| UniProt ID | SERA_HUMAN | |
|---|---|---|
| UniProt AC | O43175 | |
| Protein Name | D-3-phosphoglycerate dehydrogenase | |
| Gene Name | PHGDH | |
| Organism | Homo sapiens (Human). | |
| Sequence Length | 533 | |
| Subcellular Localization | ||
| Protein Description | Catalyzes the reversible oxidation of 3-phospho-D-glycerate to 3-phosphonooxypyruvate, the first step of the phosphorylated L-serine biosynthesis pathway. Also catalyzes the reversible oxidation of 2-hydroxyglutarate to 2-oxoglutarate and the reversible oxidation of (S)-malate to oxaloacetate.. | |
| Protein Sequence | MAFANLRKVLISDSLDPCCRKILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVKGKSLTGVVNAQALTSAFSPHTKPWIGLAEALGTLMRAWAGSPKGTIQVITQGTSLKNAGNCLSPAVIVGLLKEASKQADVNLVNAKLLVKEAGLNVTTSHSPAAPGEQGFGECLLAVALAGAPYQAVGLVQGTTPVLQGLNGAVFRPEVPLRRDLPLLLFRTQTSDPAMLPTMIGLLAEAGVRLLSYQTSLVSDGETWHVMGISSLLPSLEAWKQHVTEAFQFHF | |
| Overview of Protein Modification Sites with Functional and Structural Information | ||
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* ASA = Accessible Surface Area
| Locations | Modification | Substrate Peptides & Secondary Structure |
ASA (%) | Reference | Orthologous Protein Cluster |
|---|---|---|---|---|---|
| 2 | Acetylation | ------MAFANLRKV ------CCCCCHHHH | 16.56 | - | |
| 7 | Methylation | -MAFANLRKVLISDS -CCCCCHHHHHHHCC | 27.18 | 115487443 | |
| 8 | 2-Hydroxyisobutyrylation | MAFANLRKVLISDSL CCCCCHHHHHHHCCC | 44.55 | - | |
| 8 | Acetylation | MAFANLRKVLISDSL CCCCCHHHHHHHCCC | 44.55 | 27452117 | |
| 8 | Ubiquitination | MAFANLRKVLISDSL CCCCCHHHHHHHCCC | 44.55 | 29967540 | |
| 12 | Phosphorylation | NLRKVLISDSLDPCC CHHHHHHHCCCCHHH | 19.58 | 28450419 | |
| 14 | Phosphorylation | RKVLISDSLDPCCRK HHHHHHCCCCHHHHH | 28.07 | 25159151 | |
| 19 | Glutathionylation | SDSLDPCCRKILQDG HCCCCHHHHHHHHHC | 6.37 | 22555962 | |
| 21 | 2-Hydroxyisobutyrylation | SLDPCCRKILQDGGL CCCHHHHHHHHHCCC | 33.58 | - | |
| 21 | Acetylation | SLDPCCRKILQDGGL CCCHHHHHHHHHCCC | 33.58 | - | |
| 21 | Malonylation | SLDPCCRKILQDGGL CCCHHHHHHHHHCCC | 33.58 | 26320211 | |
| 21 | Sumoylation | SLDPCCRKILQDGGL CCCHHHHHHHHHCCC | 33.58 | 25114211 | |
| 21 | Ubiquitination | SLDPCCRKILQDGGL CCCHHHHHHHHHCCC | 33.58 | 23000965 | |
| 31 | Ubiquitination | QDGGLQVVEKQNLSK HHCCCEEEEECCCCH | 4.99 | 22817900 | |
| 32 | Ubiquitination | DGGLQVVEKQNLSKE HCCCEEEEECCCCHH | 50.50 | 23000965 | |
| 33 | 2-Hydroxyisobutyrylation | GGLQVVEKQNLSKEE CCCEEEEECCCCHHH | 32.64 | - | |
