XRCC1_HUMAN - dbPTM
XRCC1_HUMAN - PTM Information in dbPTM
Basic Information of Protein
UniProt ID XRCC1_HUMAN
UniProt AC P18887
Protein Name DNA repair protein XRCC1
Gene Name XRCC1
Organism Homo sapiens (Human).
Sequence Length 633
Subcellular Localization Nucleus . Moves from the nucleoli to the global nuclear chromatin upon DNA damage.
Protein Description Involved in DNA single-strand break repair by mediating the assembly of DNA break repair protein complexes. Probably during DNA repair, negatively regulates ADP-ribose levels by modulating ADP-ribosyltransferase PARP1 activity..
Protein Sequence MPEIRLRHVVSCSSQDSTHCAENLLKADTYRKWRAAKAGEKTISVVLQLEKEEQIHSVDIGNDGSAFVEVLVGSSAGGAGEQDYEVLLVTSSFMSPSESRSGSNPNRVRMFGPDKLVRAAAEKRWDRVKIVCSQPYSKDSPFGLSFVRFHSPPDKDEAEAPSQKVTVTKLGQFRVKEEDESANSLRPGALFFSRINKTSPVTASDPAGPSYAAATLQASSAASSASPVSRAIGSTSKPQESPKGKRKLDLNQEEKKTPSKPPAQLSPSVPKRPKLPAPTRTPATAPVPARAQGAVTGKPRGEGTEPRRPRAGPEELGKILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGGRIVRKEWVLDCHRMRRRLPSRRYLMAGPGSSSEEDEASHSGGSGDEAPKLPQKQPQTKTKPTQAAGPSSPQKPPTPEETKAASPVLQEDIDIEGVQSEGQDNGAEDSGDTEDELRRVAEQKEHRLPPGQEENGEDPYAGSTDENTDSEEHQEPPDLPVPELPDFFQGKHFFLYGEFPGDERRKLIRYVTAFNGELEDNMSDRVQFVITAQEWDPSFEEALMDNPSLAFVRPRWIYSCNEKQKLLPHQLYGVVPQA
Overview of Protein Modification Sites with Functional and Structural Information
Experimental Post-Translational Modification Sites

