NIPA_HUMAN - dbPTM
NIPA_HUMAN - PTM Information in dbPTM
Basic Information of Protein
UniProt ID NIPA_HUMAN
UniProt AC Q86WB0
Protein Name Nuclear-interacting partner of ALK
Gene Name ZC3HC1
Organism Homo sapiens (Human).
Sequence Length 502
Subcellular Localization Nucleus .
Protein Description Essential component of a SCF-type E3 ligase complex, SCF(NIPA), a complex that controls mitotic entry by mediating ubiquitination and subsequent degradation of cyclin B1 (CCNB1). Its cell-cycle-dependent phosphorylation regulates the assembly of the SCF(NIPA) complex, restricting CCNB1 ubiquitination activity to interphase. Its inactivation results in nuclear accumulation of CCNB1 in interphase and premature mitotic entry. May have an antiapoptotic role in NPM-ALK-mediated signaling events..
Protein Sequence MAAPCEGQAFAVGVEKNWGAVVRSPEGTPQKIRQLIDEGIAPEEGGVDAKDTSATSQSVNGSPQAEQPSLESTSKEAFFSRVETFSSLKWAGKPFELSPLVCAKYGWVTVECDMLKCSSCQAFLCASLQPAFDFDRYKQRCAELKKALCTAHEKFCFWPDSPSPDRFGMLPLDEPAILVSEFLDRFQSLCHLDLQLPSLRPEDLKTMCLTEDKISLLLHLLEDELDHRTDERKTTIKLGSDIQVHVTACILSVCGWACSSSLESMQLSLITCSQCMRKVGLWGFQQIESSMTDLDASFGLTSSPIPGLEGRPERLPLVPESPRRMMTRSQDATFSPGSEQAEKSPGPIVSRTRSWDSSSPVDRPEPEAASPTTRTRPVTRSMGTGDTPGLEVPSSPLRKAKRARLCSSSSSDTSSRSFFDPTSQHRDWCPWVNITLGKESRENGGTEPDASAPAEPGWKAVLTILLAHKQSSQPAETDSMSLSEKSRKVFRIFRQWESLCSC
Overview of Protein Modification Sites with Functional and Structural Information
Experimental Post-Translational Modification Sites

