KDM3A_HUMAN - dbPTM
KDM3A_HUMAN - PTM Information in dbPTM
Basic Information of Protein
UniProt ID KDM3A_HUMAN
UniProt AC Q9Y4C1
Protein Name Lysine-specific demethylase 3A
Gene Name KDM3A
Organism Homo sapiens (Human).
Sequence Length 1321
Subcellular Localization Cytoplasm. Nucleus. Nuclear in round spermatids. When spermatids start to elongate, localizes to the cytoplasm where it forms distinct foci which disappear in mature spermatozoa (By similarity)..
Protein Description Histone demethylase that specifically demethylates 'Lys-9' of histone H3, thereby playing a central role in histone code. Preferentially demethylates mono- and dimethylated H3 'Lys-9' residue, with a preference for dimethylated residue, while it has weak or no activity on trimethylated H3 'Lys-9'. Demethylation of Lys residue generates formaldehyde and succinate. Involved in hormone-dependent transcriptional activation, by participating in recruitment to androgen-receptor target genes, resulting in H3 'Lys-9' demethylation and transcriptional activation. Involved in spermatogenesis by regulating expression of target genes such as PRM1 and TNP1 which are required for packaging and condensation of sperm chromatin. Involved in obesity resistance through regulation of metabolic genes such as PPARA and UCP1..
Protein Sequence MVLTLGESWPVLVGRRFLSLSAADGSDGSHDSWDVERVAEWPWLSGTIRAVSHTDVTKKDLKVCVEFDGESWRKRRWIEVYSLLRRAFLVEHNLVLAERKSPEISERIVQWPAITYKPLLDKAGLGSITSVRFLGDQQRVFLSKDLLKPIQDVNSLRLSLTDNQIVSKEFQALIVKHLDESHLLKGDKNLVGSEVKIYSLDPSTQWFSATVINGNPASKTLQVNCEEIPALKIVDPSLIHVEVVHDNLVTCGNSARIGAVKRKSSENNGTLVSKQAKSCSEASPSMCPVQSVPTTVFKEILLGCTAATPPSKDPRQQSTPQAANSPPNLGAKIPQGCHKQSLPEEISSCLNTKSEALRTKPDVCKAGLLSKSSQIGTGDLKILTEPKGSCTQPKTNTDQENRLESVPQALTGLPKECLPTKASSKAELEIANPPELQKHLEHAPSPSDVSNAPEVKAGVNSDSPNNCSGKKVEPSALACRSQNLKESSVKVDNESCCSRSNNKIQNAPSRKSVLTDPAKLKKLQQSGEAFVQDDSCVNIVAQLPKCRECRLDSLRKDKEQQKDSPVFCRFFHFRRLQFNKHGVLRVEGFLTPNKYDNEAIGLWLPLTKNVVGIDLDTAKYILANIGDHFCQMVISEKEAMSTIEPHRQVAWKRAVKGVREMCDVCDTTIFNLHWVCPRCGFGVCVDCYRMKRKNCQQGAAYKTFSWLKCVKSQIHEPENLMPTQIIPGKALYDVGDIVHSVRAKWGIKANCPCSNRQFKLFSKPASKEDLKQTSLAGEKPTLGAVLQQNPSVLEPAAVGGEAASKPAGSMKPACPASTSPLNWLADLTSGNVNKENKEKQPTMPILKNEIKCLPPLPPLSKSSTVLHTFNSTILTPVSNNNSGFLRNLLNSSTGKTENGLKNTPKILDDIFASLVQNKTTSDLSKRPQGLTIKPSILGFDTPHYWLCDNRLLCLQDPNNKSNWNVFRECWKQGQPVMVSGVHHKLNSELWKPESFRKEFGEQEVDLVNCRTNEIITGATVGDFWDGFEDVPNRLKNEKEPMVLKLKDWPPGEDFRDMMPSRFDDLMANIPLPEYTRRDGKLNLASRLPNYFVRPDLGPKMYNAYGLITPEDRKYGTTNLHLDVSDAANVMVYVGIPKGQCEQEEEVLKTIQDGDSDELTIKRFIEGKEKPGALWHIYAAKDTEKIREFLKKVSEEQGQENPADHDPIHDQSWYLDRSLRKRLHQEYGVQGWAIVQFLGDVVFIPAGAPHQVHNLYSCIKVAEDFVSPEHVKHCFWLTQEFRYLSQTHTNHEDKLQVKNVIYHAVKDAVAMLKASESSFGKP