| 33 | Acetylation | GGLQVVEKQNLSKEE CCCEEEEECCCCHHH | 32.64 | 23954790 | |
| 33 | Ubiquitination | GGLQVVEKQNLSKEE CCCEEEEECCCCHHH | 32.64 | 23000965 | |
| 34 | Ubiquitination | GLQVVEKQNLSKEEL CCEEEEECCCCHHHH | 42.46 | 22817900 | |
| 38 | Ubiquitination | VEKQNLSKEELIAEL EEECCCCHHHHHHHH | 59.37 | 23000965 | |
| 43 | Ubiquitination | LSKEELIAELQDCEG CCHHHHHHHHHCCCC | 24.87 | 23000965 | |
| 48 | Glutathionylation | LIAELQDCEGLIVRS HHHHHHCCCCEEECC | 2.63 | 22555962 | |
| 48 | Ubiquitination | LIAELQDCEGLIVRS HHHHHHCCCCEEECC | 2.63 | 23000965 | |
| 55 | Phosphorylation | CEGLIVRSATKVTAD CCCEEECCCCCCHHH | 29.42 | 28450419 | |
| 57 | Phosphorylation | GLIVRSATKVTADVI CEEECCCCCCHHHHH | 27.56 | 28450419 | |
| 58 | 2-Hydroxyisobutyrylation | LIVRSATKVTADVIN EEECCCCCCHHHHHH | 36.99 | - | |
| 58 | Acetylation | LIVRSATKVTADVIN EEECCCCCCHHHHHH | 36.99 | 25953088 | |
| 58 | Malonylation | LIVRSATKVTADVIN EEECCCCCCHHHHHH | 36.99 | 26320211 | |
| 58 | Ubiquitination | LIVRSATKVTADVIN EEECCCCCCHHHHHH | 36.99 | 23000965 | |
| 60 | Phosphorylation | VRSATKVTADVINAA ECCCCCCHHHHHHHH | 20.78 | 28450419 | |
| 69 | 2-Hydroxyisobutyrylation | DVINAAEKLQVVGRA HHHHHHHHHHEECCC | 39.22 | - | |
| 69 | Acetylation | DVINAAEKLQVVGRA HHHHHHHHHHEECCC | 39.22 | 25953088 | |
| 69 | Ubiquitination | DVINAAEKLQVVGRA HHHHHHHHHHEECCC | 39.22 | 23000965 | |
| 75 | Methylation | EKLQVVGRAGTGVDN HHHHEECCCCCCCCC | 20.45 | 115487459 | |
| 78 | Phosphorylation | QVVGRAGTGVDNVDL HEECCCCCCCCCCCH | 32.80 | 29255136 | |
| 89 | Phosphorylation | NVDLEAATRKGILVM CCCHHHHCCCCEEEE | 39.71 | 20068231 | |
| 98 | Phosphorylation | KGILVMNTPNGNSLS CCEEEEECCCCCCCC | 10.47 | 21406692 | |
| 103 | Phosphorylation | MNTPNGNSLSAAELT EECCCCCCCCHHHHH | 25.71 | 21406692 | |
| 105 | Phosphorylation | TPNGNSLSAAELTCG CCCCCCCCHHHHHHH | 25.83 | 21406692 | |
| 110 | Phosphorylation | SLSAAELTCGMIMCL CCCHHHHHHHHHHHH | 9.87 | 21406692 | |
| 125 | Phosphorylation | ARQIPQATASMKDGK HHHCCHHHHHCCCCC | 17.64 | 21406692 | |
| 127 | Phosphorylation | QIPQATASMKDGKWE HCCHHHHHCCCCCCE | 23.24 | 21406692 | |
| 128 | Sulfoxidation | IPQATASMKDGKWER CCHHHHHCCCCCCEE | 4.21 | 30846556 | |
| 129 | 2-Hydroxyisobutyrylation | PQATASMKDGKWERK CHHHHHCCCCCCEEH | 61.91 | - | |
| 129 | Ubiquitination | PQATASMKDGKWERK CHHHHHCCCCCCEEH | 61.91 | 21906983 | |
| 132 | Ubiquitination | TASMKDGKWERKKFM HHHCCCCCCEEHHHC | 56.89 | 22817900 | |
| 136 | Acetylation | KDGKWERKKFMGTEL CCCCCEEHHHCCEEE | 38.56 | 25953088 | |