* ASA = Accessible Surface Area

Locations Modification Substrate Peptides
&
Secondary Structure
ASA (%) Reference Orthologous
Protein Cluster
2Acetylation------MAAPCEGQA
------CCCCCCCCC
21.8022223895
12 (in isoform 2)Phosphorylation-7.7320068231
21 (in isoform 2)Phosphorylation-3.0320068231
23 (in isoform 2)Phosphorylation-39.6420068231
24PhosphorylationNWGAVVRSPEGTPQK
CCEEEEECCCCCHHH
18.7222167270
28PhosphorylationVVRSPEGTPQKIRQL
EEECCCCCHHHHHHH
22.3822167270
31AcetylationSPEGTPQKIRQLIDE
CCCCCHHHHHHHHHC
40.8525953088
31UbiquitinationSPEGTPQKIRQLIDE
CCCCCHHHHHHHHHC
40.8529967540
52PhosphorylationGGVDAKDTSATSQSV
CCCCCCCCCCCCCCC
21.3930278072
53PhosphorylationGVDAKDTSATSQSVN
CCCCCCCCCCCCCCC
39.4223401153
53 (in isoform 2)Phosphorylation-39.4222468782
54UbiquitinationVDAKDTSATSQSVNG
CCCCCCCCCCCCCCC
17.2322817900
54 (in isoform 2)Ubiquitination-17.2321906983
55PhosphorylationDAKDTSATSQSVNGS
CCCCCCCCCCCCCCC
27.3730278072
56PhosphorylationAKDTSATSQSVNGSP
CCCCCCCCCCCCCCC
21.8523401153
58PhosphorylationDTSATSQSVNGSPQA
CCCCCCCCCCCCCCC
19.8125159151
62PhosphorylationTSQSVNGSPQAEQPS
CCCCCCCCCCCCCCC
14.5019664994
68UbiquitinationGSPQAEQPSLESTSK
CCCCCCCCCCCCCCH
32.1829967540
69PhosphorylationSPQAEQPSLESTSKE
CCCCCCCCCCCCCHH
44.4530266825
72PhosphorylationAEQPSLESTSKEAFF
CCCCCCCCCCHHHHH
43.1823403867
72UbiquitinationAEQPSLESTSKEAFF
CCCCCCCCCCHHHHH
43.1829967540
73PhosphorylationEQPSLESTSKEAFFS
CCCCCCCCCHHHHHH
34.1523403867
74PhosphorylationQPSLESTSKEAFFSR
CCCCCCCCHHHHHHH
37.4723403867
75UbiquitinationPSLESTSKEAFFSRV
CCCCCCCHHHHHHHH
53.8221906983
75 (in isoform 1)Ubiquitination-53.8221906983
75 (in isoform 3)Ubiquitination-53.8221906983
84PhosphorylationAFFSRVETFSSLKWA
HHHHHHHHHHCCCCC
26.4329255136
86PhosphorylationFSRVETFSSLKWAGK
HHHHHHHHCCCCCCC
42.0329255136
87PhosphorylationSRVETFSSLKWAGKP
HHHHHHHCCCCCCCC
29.7629255136
89UbiquitinationVETFSSLKWAGKPFE
HHHHHCCCCCCCCCC
36.6229967540
93UbiquitinationSSLKWAGKPFELSPL
HCCCCCCCCCCCCCE
38.4929967540
98PhosphorylationAGKPFELSPLVCAKY
CCCCCCCCCEEHHHH
14.6927050516
105PhosphorylationSPLVCAKYGWVTVEC
CCEEHHHHCCEEEEE
9.5523898821
109PhosphorylationCAKYGWVTVECDMLK
HHHHCCEEEEECEEE
12.2223898821
125UbiquitinationSSCQAFLCASLQPAF
CCCCHHHHHHCCCCC
1.6329967540
133UbiquitinationASLQPAFDFDRYKQR
HHCCCCCCHHHHHHH
46.7933845483
137PhosphorylationPAFDFDRYKQRCAEL
CCCCHHHHHHHHHHH
17.2012748172
146UbiquitinationQRCAELKKALCTAHE
HHHHHHHHHHHHHHH
60.2529967540
154UbiquitinationALCTAHEKFCFWPDS
HHHHHHHHHCCCCCC
37.2533845483
161PhosphorylationKFCFWPDSPSPDRFG
HHCCCCCCCCCCCCC
24.1725159151
163PhosphorylationCFWPDSPSPDRFGML