Overview of Protein Modification Sites with Functional and Structural Information
Experimental Post-Translational Modification Sites

* ASA = Accessible Surface Area

Locations Modification Substrate Peptides
&
Secondary Structure
ASA (%) Reference Orthologous
Protein Cluster
4Phosphorylation----MVLTLGESWPV
----CCEECCCCCHH
37.5924043423
8PhosphorylationMVLTLGESWPVLVGR
CCEECCCCCHHHEEC
34.5828450419
31UbiquitinationDGSDGSHDSWDVERV
CCCCCCCCCCCHHHH
53.7922817900
32PhosphorylationGSDGSHDSWDVERVA
CCCCCCCCCCHHHHH
21.5430576142
33UbiquitinationSDGSHDSWDVERVAE
CCCCCCCCCHHHHHC
21.5222817900
45PhosphorylationVAEWPWLSGTIRAVS
HHCCCCCCCEEEEEE
29.9830576142
52PhosphorylationSGTIRAVSHTDVTKK
CCEEEEEECCCCCHH
21.4930576142
71PhosphorylationCVEFDGESWRKRRWI
EEEECCHHHHHHHHH
37.4030108239
117UbiquitinationQWPAITYKPLLDKAG
CCCCCCCHHCCCCCC
22.12-
127PhosphorylationLDKAGLGSITSVRFL
CCCCCCCCEEEEEEC
27.9527174698
129PhosphorylationKAGLGSITSVRFLGD
CCCCCCEEEEEECCC
23.9027174698
130PhosphorylationAGLGSITSVRFLGDQ
CCCCCEEEEEECCCH
15.0427174698
144UbiquitinationQQRVFLSKDLLKPIQ
HHEEEEEHHHCCCCC
55.32-
148UbiquitinationFLSKDLLKPIQDVNS
EEEHHHCCCCCCHHC
47.5829967540
168UbiquitinationTDNQIVSKEFQALIV
CCCCHHCHHHHHHHH
52.21-
185UbiquitinationLDESHLLKGDKNLVG
CCHHHCCCCCCCCCC
72.0029967540
187UbiquitinationESHLLKGDKNLVGSE
HHHCCCCCCCCCCCE
34.7722817900
188UbiquitinationSHLLKGDKNLVGSEV
HHCCCCCCCCCCCEE
61.9329967540
191UbiquitinationLKGDKNLVGSEVKIY
CCCCCCCCCCEEEEE
12.7021890473
198PhosphorylationVGSEVKIYSLDPSTQ
CCCEEEEEEECCCCC
9.4729978859
199PhosphorylationGSEVKIYSLDPSTQW
CCEEEEEEECCCCCE
29.7529978859
203PhosphorylationKIYSLDPSTQWFSAT
EEEEECCCCCEEEEE
32.6629978859
204PhosphorylationIYSLDPSTQWFSATV
EEEECCCCCEEEEEE
34.9029978859
208PhosphorylationDPSTQWFSATVINGN
CCCCCEEEEEEECCC
21.7729978859
210PhosphorylationSTQWFSATVINGNPA
CCCEEEEEEECCCCC
22.2629978859
218PhosphorylationVINGNPASKTLQVNC
EECCCCCCCEEEECH
27.6829978859
220PhosphorylationNGNPASKTLQVNCEE
CCCCCCCEEEECHHC
21.6729978859
235UbiquitinationIPALKIVDPSLIHVE
CCCEEECCHHHCEEE
30.4622817900
241UbiquitinationVDPSLIHVEVVHDNL
CCHHHCEEEEEECCE
4.7822817900
245UbiquitinationLIHVEVVHDNLVTCG
HCEEEEEECCEEECC
24.3421890473
258UbiquitinationCGNSARIGAVKRKSS
CCCCCEEEEEEECCC
20.8222817900
264PhosphorylationIGAVKRKSSENNGTL
EEEEEECCCCCCCCC
47.0925159151
265PhosphorylationGAVKRKSSENNGTLV
EEEEECCCCCCCCCC
47.5925159151
270PhosphorylationKSSENNGTLVSKQAK
CCCCCCCCCCCHHCC
26.5526055452
273PhosphorylationENNGTLVSKQAKSCS
CCCCCCCCHHCCCCC
23.3529449344
274UbiquitinationNNGTLVSKQAKSCSE
CCCCCCCHHCCCCCC
46.9632015554
280PhosphorylationSKQAKSCSEASPSMC