| 136 | Ubiquitination | KDGKWERKKFMGTEL CCCCCEEHHHCCEEE | 38.56 | - | |
| 137 | Acetylation | DGKWERKKFMGTELN CCCCEEHHHCCEEEC | 46.97 | 25953088 | |
| 137 | Malonylation | DGKWERKKFMGTELN CCCCEEHHHCCEEEC | 46.97 | 26320211 | |
| 137 | Ubiquitination | DGKWERKKFMGTELN CCCCEEHHHCCEEEC | 46.97 | 29967540 | |
| 139 | Sulfoxidation | KWERKKFMGTELNGK CCEEHHHCCEEECCE | 9.98 | 21406390 | |
| 141 | Phosphorylation | ERKKFMGTELNGKTL EEHHHCCEEECCEEE | 26.05 | - | |
| 146 | Ubiquitination | MGTELNGKTLGILGL CCEEECCEEEEEECH | 39.23 | 23000965 | |
| 147 | Phosphorylation | GTELNGKTLGILGLG CEEECCEEEEEECHH | 31.45 | 21712546 | |
| 166 | Phosphorylation | EVATRMQSFGMKTIG HHHHHHHHCCCEECC | 17.90 | 27499020 | |
| 166 | Ubiquitination | EVATRMQSFGMKTIG HHHHHHHHCCCEECC | 17.90 | 22817900 | |
| 169 | Ubiquitination | TRMQSFGMKTIGYDP HHHHHCCCEECCCCC | 3.05 | 22817900 | |
| 177 | Ubiquitination | KTIGYDPIISPEVSA EECCCCCCCCCHHHH | 4.44 | 22817900 | |
| 180 | Ubiquitination | GYDPIISPEVSASFG CCCCCCCCHHHHHCC | 35.28 | 22817900 | |
| 183 | Ubiquitination | PIISPEVSASFGVQQ CCCCCHHHHHCCCCC | 19.28 | 23000965 | |
| 191 | Ubiquitination | ASFGVQQLPLEEIWP HHCCCCCCCHHHHHH | 2.67 | 21963094 | |
| 194 | Ubiquitination | GVQQLPLEEIWPLCD CCCCCCHHHHHHHCC | 45.56 | 23000965 | |
| 203 | Ubiquitination | IWPLCDFITVHTPLL HHHHCCEEEECCCCC | 2.22 | 22817900 | |
| 206 | Ubiquitination | LCDFITVHTPLLPST HCCEEEECCCCCCCC | 17.08 | 22817900 | |
| 210 | Ubiquitination | ITVHTPLLPSTTGLL EEECCCCCCCCCCCC | 3.11 | 21963094 | |
| 212 | Ubiquitination | VHTPLLPSTTGLLND ECCCCCCCCCCCCCC | 38.27 | 22817900 | |
| 220 | Ubiquitination | TTGLLNDNTFAQCKK CCCCCCCCCHHHHCC | 35.70 | 23000965 | |
| 236 | Methylation | VRVVNCARGGIVDEG CEEEECCCCCCCCHH | 46.18 | 115487467 | |
| 247 | Methylation | VDEGALLRALQSGQC CCHHHHHHHHHCCCC | 33.82 | 115487451 | |
| 253 | Ubiquitination | LRALQSGQCAGAALD HHHHHCCCCCCEEEH | 21.09 | 27667366 | |
| 254 | Glutathionylation | RALQSGQCAGAALDV HHHHCCCCCCEEEHC | 4.26 | 22555962 | |
| 266 | Ubiquitination | LDVFTEEPPRDRALV EHCCCCCCCCCCCCC | 24.00 | 21963094 | |
| 280 | Phosphorylation | VDHENVISCPHLGAS CCCCCCCCCCCCCCC | 19.81 | 27251275 | |
| 281 | S-nitrosocysteine | DHENVISCPHLGAST CCCCCCCCCCCCCCH | 1.37 | - | |
| 281 | Glutathionylation | DHENVISCPHLGAST CCCCCCCCCCCCCCH | 1.37 | 22555962 | |
| 281 | S-nitrosylation | DHENVISCPHLGAST CCCCCCCCCCCCCCH | 1.37 | 22178444 | |
| 282 | Ubiquitination | HENVISCPHLGASTK CCCCCCCCCCCCCHH | 20.96 | 21963094 | |