CCCCCCCCCCCCCCC
43.3025159151
175UbiquitinationGMLPLDEPAILVSEF
CCCCCCCCHHHHHHH
25.0224816145
198PhosphorylationHLDLQLPSLRPEDLK
CCCCCCCCCCHHHHH
45.6724719451
219UbiquitinationDKISLLLHLLEDELD
HHHHHHHHHHHHHHC
28.4724816145
253UbiquitinationVTACILSVCGWACSS
HHHHHHHHHHHHHHC
2.9124816145
276UbiquitinationLITCSQCMRKVGLWG
HHHHHHHHHHHCCCC
3.4424816145
278PhosphorylationTCSQCMRKVGLWGFQ
HHHHHHHHHCCCCHH
17.4832142685
292PhosphorylationQQIESSMTDLDASFG
HHHHHHCCHHHHHCC
35.0432142685
297PhosphorylationSMTDLDASFGLTSSP
HCCHHHHHCCCCCCC
21.3624275569
300PhosphorylationDLDASFGLTSSPIPG
HHHHHCCCCCCCCCC
3.8532142685
300UbiquitinationDLDASFGLTSSPIPG
HHHHHCCCCCCCCCC
3.8524816145
301PhosphorylationLDASFGLTSSPIPGL
HHHHCCCCCCCCCCC
27.7725850435
302PhosphorylationDASFGLTSSPIPGLE
HHHCCCCCCCCCCCC
38.8826074081
303PhosphorylationASFGLTSSPIPGLEG
HHCCCCCCCCCCCCC
22.9326074081
314PhosphorylationGLEGRPERLPLVPES
CCCCCCCCCCCCCCC
44.2632142685
317UbiquitinationGRPERLPLVPESPRR
CCCCCCCCCCCCCCC
13.7022817900
320UbiquitinationERLPLVPESPRRMMT
CCCCCCCCCCCCCCC
66.9322817900
321PhosphorylationRLPLVPESPRRMMTR
CCCCCCCCCCCCCCC
20.0319664994
322UbiquitinationLPLVPESPRRMMTRS
CCCCCCCCCCCCCCC
26.6624816145
323PhosphorylationPLVPESPRRMMTRSQ
CCCCCCCCCCCCCCC
48.7032142685
329PhosphorylationPRRMMTRSQDATFSP
CCCCCCCCCCCCCCC
24.2023927012
333PhosphorylationMTRSQDATFSPGSEQ
CCCCCCCCCCCCCHH
32.7025159151
335PhosphorylationRSQDATFSPGSEQAE
CCCCCCCCCCCHHHH
24.8119664994
338PhosphorylationDATFSPGSEQAEKSP
CCCCCCCCHHHHCCC
29.8929255136
343UbiquitinationPGSEQAEKSPGPIVS
CCCHHHHCCCCCCEE
66.0324816145
344PhosphorylationGSEQAEKSPGPIVSR
CCHHHHCCCCCCEEC
26.9629255136
350PhosphorylationKSPGPIVSRTRSWDS
CCCCCCEECCCCCCC
28.7522167270
352PhosphorylationPGPIVSRTRSWDSSS
CCCCEECCCCCCCCC
22.8823927012
354PhosphorylationPIVSRTRSWDSSSPV
CCEECCCCCCCCCCC
34.3220201521
357PhosphorylationSRTRSWDSSSPVDRP
ECCCCCCCCCCCCCC
26.8522167270
358PhosphorylationRTRSWDSSSPVDRPE
CCCCCCCCCCCCCCC
35.8722167270
359PhosphorylationTRSWDSSSPVDRPEP
CCCCCCCCCCCCCCC
32.6622167270
361UbiquitinationSWDSSSPVDRPEPEA
CCCCCCCCCCCCCCC
12.0122817900
363MethylationDSSSPVDRPEPEAAS
CCCCCCCCCCCCCCC
37.40115485017
364UbiquitinationSSSPVDRPEPEAASP
CCCCCCCCCCCCCCC
57.9622817900
366PhosphorylationSPVDRPEPEAASPTT
CCCCCCCCCCCCCCC
38.9332645325
367UbiquitinationPVDRPEPEAASPTTR
CCCCCCCCCCCCCCC
56.0329967540
370PhosphorylationRPEPEAASPTTRTRP
CCCCCCCCCCCCCCC
29.8119664994
372PhosphorylationEPEAASPTTRTRPVT
CCCCCCCCCCCCCCC
26.8122167270
373PhosphorylationPEAASPTTRTRPVTR
CCCCCCCCCCCCCCC
33.1722167270
374PhosphorylationEAASPTTRTRPVTRS
CCCCCCCCCCCCCCC