CHHCCCCCCCCCCCC
43.2025627689
283PhosphorylationAKSCSEASPSMCPVQ
CCCCCCCCCCCCCCC
17.2930576142
285PhosphorylationSCSEASPSMCPVQSV
CCCCCCCCCCCCCCC
30.4428348404
305PhosphorylationKEILLGCTAATPPSK
HHHHHCCCCCCCCCC
19.9628555341
308PhosphorylationLLGCTAATPPSKDPR
HHCCCCCCCCCCCHH
33.0118669648
311PhosphorylationCTAATPPSKDPRQQS
CCCCCCCCCCHHHCC
51.3926074081
318PhosphorylationSKDPRQQSTPQAANS
CCCHHHCCCCCHHCC
33.4429255136
319PhosphorylationKDPRQQSTPQAANSP
CCHHHCCCCCHHCCC
18.3229255136
325PhosphorylationSTPQAANSPPNLGAK
CCCCHHCCCCCCCCC
36.6930266825
352PhosphorylationEISSCLNTKSEALRT
HHHHHHHCCCHHHHC
24.0122210691
353UbiquitinationISSCLNTKSEALRTK
HHHHHHCCCHHHHCC
45.2729967540
370PhosphorylationVCKAGLLSKSSQIGT
HHHHHHCCCCCCCCC
35.2224719451
371AcetylationCKAGLLSKSSQIGTG
HHHHHCCCCCCCCCC
54.8418526227
371UbiquitinationCKAGLLSKSSQIGTG
HHHHHCCCCCCCCCC
54.8429967540
372PhosphorylationKAGLLSKSSQIGTGD
HHHHCCCCCCCCCCC
24.8929978859
373PhosphorylationAGLLSKSSQIGTGDL
HHHCCCCCCCCCCCC
29.5629978859
377PhosphorylationSKSSQIGTGDLKILT
CCCCCCCCCCCEEEC
29.2029978859
381AcetylationQIGTGDLKILTEPKG
CCCCCCCEEECCCCC
40.1718526235
381UbiquitinationQIGTGDLKILTEPKG
CCCCCCCEEECCCCC
40.1729967540
387UbiquitinationLKILTEPKGSCTQPK
CEEECCCCCCCCCCC
58.1729967540
405PhosphorylationDQENRLESVPQALTG
CCHHHHHHHHHHHHC
43.63-
406UbiquitinationQENRLESVPQALTGL
CHHHHHHHHHHHHCC
2.7322817900
408UbiquitinationNRLESVPQALTGLPK
HHHHHHHHHHHCCCH
47.0122817900
421AcetylationPKECLPTKASSKAEL
CHHHCCCCCCCCHHH
44.3125953088
424PhosphorylationCLPTKASSKAELEIA
HCCCCCCCCHHHEEC
40.52-
438UbiquitinationANPPELQKHLEHAPS
CCCHHHHHHHHCCCC
63.8829967540
445PhosphorylationKHLEHAPSPSDVSNA
HHHHCCCCHHHHCCC
37.5129255136
447PhosphorylationLEHAPSPSDVSNAPE
HHCCCCHHHHCCCCH
55.7929255136
450PhosphorylationAPSPSDVSNAPEVKA
CCCHHHHCCCCHHHC
32.0623684312
461PhosphorylationEVKAGVNSDSPNNCS
HHHCCCCCCCCCCCC
36.7429396449
463PhosphorylationKAGVNSDSPNNCSGK
HCCCCCCCCCCCCCC
29.3723401153
468PhosphorylationSDSPNNCSGKKVEPS
CCCCCCCCCCCCCHH
56.6322199227
470AcetylationSPNNCSGKKVEPSAL
CCCCCCCCCCCHHHH
37.0325953088
475PhosphorylationSGKKVEPSALACRSQ
CCCCCCHHHHHHHCC
23.5526074081
481PhosphorylationPSALACRSQNLKESS
HHHHHHHCCCCCCCC
24.2526074081
495PhosphorylationSVKVDNESCCSRSNN
CEEECCHHHHCCCCC
27.03-
498PhosphorylationVDNESCCSRSNNKIQ
ECCHHHHCCCCCCCC
42.97-
501UbiquitinationESCCSRSNNKIQNAP
HHHHCCCCCCCCCCC
53.3422817900
503UbiquitinationCCSRSNNKIQNAPSR
HHCCCCCCCCCCCCC
50.3329967540
507UbiquitinationSNNKIQNAPSRKSVL
CCCCCCCCCCCCCCC
6.2523503661
509PhosphorylationNKIQNAPSRKSVLTD
CCCCCCCCCCCCCCC
50.3525599653
515PhosphorylationPSRKSVLTDPAKLKK
CCCCCCCCCHHHHHH
37.4728787133