| 286 | Ubiquitination | ISCPHLGASTKEAQS CCCCCCCCCHHHHHH | 22.01 | 27667366 | |
| 287 | Phosphorylation | SCPHLGASTKEAQSR CCCCCCCCHHHHHHH | 37.91 | 28857561 | |
| 288 | Phosphorylation | CPHLGASTKEAQSRC CCCCCCCHHHHHHHH | 32.16 | 29083192 | |
| 289 | 2-Hydroxyisobutyrylation | PHLGASTKEAQSRCG CCCCCCHHHHHHHHC | 48.86 | - | |
| 289 | Acetylation | PHLGASTKEAQSRCG CCCCCCHHHHHHHHC | 48.86 | 26051181 | |
| 289 | Malonylation | PHLGASTKEAQSRCG CCCCCCHHHHHHHHC | 48.86 | 26320211 | |
| 289 | Ubiquitination | PHLGASTKEAQSRCG CCCCCCHHHHHHHHC | 48.86 | 21963094 | |
| 295 | Glutathionylation | TKEAQSRCGEEIAVQ HHHHHHHHCHHHHHH | 11.02 | 22555962 | |
| 296 | Ubiquitination | KEAQSRCGEEIAVQF HHHHHHHCHHHHHHH | 34.17 | 23000965 | |
| 300 | Ubiquitination | SRCGEEIAVQFVDMV HHHCHHHHHHHHHCC | 7.73 | 23000965 | |
| 306 | Sulfoxidation | IAVQFVDMVKGKSLT HHHHHHHCCCCCCCC | 2.56 | 30846556 | |
| 308 | Ubiquitination | VQFVDMVKGKSLTGV HHHHHCCCCCCCCCE | 54.72 | 21963094 | |
| 310 | Ubiquitination | FVDMVKGKSLTGVVN HHHCCCCCCCCCEEE | 36.25 | 22817900 | |
| 322 | Phosphorylation | VVNAQALTSAFSPHT EEEHHHHHHCCCCCC | 22.48 | 24719451 | |
| 323 | Phosphorylation | VNAQALTSAFSPHTK EEHHHHHHCCCCCCC | 28.32 | 20068231 | |
| 326 | Phosphorylation | QALTSAFSPHTKPWI HHHHHCCCCCCCCCH | 18.58 | 20068231 | |
| 326 | Ubiquitination | QALTSAFSPHTKPWI HHHHHCCCCCCCCCH | 18.58 | 21963094 | |
| 329 | Phosphorylation | TSAFSPHTKPWIGLA HHCCCCCCCCCHHHH | 42.03 | 29449344 | |
| 330 | Ubiquitination | SAFSPHTKPWIGLAE HCCCCCCCCCHHHHH | 35.01 | 32015554 | |
| 337 | Ubiquitination | KPWIGLAEALGTLMR CCCHHHHHHHHHHHH | 49.85 | 21963094 | |
| 345 | Ubiquitination | ALGTLMRAWAGSPKG HHHHHHHHHCCCCCC | 6.11 | 21963094 | |
| 347 | Ubiquitination | GTLMRAWAGSPKGTI HHHHHHHCCCCCCEE | 13.96 | 22817900 | |
| 349 | Phosphorylation | LMRAWAGSPKGTIQV HHHHHCCCCCCEEEE | 18.72 | 29396449 | |
| 351 | Acetylation | RAWAGSPKGTIQVIT HHHCCCCCCEEEEEE | 71.08 | 26051181 | |
| 351 | Succinylation | RAWAGSPKGTIQVIT HHHCCCCCCEEEEEE | 71.08 | 23954790 | |
| 351 | Ubiquitination | RAWAGSPKGTIQVIT HHHCCCCCCEEEEEE | 71.08 | 27667366 | |
| 353 | Phosphorylation | WAGSPKGTIQVITQG HCCCCCCEEEEEECC | 17.86 | 28555341 | |
| 356 | Ubiquitination | SPKGTIQVITQGTSL CCCCEEEEEECCCCC | 4.52 | 21963094 | |
| 358 | Phosphorylation | KGTIQVITQGTSLKN CCEEEEEECCCCCCC | 23.30 | 20873877 | |
| 358 | Ubiquitination | KGTIQVITQGTSLKN CCEEEEEECCCCCCC | 23.30 | 22817900 | |