31.0832142685
375PhosphorylationAASPTTRTRPVTRSM
CCCCCCCCCCCCCCC
36.9126074081
379PhosphorylationTTRTRPVTRSMGTGD
CCCCCCCCCCCCCCC
21.5126074081
381PhosphorylationRTRPVTRSMGTGDTP
CCCCCCCCCCCCCCC
16.5229255136
384PhosphorylationPVTRSMGTGDTPGLE
CCCCCCCCCCCCCCC
24.2029255136
387PhosphorylationRSMGTGDTPGLEVPS
CCCCCCCCCCCCCCC
22.1729255136
388PhosphorylationSMGTGDTPGLEVPSS
CCCCCCCCCCCCCCC
50.5433259812
394PhosphorylationTPGLEVPSSPLRKAK
CCCCCCCCCHHHHHH
50.1729255136
395PhosphorylationPGLEVPSSPLRKAKR
CCCCCCCCHHHHHHH
23.1429255136
395UbiquitinationPGLEVPSSPLRKAKR
CCCCCCCCHHHHHHH
23.1422817900
398UbiquitinationEVPSSPLRKAKRARL
CCCCCHHHHHHHHHH
40.0322817900
407PhosphorylationAKRARLCSSSSSDTS
HHHHHHCCCCCCCCC
37.5429255136
408PhosphorylationKRARLCSSSSSDTSS
HHHHHCCCCCCCCCC
32.9927273156
409PhosphorylationRARLCSSSSSDTSSR
HHHHCCCCCCCCCCC
19.9829255136
410PhosphorylationARLCSSSSSDTSSRS
HHHCCCCCCCCCCCC
33.8927273156
411PhosphorylationRLCSSSSSDTSSRSF
HHCCCCCCCCCCCCC
47.0227273156
413PhosphorylationCSSSSSDTSSRSFFD
CCCCCCCCCCCCCCC
30.4629255136
414PhosphorylationSSSSSDTSSRSFFDP
CCCCCCCCCCCCCCC
28.8327273156
414UbiquitinationSSSSSDTSSRSFFDP
CCCCCCCCCCCCCCC
28.8322817900
414 (in isoform 3)Ubiquitination-28.8321906983
415PhosphorylationSSSSDTSSRSFFDPT
CCCCCCCCCCCCCCC
33.7529255136
417PhosphorylationSSDTSSRSFFDPTSQ
CCCCCCCCCCCCCCC
32.0127273156
417UbiquitinationSSDTSSRSFFDPTSQ
CCCCCCCCCCCCCCC
32.0122817900
418UbiquitinationSDTSSRSFFDPTSQH
CCCCCCCCCCCCCCC
8.6022817900
421UbiquitinationSSRSFFDPTSQHRDW
CCCCCCCCCCCCCCC
28.8822817900
438UbiquitinationWVNITLGKESRENGG
EEEEEECHHHHHCCC
56.4829967540
442UbiquitinationTLGKESRENGGTEPD
EECHHHHHCCCCCCC
70.3022817900
445UbiquitinationKESRENGGTEPDASA
HHHHHCCCCCCCCCC
38.1922817900
464UbiquitinationGWKAVLTILLAHKQS
HHHHHHHHHHHHHCC
2.3122817900
464 (in isoform 2)Ubiquitination-2.3121906983
467UbiquitinationAVLTILLAHKQSSQP
HHHHHHHHHHCCCCC
12.3722817900
471PhosphorylationILLAHKQSSQPAETD
HHHHHHCCCCCCCCC
35.4320068231
472PhosphorylationLLAHKQSSQPAETDS
HHHHHCCCCCCCCCC
37.3820068231
477PhosphorylationQSSQPAETDSMSLSE
CCCCCCCCCCCCHHH
35.1720068231
479PhosphorylationSQPAETDSMSLSEKS
CCCCCCCCCCHHHHH
20.0721815630
480SulfoxidationQPAETDSMSLSEKSR
CCCCCCCCCHHHHHH
5.3421406390
481PhosphorylationPAETDSMSLSEKSRK
CCCCCCCCHHHHHHH
32.4725159151
483PhosphorylationETDSMSLSEKSRKVF
CCCCCCHHHHHHHHH
35.3525159151
485UbiquitinationDSMSLSEKSRKVFRI
CCCCHHHHHHHHHHH
52.7822817900
485 (in isoform 1)Ubiquitination-52.7821906983
486PhosphorylationSMSLSEKSRKVFRIF
CCCHHHHHHHHHHHH
33.0320044836
488UbiquitinationSLSEKSRKVFRIFRQ
CHHHHHHHHHHHHHH
53.4622817900

