANBAG6physical
22863785
CDKAL_HUMANCDKAL1physical
25416956
LZTS2_HUMANLZTS2physical
25416956
BRCA1_HUMANBRCA1physical
25184681
DAF_HUMANCD55physical
25241761
DLG1_HUMANDLG1physical
25241761

Drug and Disease Associations
Kegg Disease
H00093 Combined immunodeficiencies (CIDs), including the following nine diseases: X-linked hyper IgM syndro
OMIM Disease
Note=A chromosomal aberration involving LCK is found in leukemias. Translocation t(1
7)(p34
q34) with TCRB.
615758
Kegg Drug
There are no disease associations of PTM sites.
DrugBank
There are no disease associations of PTM sites.
Regulatory Network of LCK_HUMAN

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Related Literatures of Post-Translational Modification
Acetylation
ReferencePubMed
"Lysine acetylation targets protein complexes and co-regulates majorcellular functions.";
Choudhary C., Kumar C., Gnad F., Nielsen M.L., Rehman M., Walther T.,Olsen J.V., Mann M.;
Science 325:834-840(2009).
Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT LYS-179, AND MASS SPECTROMETRY.
Phosphorylation
ReferencePubMed
"Quantitative phosphoproteomic analysis of T cell receptor signalingreveals system-wide modulation of protein-protein interactions.";
Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K.,Rodionov V., Han D.K.;
Sci. Signal. 2:RA46-RA46(2009).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-102; THR-159; SER-162;TYR-192; SER-194 AND TYR-505, AND MASS SPECTROMETRY.
"Proteomics analysis of protein kinases by target class-selectiveprefractionation and tandem mass spectrometry.";
Wissing J., Jaensch L., Nimtz M., Dieterich G., Hornberger R.,Keri G., Wehland J., Daub H.;
Mol. Cell. Proteomics 6:537-547(2007).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-162; TYR-192; SER-213;TYR-394; THR-501 AND TYR-505, AND MASS SPECTROMETRY.
"Large-scale proteomics analysis of the human kinome.";
Oppermann F.S., Gnad F., Olsen J.V., Hornberger R., Greff Z., Keri G.,Mann M., Daub H.;
Mol. Cell. Proteomics 8:1751-1764(2009).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-505, AND MASSSPECTROMETRY.
"Kinase-selective enrichment enables quantitative phosphoproteomics ofthe kinome across the cell cycle.";
Daub H., Olsen J.V., Bairlein M., Gnad F., Oppermann F.S., Korner R.,Greff Z., Keri G., Stemmann O., Mann M.;
Mol. Cell 31:438-448(2008).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-505, AND MASSSPECTROMETRY.
"Global survey of phosphotyrosine signaling identifies oncogenickinases in lung cancer.";
Rikova K., Guo A., Zeng Q., Possemato A., Yu J., Haack H., Nardone J.,Lee K., Reeves C., Li Y., Hu Y., Tan Z., Stokes M., Sullivan L.,Mitchell J., Wetzel R., Macneill J., Ren J.M., Yuan J.,Bakalarski C.E., Villen J., Kornhauser J.M., Smith B., Li D., Zhou X.,Gygi S.P., Gu T.-L., Polakiewicz R.D., Rush J., Comb M.J.;
Cell 131:1190-1203(2007).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-192 AND TYR-505, ANDMASS SPECTROMETRY.
"Immunoaffinity profiling of tyrosine phosphorylation in cancercells.";
Rush J., Moritz A., Lee K.A., Guo A., Goss V.L., Spek E.J., Zhang H.,Zha X.-M., Polakiewicz R.D., Comb M.J.;
Nat. Biotechnol. 23:94-101(2005).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-394 AND TYR-505, ANDMASS SPECTROMETRY.
"Detection of a physical and functional interaction between Csk andLck which involves the SH2 domain of Csk and is mediated byautophosphorylation of Lck on tyrosine 394.";
Bougeret C., Delaunay T., Romero F., Jullien P., Sabe H., Hanafusa H.,Benarous R., Fischer S.;
J. Biol. Chem. 271:7465-7472(1996).
Cited for: PHOSPHORYLATION AT TYR-505 BY CSK, AND AUTOPHOSPHORYLATION.
"The human p50csk tyrosine kinase phosphorylates p56lck at Tyr-505 anddown regulates its catalytic activity.";
Bergman M., Mustelin T., Oetken C., Partanen J., Flint N.A.,Amrein K.E., Autero M., Burn P., Alitalo K.;
EMBO J. 11:2919-2924(1992).
Cited for: PHOSPHORYLATION AT TYR-505.
"Oncogenic activation of the Lck protein accompanies translocation ofthe LCK gene in the human HSB2 T-cell leukemia.";
Wright D.D., Sefton B.M., Kamps M.P.;
Mol. Cell. Biol. 14:2429-2437(1994).
Cited for: NUCLEOTIDE SEQUENCE [MRNA], VARIANTS LEU-28; GLN-LYS-PRO-232 INS;VAL-353 AND LEU-447, AND PHOSPHORYLATION AT TYR-394 AND TYR-505.

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