| 361 | Phosphorylation | IQVITQGTSLKNAGN EEEEECCCCCCCCCC | 22.52 | 20873877 | |
| 362 | Phosphorylation | QVITQGTSLKNAGNC EEEECCCCCCCCCCC | 44.14 | 25159151 | |
| 363 | Ubiquitination | VITQGTSLKNAGNCL EEECCCCCCCCCCCC | 5.08 | 21963094 | |
| 364 | Acetylation | ITQGTSLKNAGNCLS EECCCCCCCCCCCCC | 44.51 | 26051181 | |
| 364 | Ubiquitination | ITQGTSLKNAGNCLS EECCCCCCCCCCCCC | 44.51 | 21906983 | |
| 369 | S-nitrosocysteine | SLKNAGNCLSPAVIV CCCCCCCCCCHHHHH | 3.78 | - | |
| 369 | Glutathionylation | SLKNAGNCLSPAVIV CCCCCCCCCCHHHHH | 3.78 | 22555962 | |
| 369 | S-nitrosylation | SLKNAGNCLSPAVIV CCCCCCCCCCHHHHH | 3.78 | 18335467 | |
| 369 | S-palmitoylation | SLKNAGNCLSPAVIV CCCCCCCCCCHHHHH | 3.78 | 29575903 | |
| 371 | Phosphorylation | KNAGNCLSPAVIVGL CCCCCCCCHHHHHHH | 17.02 | 25159151 | |
| 380 | Acetylation | AVIVGLLKEASKQAD HHHHHHHHHHHHHCC | 57.17 | 26051181 | |
| 380 | Ubiquitination | AVIVGLLKEASKQAD HHHHHHHHHHHHHCC | 57.17 | 21906983 | |
| 382 | Ubiquitination | IVGLLKEASKQADVN HHHHHHHHHHHCCCC | 22.05 | 21963094 | |
| 384 | Malonylation | GLLKEASKQADVNLV HHHHHHHHHCCCCHH | 57.46 | 26320211 | |
| 384 | Ubiquitination | GLLKEASKQADVNLV HHHHHHHHHCCCCHH | 57.46 | 21906983 | |
| 388 | Ubiquitination | EASKQADVNLVNAKL HHHHHCCCCHHHHHH | 7.18 | 27667366 | |
| 394 | 2-Hydroxyisobutyrylation | DVNLVNAKLLVKEAG CCCHHHHHHHHHHHC | 36.83 | - | |
| 394 | Acetylation | DVNLVNAKLLVKEAG CCCHHHHHHHHHHHC | 36.83 | 23236377 | |
| 394 | Malonylation | DVNLVNAKLLVKEAG CCCHHHHHHHHHHHC | 36.83 | 26320211 | |
| 394 | Ubiquitination | DVNLVNAKLLVKEAG CCCHHHHHHHHHHHC | 36.83 | 23000965 | |
| 398 | Ubiquitination | VNAKLLVKEAGLNVT HHHHHHHHHHCCCCC | 41.64 | 23000965 | |
| 399 | Ubiquitination | NAKLLVKEAGLNVTT HHHHHHHHHCCCCCC | 40.25 | 27667366 | |
| 401 | Ubiquitination | KLLVKEAGLNVTTSH HHHHHHHCCCCCCCC | 20.90 | 21963094 | |
| 412 | Ubiquitination | TTSHSPAAPGEQGFG CCCCCCCCCCCCCHH | 18.93 | 21963094 | |
| 417 | Ubiquitination | PAAPGEQGFGECLLA CCCCCCCCHHHHHHH | 28.37 | 21963094 | |
| 421 | Ubiquitination | GEQGFGECLLAVALA CCCCHHHHHHHHHHC | 3.74 | 27667366 | |
| 425 | Ubiquitination | FGECLLAVALAGAPY HHHHHHHHHHCCCCE | 4.53 | 27667366 | |
| 428 | Ubiquitination | CLLAVALAGAPYQAV HHHHHHHCCCCEEHH | 11.45 | 21963094 | |
| 431 | Ubiquitination | AVALAGAPYQAVGLV HHHHCCCCEEHHHHC | 22.35 | 23000965 | |
| 432 | Ubiquitination | VALAGAPYQAVGLVQ HHHCCCCEEHHHHCC | 14.47 | 27667366 | |
| 435 | Ubiquitination | AGAPYQAVGLVQGTT CCCCEEHHHHCCCCC | 3.43 | 23000965 | |