* ASA = Accessible Surface Area

Locations Modification Substrate Peptides
&
Secondary Structure
ASA (%) Reference Orthologous
Protein Cluster
11PhosphorylationIRLRHVVSCSSQDST
EEEEEEEECCCCCCH
13.7527251275
13PhosphorylationLRHVVSCSSQDSTHC
EEEEEECCCCCCHHH
24.4327251275
14PhosphorylationRHVVSCSSQDSTHCA
EEEEECCCCCCHHHH
42.1920873877
17PhosphorylationVSCSSQDSTHCAENL
EECCCCCCHHHHHHH
16.6527251275
18PhosphorylationSCSSQDSTHCAENLL
ECCCCCCHHHHHHHH
29.3020873877
26AcetylationHCAENLLKADTYRKW
HHHHHHHHHHHHHHH
47.5926051181
42PhosphorylationAAKAGEKTISVVLQL
HHHCCCCEEEEEEEE
17.7422210691
44PhosphorylationKAGEKTISVVLQLEK
HCCCCEEEEEEEECC
16.0522210691
115AcetylationVRMFGPDKLVRAAAE
CEEECHHHHHHHHHH
52.6025953088
129UbiquitinationEKRWDRVKIVCSQPY
HHHHCEEEEEECCCC
30.25-
138UbiquitinationVCSQPYSKDSPFGLS
EECCCCCCCCCCCCE
57.28-
140PhosphorylationSQPYSKDSPFGLSFV
CCCCCCCCCCCCEEE
26.3521815630
145PhosphorylationKDSPFGLSFVRFHSP
CCCCCCCEEEEECCC
23.2928857561
151PhosphorylationLSFVRFHSPPDKDEA
CEEEEECCCCCCCCC
35.1025159151
155AcetylationRFHSPPDKDEAEAPS
EECCCCCCCCCCCCC
64.3426051181
162PhosphorylationKDEAEAPSQKVTVTK
CCCCCCCCCEEEEEE
50.0823312004
166PhosphorylationEAPSQKVTVTKLGQF
CCCCCEEEEEECEEE
29.5026714015
169AcetylationSQKVTVTKLGQFRVK
CCEEEEEECEEEECC
46.4123954790
169UbiquitinationSQKVTVTKLGQFRVK
CCEEEEEECEEEECC
46.4121890473
176SumoylationKLGQFRVKEEDESAN
ECEEEECCCCCCCCC
51.64-
176SumoylationKLGQFRVKEEDESAN
ECEEEECCCCCCCCC
51.6425114211
181PhosphorylationRVKEEDESANSLRPG
ECCCCCCCCCCCCCC
45.1028555341
184PhosphorylationEEDESANSLRPGALF
CCCCCCCCCCCCEEE
26.0226074081
193PhosphorylationRPGALFFSRINKTSP
CCCEEEEECCCCCCC
25.5626074081
198PhosphorylationFFSRINKTSPVTASD
EEECCCCCCCCCCCC
33.5025159151
199PhosphorylationFSRINKTSPVTASDP
EECCCCCCCCCCCCC
20.9825159151
202PhosphorylationINKTSPVTASDPAGP
CCCCCCCCCCCCCCC
24.6730266825
204PhosphorylationKTSPVTASDPAGPSY
CCCCCCCCCCCCCCH
34.4630266825
210PhosphorylationASDPAGPSYAAATLQ
CCCCCCCCHHHHHHH
26.8730266825
211PhosphorylationSDPAGPSYAAATLQA
CCCCCCCHHHHHHHH
11.9130266825
215PhosphorylationGPSYAAATLQASSAA
CCCHHHHHHHHHHHH
18.0630266825
219PhosphorylationAAATLQASSAASSAS
HHHHHHHHHHHHCCC
13.9321955146
220PhosphorylationAATLQASSAASSASP
HHHHHHHHHHHCCCH
30.7628176443
223PhosphorylationLQASSAASSASPVSR
HHHHHHHHCCCHHHH
26.5921955146
224PhosphorylationQASSAASSASPVSRA
HHHHHHHCCCHHHHH
28.2125159151
226PhosphorylationSSAASSASPVSRAIG
HHHHHCCCHHHHHHC
27.9925159151
229PhosphorylationASSASPVSRAIGSTS
HHCCCHHHHHHCCCC
21.2730278072
234PhosphorylationPVSRAIGSTSKPQES
HHHHHHCCCCCCCCC
24.3223927012
234O-linked_GlycosylationPVSRAIGSTSKPQES
HHHHHHCCCCCCCCC
24.32OGP
235PhosphorylationVSRAIGSTSKPQESP
HHHHHCCCCCCCCCC
35.2430278072
236PhosphorylationSRAIGSTSKPQESPK
HHHHCCCCCCCCCCC
44.0023401153
236O-linked_GlycosylationSRAIGSTSKPQESPK
HHHHCCCCCCCCCCC
44.00OGP
237AcetylationRAIGSTSKPQESPKG
HHHCCCCCCCCCCCC
51.3026051181
241PhosphorylationSTSKPQESPKGKRKL
CCCCCCCCCCCCCCC
27.0229255136
241O-linked_GlycosylationSTSKPQESPKGKRKL
CCCCCCCCCCCCCCC
27.02OGP
247SumoylationESPKGKRKLDLNQEE
CCCCCCCCCCCCHHH
50.25-
247SumoylationESPKGKRKLDLNQEE
CCCCCCCCCCCCHHH
50.25-
256AcetylationDLNQEEKKTPSKPPA
CCCHHHCCCCCCCHH
69.7925953088
256SumoylationDLNQEEKKTPSKPPA
CCCHHHCCCCCCCHH
69.79-
256SumoylationDLNQEEKKTPSKPPA
CCCHHHCCCCCCCHH
69.79-
257PhosphorylationLNQEEKKTPSKPPAQ
CCHHHCCCCCCCHHH
43.8125159151
259PhosphorylationQEEKKTPSKPPAQLS
HHHCCCCCCCHHHCC
64.1325159151
260AcetylationEEKKTPSKPPAQLSP
HHCCCCCCCHHHCCC
57.1188077
266PhosphorylationSKPPAQLSPSVPKRP
CCCHHHCCCCCCCCC
11.7523927012