Upstream regulatory proteins (kinases for phosphorylation sites, E3 ubiquitin ligases of ubiquitination sites, ...)
Modified Location Modified Residue Modification Type of Upstream Proteins Gene Name of Upstream Proteins UniProt AC of Upstream Proteins Sources
84TPhosphorylationKinaseCHEK1O14757
GPS
105YPhosphorylationKinaseALKQ9UM73
PhosphoELM
137YPhosphorylationKinaseALKQ9UM73
PhosphoELM
354SPhosphorylationKinaseALKQ9UM73
GPS
395SPhosphorylationKinaseCDK1P06493
PSP
-KUbiquitinationE3 ubiquitin ligaseFZR1Q9UM11
PMID:22205987

Functions of PTM Sites
Modified Location Modified Residue Modification Function Reference
354SPhosphorylation

12748172

Disease-associated PTM Sites based on SAP

* Distance = the distance between SAP position and PTM sites.

Modified Location Modification Variant Position
(Distance <= 10)
Residue Change SAP Related Disease Reference

Oops, there are no SNP-PTM records of NIPA_HUMAN !!

Protein-Protein Interaction
Interacting Protein Gene Name Interaction Type PPI Reference Domain-Domain Interactions
CCNB1_HUMANCCNB1physical
17389604
SKP1_HUMANSKP1physical
17389604
CUL1_HUMANCUL1physical
17389604
RBX1_HUMANRBX1physical
16009132
CUL1_HUMANCUL1physical
16009132
SKP1_HUMANSKP1physical
16009132
CCNB1_HUMANCCNB1physical
16009132
SKP1_HUMANSKP1physical
22205987
A4_HUMANAPPphysical
21832049
EHD4_HUMANEHD4physical
22863883
TF3C4_HUMANGTF3C4physical
22863883
FZR1_HUMANFZR1physical
22205987
CUL1_MOUSECul1physical
22955283
SKP1_HUMANSKP1physical
26474281
CCNB1_HUMANCCNB1physical
26474281
PLK1_HUMANPLK1physical
28514442
TPR_HUMANTPRphysical
28514442
SRBD1_HUMANSRBD1physical
28514442
SALL2_HUMANSALL2physical
28514442

Drug and Disease Associations
Kegg Disease
There are no disease associations of PTM sites.
OMIM Disease
There are no disease associations of PTM sites.
Kegg Drug
There are no disease associations of PTM sites.
DrugBank
There are no disease associations of PTM sites.
Regulatory Network of NIPA_HUMAN