| 438 | Ubiquitination | PYQAVGLVQGTTPVL CEEHHHHCCCCCHHH | 3.97 | 21963094 | |
| 442 | Ubiquitination | VGLVQGTTPVLQGLN HHHCCCCCHHHCCCC | 20.44 | 23000965 | |
| 446 | Ubiquitination | QGTTPVLQGLNGAVF CCCCHHHCCCCCCCC | 55.34 | 23000965 | |
| 454 | Ubiquitination | GLNGAVFRPEVPLRR CCCCCCCCCCCCCCC | 21.63 | 21963094 | |
| 458 | Ubiquitination | AVFRPEVPLRRDLPL CCCCCCCCCCCCCCE | 20.63 | 27667366 | |
| 468 | Ubiquitination | RDLPLLLFRTQTSDP CCCCEEEEECCCCCC | 8.84 | 23000965 | |
| 470 | Phosphorylation | LPLLLFRTQTSDPAM CCEEEEECCCCCCCH | 28.94 | 28348404 | |
| 472 | Phosphorylation | LLLFRTQTSDPAMLP EEEEECCCCCCCHHH | 34.19 | 28348404 | |
| 472 | Ubiquitination | LLLFRTQTSDPAMLP EEEEECCCCCCCHHH | 34.19 | 23000965 | |
| 473 | Phosphorylation | LLFRTQTSDPAMLPT EEEECCCCCCCHHHH | 31.60 | 28348404 | |
| 477 | Sulfoxidation | TQTSDPAMLPTMIGL CCCCCCCHHHHHHHH | 5.84 | 28183972 | |
| 480 | Phosphorylation | SDPAMLPTMIGLLAE CCCCHHHHHHHHHHH | 19.91 | 20068231 | |
| 481 | Sulfoxidation | DPAMLPTMIGLLAEA CCCHHHHHHHHHHHH | 1.85 | 28183972 | |
| 509 | Sulfoxidation | DGETWHVMGISSLLP CCCCEEEEEHHHHHH | 2.26 | 28183972 | |
| 522 | Ubiquitination | LPSLEAWKQHVTEAF HHHHHHHHHHHHHHH | 37.26 | - |
| Modified Location | Modified Residue | Modification | Type of Upstream Proteins | Gene Name of Upstream Proteins | UniProt AC of Upstream Proteins | Sources |
|---|---|---|---|---|---|---|
| 55 | S | Phosphorylation | Kinase | PRKCZ | Q05513 | GPS |
| 57 | T | Phosphorylation | Kinase | PRKCZ | Q05513 | GPS |
| 78 | T | Phosphorylation | Kinase | PRKCZ | Q05513 | GPS |
| - | K | Ubiquitination | E3 ubiquitin ligase | PRKN | O60260 | PMID:32478681 |
| Modified Location | Modified Residue | Modification | Function | Reference | ||
|---|---|---|---|---|---|---|
Oops, there are no descriptions of PTM sites of SERA_HUMAN !! | ||||||
* Distance = the distance between SAP position and PTM sites.
| Modified Location | Modification | Variant Position (Distance <= 10) |
Residue Change | SAP | Related Disease | Reference |
|---|---|---|---|---|---|---|
Oops, there are no SNP-PTM records of SERA_HUMAN !! | ||||||
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| Phosphorylation | |
| Reference | PubMed |
| "A quantitative atlas of mitotic phosphorylation."; Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E.,Elledge S.J., Gygi S.P.; Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008). Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-371, AND MASSSPECTROMETRY. | |