268PhosphorylationPPAQLSPSVPKRPKL
CHHHCCCCCCCCCCC
47.9125159151
271AcetylationQLSPSVPKRPKLPAP
HCCCCCCCCCCCCCC
78.2588081
279PhosphorylationRPKLPAPTRTPATAP
CCCCCCCCCCCCCCC
49.6422617229
281PhosphorylationKLPAPTRTPATAPVP
CCCCCCCCCCCCCCC
21.5425159151
284PhosphorylationAPTRTPATAPVPARA
CCCCCCCCCCCCCCC
32.4724732914
296PhosphorylationARAQGAVTGKPRGEG
CCCCCCCCCCCCCCC
38.6722912867
296O-linked_GlycosylationARAQGAVTGKPRGEG
CCCCCCCCCCCCCCC
38.6768722349
298AcetylationAQGAVTGKPRGEGTE
CCCCCCCCCCCCCCC
23.3623954790
310MethylationGTEPRRPRAGPEELG
CCCCCCCCCCHHHHH
50.82115920125
341UbiquitinationFRSELRDKALELGAK
CHHHHHHHHHHHCCC
48.73-
348UbiquitinationKALELGAKYRPDWTR
HHHHHCCCCCCCCCC
39.74-
348AcetylationKALELGAKYRPDWTR
HHHHHCCCCCCCCCC
39.7425953088
357PhosphorylationRPDWTRDSTHLICAF
CCCCCCCCCEEEEEE
17.9020068231
358PhosphorylationPDWTRDSTHLICAFA
CCCCCCCCEEEEEEC
25.6220873877
367PhosphorylationLICAFANTPKYSQVL
EEEEECCCCCHHHHC
20.0925159151
369UbiquitinationCAFANTPKYSQVLGL
EEECCCCCHHHHCCC
56.34-
370PhosphorylationAFANTPKYSQVLGLG
EECCCCCHHHHCCCC
12.92-
371PhosphorylationFANTPKYSQVLGLGG
ECCCCCHHHHCCCCC
21.6816397295
383UbiquitinationLGGRIVRKEWVLDCH
CCCEEEEEEHHHHHH
45.06-
383AcetylationLGGRIVRKEWVLDCH
CCCEEEEEEHHHHHH
45.0626051181
398PhosphorylationRMRRRLPSRRYLMAG
HHHHHCCCCCEEECC
33.7024719451
401PhosphorylationRRLPSRRYLMAGPGS
HHCCCCCEEECCCCC
10.3420068231
408PhosphorylationYLMAGPGSSSEEDEA
EEECCCCCCCHHHHH
33.5522115753
409PhosphorylationLMAGPGSSSEEDEAS
EECCCCCCCHHHHHH
47.9222115753
410PhosphorylationMAGPGSSSEEDEASH
ECCCCCCCHHHHHHH
46.8622115753
416PhosphorylationSSEEDEASHSGGSGD
CCHHHHHHHCCCCCC
19.0122115753
418PhosphorylationEEDEASHSGGSGDEA
HHHHHHHCCCCCCCC
42.2122115753
421PhosphorylationEASHSGGSGDEAPKL
HHHHCCCCCCCCCCC
46.7422115753
431UbiquitinationEAPKLPQKQPQTKTK
CCCCCCCCCCCCCCC
63.10-
431AcetylationEAPKLPQKQPQTKTK
CCCCCCCCCCCCCCC
63.1026051181
435PhosphorylationLPQKQPQTKTKPTQA
CCCCCCCCCCCCCCC
47.5721406692
437PhosphorylationQKQPQTKTKPTQAAG
CCCCCCCCCCCCCCC
45.7229209046
440PhosphorylationPQTKTKPTQAAGPSS
CCCCCCCCCCCCCCC
32.1823927012
440O-linked_GlycosylationPQTKTKPTQAAGPSS
CCCCCCCCCCCCCCC
32.1819664995
446PhosphorylationPTQAAGPSSPQKPPT
CCCCCCCCCCCCCCC
54.4525159151
446O-linked_GlycosylationPTQAAGPSSPQKPPT
CCCCCCCCCCCCCCC
54.4519664995
447PhosphorylationTQAAGPSSPQKPPTP
CCCCCCCCCCCCCCH
34.1920201521
447O-linked_GlycosylationTQAAGPSSPQKPPTP
CCCCCCCCCCCCCCH
34.1919664995
453PhosphorylationSSPQKPPTPEETKAA
CCCCCCCCHHHHHCC
52.4320201521
453O-linked_GlycosylationSSPQKPPTPEETKAA
CCCCCCCCHHHHHCC
52.4319664995
457PhosphorylationKPPTPEETKAASPVL
CCCCHHHHHCCCCCC
25.0723927012
461PhosphorylationPEETKAASPVLQEDI
HHHHHCCCCCCHHCC
22.0230278072
475PhosphorylationIDIEGVQSEGQDNGA
CCCCCCCCCCCCCCC
41.0930278072
485PhosphorylationQDNGAEDSGDTEDEL
CCCCCCCCCCCHHHH
30.0325159151
488PhosphorylationGAEDSGDTEDELRRV
CCCCCCCCHHHHHHH
49.1925159151
515PhosphorylationEENGEDPYAGSTDEN
CCCCCCCCCCCCCCC
35.6020873877
518PhosphorylationGEDPYAGSTDENTDS
CCCCCCCCCCCCCCC
25.2323909892
519PhosphorylationEDPYAGSTDENTDSE
CCCCCCCCCCCCCCH
46.5523909892
523PhosphorylationAGSTDENTDSEEHQE
CCCCCCCCCCHHCCC
38.5625218447
525PhosphorylationSTDENTDSEEHQEPP
CCCCCCCCHHCCCCC
42.7320873877
578PhosphorylationGELEDNMSDRVQFVI
CCCCCCCCCCEEEEE
28.64-
618UbiquitinationWIYSCNEKQKLLPHQ
EEEECCHHHHCCHHH
38.45-
618AcetylationWIYSCNEKQKLLPHQ
EEEECCHHHHCCHHH
38.4526051181
620UbiquitinationYSCNEKQKLLPHQLY
EECCHHHHCCHHHHC
64.16-
620AcetylationYSCNEKQKLLPHQLY
EECCHHHHCCHHHHC
64.1626051181
627PhosphorylationKLLPHQLYGVVPQA-
HCCHHHHCCCCCCC-
10.9928152594