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Related Literatures of Post-Translational Modification
Acetylation
ReferencePubMed
"Lys-N and trypsin cover complementary parts of the phosphoproteome ina refined SCX-based approach.";
Gauci S., Helbig A.O., Slijper M., Krijgsveld J., Heck A.J.,Mohammed S.;
Anal. Chem. 81:4493-4501(2009).
Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT ALA-2, PHOSPHORYLATION [LARGESCALE ANALYSIS] AT SER-58; SER-62; SER-321; SER-335; SER-338; SER-344;THR-387 AND SER-395, AND MASS SPECTROMETRY.
Phosphorylation
ReferencePubMed
"Quantitative phosphoproteomic analysis of T cell receptor signalingreveals system-wide modulation of protein-protein interactions.";
Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K.,Rodionov V., Han D.K.;
Sci. Signal. 2:RA46-RA46(2009).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-58; SER-62; SER-321;SER-335; SER-338; SER-344; SER-354; SER-359; SER-370; THR-387 ANDSER-395, AND MASS SPECTROMETRY.
"Large-scale proteomics analysis of the human kinome.";
Oppermann F.S., Gnad F., Olsen J.V., Hornberger R., Greff Z., Keri G.,Mann M., Daub H.;
Mol. Cell. Proteomics 8:1751-1764(2009).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-338, AND MASSSPECTROMETRY.
"Lys-N and trypsin cover complementary parts of the phosphoproteome ina refined SCX-based approach.";
Gauci S., Helbig A.O., Slijper M., Krijgsveld J., Heck A.J.,Mohammed S.;
Anal. Chem. 81:4493-4501(2009).
Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT ALA-2, PHOSPHORYLATION [LARGESCALE ANALYSIS] AT SER-58; SER-62; SER-321; SER-335; SER-338; SER-344;THR-387 AND SER-395, AND MASS SPECTROMETRY.
"A quantitative atlas of mitotic phosphorylation.";
Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E.,Elledge S.J., Gygi S.P.;
Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-24; THR-28; SER-321;THR-333; SER-335; SER-338; SER-344; SER-354; SER-357; SER-370;THR-384; THR-387; SER-394 AND SER-395, AND MASS SPECTROMETRY.
"Kinase-selective enrichment enables quantitative phosphoproteomics ofthe kinome across the cell cycle.";
Daub H., Olsen J.V., Bairlein M., Gnad F., Oppermann F.S., Korner R.,Greff Z., Keri G., Stemmann O., Mann M.;
Mol. Cell 31:438-448(2008).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-321 AND SER-395, ANDMASS SPECTROMETRY.
"Combining protein-based IMAC, peptide-based IMAC, and MudPIT forefficient phosphoproteomic analysis.";
Cantin G.T., Yi W., Lu B., Park S.K., Xu T., Lee J.-D.,Yates J.R. III;
J. Proteome Res. 7:1346-1351(2008).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-321 AND SER-395, ANDMASS SPECTROMETRY.
"Automated phosphoproteome analysis for cultured cancer cells by two-dimensional nanoLC-MS using a calcined titania/C18 biphasic column.";
Imami K., Sugiyama N., Kyono Y., Tomita M., Ishihama Y.;
Anal. Sci. 24:161-166(2008).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-24 AND THR-84, AND MASSSPECTROMETRY.
"Evaluation of the low-specificity protease elastase for large-scalephosphoproteome analysis.";
Wang B., Malik R., Nigg E.A., Korner R.;
Anal. Chem. 80:9526-9533(2008).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-370, AND MASSSPECTROMETRY.
"A probability-based approach for high-throughput proteinphosphorylation analysis and site localization.";
Beausoleil S.A., Villen J., Gerber S.A., Rush J., Gygi S.P.;
Nat. Biotechnol. 24:1285-1292(2006).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-24; THR-28 AND SER-321,AND MASS SPECTROMETRY.
"Global, in vivo, and site-specific phosphorylation dynamics insignaling networks.";
Olsen J.V., Blagoev B., Gnad F., Macek B., Kumar C., Mortensen P.,Mann M.;
Cell 127:635-648(2006).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-24; THR-28; SER-321 ANDSER-354, AND MASS SPECTROMETRY.
"Identification and characterization of a nuclear interacting partnerof anaplastic lymphoma kinase (NIPA).";
Ouyang T., Bai R.-Y., Bassermann F., von Klitzing C., Klumpen S.,Miething C., Morris S.W., Peschel C., Duyster J.;
J. Biol. Chem. 278:30028-30036(2003).
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), SUBCELLULAR LOCATION, TISSUESPECIFICITY, NUCLEAR LOCALIZATION SIGNAL, INTERACTION WITH NPM-ALKFUSION PROTEIN, PHOSPHORYLATION AT SER-354, AND MUTAGENESIS OFTYR-105; TYR-137; SER-354; LYS-399 AND 398-ARG--LYS-401.

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