Upstream regulatory proteins (kinases for phosphorylation sites, E3 ubiquitin ligases of ubiquitination sites, ...)
Modified Location Modified Residue Modification Type of Upstream Proteins Gene Name of Upstream Proteins UniProt AC of Upstream Proteins Sources
184SPhosphorylationKinaseCHEK2O96017
GPS
210SPhosphorylationKinaseCHEK2O96017
GPS
284TPhosphorylationKinaseCHEK2O96017
GPS
371SPhosphorylationKinaseDNAPKP78527
PSP
408SPhosphorylationKinaseCK2-FAMILY-GPS
408SPhosphorylationKinaseCSNK2A1P68400
GPS
409SPhosphorylationKinaseCK2-FAMILY-GPS
409SPhosphorylationKinaseCSNK2A1P68400
GPS
410SPhosphorylationKinaseCSNK2A1P68400
GPS
410SPhosphorylationKinaseCK2-FAMILY-GPS
416SPhosphorylationKinaseCSNK2A1P68400
GPS
418SPhosphorylationKinaseCSNK2A1P68400
GPS
421SPhosphorylationKinaseCSNK2A1P68400
GPS
421SPhosphorylationKinaseCK2-FAMILY-GPS
475SPhosphorylationKinaseCSNK2A1P68400
GPS
475SPhosphorylationKinaseCK2-FAMILY-GPS
485SPhosphorylationKinaseCK2-FAMILY-GPS
485SPhosphorylationKinaseCSNK2A2P19784
GPS
485SPhosphorylationKinaseCSNK2A1P68400
GPS
488TPhosphorylationKinaseCSNK2A2P19784
GPS
488TPhosphorylationKinaseCK2-FAMILY-GPS
488TPhosphorylationKinaseCSNK2A1P68400
GPS
515YPhosphorylationKinaseCSNK2A1P68400
GPS
518SPhosphorylationKinaseCSNK2A1P68400
GPS
518SPhosphorylationKinaseCSNK2A2P19784
GPS
518SPhosphorylationKinaseCK2-FAMILY-GPS
519TPhosphorylationKinaseCSNK2A2P19784
GPS
519TPhosphorylationKinaseCSNK2A1P68400
GPS
519TPhosphorylationKinaseCK2-FAMILY-GPS
523TPhosphorylationKinaseCSNK2A2P19784
GPS
523TPhosphorylationKinaseCK2-FAMILY-GPS
523TPhosphorylationKinaseCSNK2A1P68400
GPS
525SPhosphorylationKinaseCK2-FAMILY-GPS
525SPhosphorylationKinaseCSNK2A1P68400
GPS
578SPhosphorylationKinaseCSNK2A1P68400
GPS
-KUbiquitinationE3 ubiquitin ligaseRNF146Q9NTX7
PMID:21825151

Functions of PTM Sites
Modified Location Modified Residue Modification Function Reference
371SPhosphorylation

16397295

Disease-associated PTM Sites based on SAP

* Distance = the distance between SAP position and PTM sites.

Modified Location Modification Variant Position
(Distance <= 10)
Residue Change SAP Related Disease Reference

Oops, there are no SNP-PTM records of XRCC1_HUMAN !!

Protein-Protein Interaction
Interacting Protein Gene Name Interaction Type PPI Reference Domain-Domain Interactions
DNLI3_HUMANLIG3physical
11163244
PNKP_HUMANPNKPphysical
11163244
APTX_HUMANAPTXphysical
15555565
DNLI3_HUMANLIG3physical
17353931
PNKP_HUMANPNKPphysical
17353931
NEIL1_HUMANNEIL1physical
15260972
PCNA_HUMANPCNAphysical
15107487
DPOLB_HUMANPOLBphysical
15107487
APTX_HUMANAPTXphysical
15044383
P53_HUMANTP53physical
15044383
PARP1_HUMANPARP1physical
15044383
DPOLB_HUMANPOLBphysical
8978692
DNLI3_HUMANLIG3physical
8264637
DNLI3_HUMANLIG3physical
9136882
PARP1_HUMANPARP1physical
9584196
DNLI3_HUMANLIG3physical
9705932
APEX1_HUMANAPEX1physical
11707423
PARP2_HUMANPARP2physical
11948190
DNLI3_HUMANLIG3physical
20227374
POLK_HUMANPOLKphysical
20227374
DPOD1_HUMANPOLD1physical
20227374
PRAF3_HUMANARL6IP5physical
19208635
XPO1_HUMANXPO1physical
21909257
POLI_HUMANPOLIphysical
18923427
APTX_HUMANAPTXphysical
15367657
PNKP_HUMANPNKPphysical
15367657
DPOLB_HUMANPOLBphysical
15367657
APEX1_HUMANAPEX1physical
19934257
C1QBP_HUMANC1QBPphysical
26496610
DNLI3_HUMANLIG3physical
26496610
DPOLB_HUMANPOLBphysical
26496610
RAP1B_HUMANRAP1Bphysical
26496610
BRPF1_HUMANBRPF1physical
26496610
LIPA1_HUMANPPFIA1physical
26496610
GT2D1_HUMANGTF2IRD1physical
26496610
PPIH_HUMANPPIHphysical
26496610
XPOT_HUMANXPOTphysical
26496610
PNKP_HUMANPNKPphysical
26496610
SF3B6_HUMANSF3B6physical
26496610
M3K20_HUMANZAKphysical
26496610
APTX_HUMANAPTXphysical
26496610
S39AA_HUMANSLC39A10physical
26496610
GCC1_HUMANGCC1physical
26496610
RUSD4_HUMANRPUSD4physical
26496610
DPH7_HUMANDPH7physical
26496610
DPOLB_HUMANPOLBphysical
25423885
HS90A_HUMANHSP90AA1physical
25423885
PRKDC_HUMANPRKDCphysical
18678286

Drug and Disease Associations
Kegg Disease
There are no disease associations of PTM sites.
OMIM Disease
There are no disease associations of PTM sites.
Kegg Drug
There are no disease associations of PTM sites.
DrugBank
There are no disease associations of PTM sites.
Regulatory Network of XRCC1_HUMAN

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Related Literatures of Post-Translational Modification
Phosphorylation
ReferencePubMed
"Specific recognition of a multiply phosphorylated motif in the DNArepair scaffold XRCC1 by the FHA domain of human PNK.";
Ali A.A., Jukes R.M., Pearl L.H., Oliver A.W.;
Nucleic Acids Res. 37:1701-1712(2009).
Cited for: X-RAY CRYSTALLOGRAPHY (1.85 ANGSTROMS) OF 515-522 IN COMPLEX WITHPNKP, AND PHOSPHORYLATION AT SER-518; THR-519 AND THR-523.
"Quantitative phosphoproteomic analysis of T cell receptor signalingreveals system-wide modulation of protein-protein interactions.";
Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K.,Rodionov V., Han D.K.;
Sci. Signal. 2:RA46-RA46(2009).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-198; SER-199; SER-226;SER-241; THR-453; SER-461; SER-485 AND THR-488, AND MASS SPECTROMETRY.
"Lys-N and trypsin cover complementary parts of the phosphoproteome ina refined SCX-based approach.";
Gauci S., Helbig A.O., Slijper M., Krijgsveld J., Heck A.J.,Mohammed S.;
Anal. Chem. 81:4493-4501(2009).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-211; SER-226; SER-446;SER-447; THR-453 AND THR-457, AND MASS SPECTROMETRY.
"A quantitative atlas of mitotic phosphorylation.";
Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E.,Elledge S.J., Gygi S.P.;
Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-199; SER-226; SER-241;THR-257; SER-259; SER-266; SER-408; SER-409; SER-410; SER-418;SER-421; SER-447 AND THR-453, AND MASS SPECTROMETRY.
"Evaluation of the low-specificity protease elastase for large-scalephosphoproteome analysis.";
Wang B., Malik R., Nigg E.A., Korner R.;
Anal. Chem. 80:9526-9533(2008).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-241, AND MASSSPECTROMETRY.
"Global proteomic profiling of phosphopeptides using electron transferdissociation tandem mass spectrometry.";
Molina H., Horn D.M., Tang N., Mathivanan S., Pandey A.;
Proc. Natl. Acad. Sci. U.S.A. 104:2199-2204(2007).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-266; SER-447 ANDTHR-453, AND MASS SPECTROMETRY.
"XRCC1 is phosphorylated by DNA-dependent protein kinase in responseto DNA damage.";
Levy N., Martz A., Bresson A., Spenlehauer C., de Murcia G.,Menissier-de Murcia J.;
Nucleic Acids Res. 34:32-41(2006).
Cited for: SUBUNIT, AND PHOSPHORYLATION AT SER-371.
"Global, in vivo, and site-specific phosphorylation dynamics insignaling networks.";
Olsen J.V., Blagoev B., Gnad F., Macek B., Kumar C., Mortensen P.,Mann M.;
Cell 127:635-648(2006).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-408; SER-409; SER-410;SER-416; SER-418 AND SER-421, AND MASS SPECTROMETRY.

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