553PhosphorylationCRECRLDSLRKDKEQ
HHHCCCHHHHCCHHH
34.3726091039
558AcetylationLDSLRKDKEQQKDSP
CHHHHCCHHHHCCCC
61.537338493
562UbiquitinationRKDKEQQKDSPVFCR
HCCHHHHCCCCCHHH
60.9222817900
566UbiquitinationEQQKDSPVFCRFFHF
HHHCCCCCHHHHHEE
9.0621890473
595PhosphorylationGFLTPNKYDNEAIGL
EEECCCCCCCCCHHH
30.5517053785
610UbiquitinationWLPLTKNVVGIDLDT
EEECCCCEECEEHHH
4.4322817900
616UbiquitinationNVVGIDLDTAKYILA
CEECEEHHHHHHHHH
40.6522817900
620PhosphorylationIDLDTAKYILANIGD
EEHHHHHHHHHHCHH
9.9427251275
620UbiquitinationIDLDTAKYILANIGD
EEHHHHHHHHHHCHH
9.9421890473
633UbiquitinationGDHFCQMVISEKEAM
HHHHHHHHHCHHHHH
1.4722817900
641PhosphorylationISEKEAMSTIEPHRQ
HCHHHHHHCCCHHHH
33.03-
642PhosphorylationSEKEAMSTIEPHRQV
CHHHHHHCCCHHHHH
19.10-
691UbiquitinationCVDCYRMKRKNCQQG
HHHHHHHCCCCCCCC
51.7422817900
693UbiquitinationDCYRMKRKNCQQGAA
HHHHHCCCCCCCCHH
57.4622817900
712PhosphorylationSWLKCVKSQIHEPEN
HHHHHHHHHCCCCCC
17.6124706070
723PhosphorylationEPENLMPTQIIPGKA
CCCCCCCCCCCCCCE
20.5924706070
729UbiquitinationPTQIIPGKALYDVGD
CCCCCCCCEEEEHHH
29.8429967540
740PhosphorylationDVGDIVHSVRAKWGI
EHHHHHHHHHHHHCC
11.4727080861
748UbiquitinationVRAKWGIKANCPCSN
HHHHHCCCCCCCCCC
29.6129967540
762PhosphorylationNRQFKLFSKPASKED
CCEEEEECCCCCHHH
48.4424719451
763UbiquitinationRQFKLFSKPASKEDL
CEEEEECCCCCHHHH
36.9529967540
766PhosphorylationKLFSKPASKEDLKQT
EEECCCCCHHHHHHC
45.1430108239
779UbiquitinationQTSLAGEKPTLGAVL
HCCCCCCCCCHHHHH
42.2429967540
817PhosphorylationMKPACPASTSPLNWL
CCCCCCCCCCCCHHH
17.9822199227
818PhosphorylationKPACPASTSPLNWLA
CCCCCCCCCCCHHHH
36.1522199227
819PhosphorylationPACPASTSPLNWLAD
CCCCCCCCCCHHHHH
25.5422199227
828PhosphorylationLNWLADLTSGNVNKE
CHHHHHHHCCCCCCC
34.8328102081
829PhosphorylationNWLADLTSGNVNKEN
HHHHHHHCCCCCCCC
35.3528102081
839"N6,N6-dimethyllysine"VNKENKEKQPTMPIL
CCCCCCCCCCCCCCH
64.29-
839MethylationVNKENKEKQPTMPIL
CCCCCCCCCCCCCCH
64.29-
839UbiquitinationVNKENKEKQPTMPIL
CCCCCCCCCCCCCCH
64.2929967540
842PhosphorylationENKEKQPTMPILKNE
CCCCCCCCCCCHHCC
32.8430576142
847UbiquitinationQPTMPILKNEIKCLP
CCCCCCHHCCCCCCC
53.9432015554
851UbiquitinationPILKNEIKCLPPLPP
CCHHCCCCCCCCCCC
24.4421906983
875PhosphorylationTFNSTILTPVSNNNS
ECCCEEEEECCCCCC
20.1428555341
876UbiquitinationFNSTILTPVSNNNSG
CCCEEEEECCCCCCH
24.8822817900
882UbiquitinationTPVSNNNSGFLRNLL
EECCCCCCHHHHHHH
32.8023503661
891PhosphorylationFLRNLLNSSTGKTEN
HHHHHHHCCCCCCCC
29.2829396449
892PhosphorylationLRNLLNSSTGKTENG
HHHHHHCCCCCCCCC
39.8525159151
893PhosphorylationRNLLNSSTGKTENGL
HHHHHCCCCCCCCCC
42.3829396449
895AcetylationLLNSSTGKTENGLKN
HHHCCCCCCCCCCCC
53.4019608861
895UbiquitinationLLNSSTGKTENGLKN
HHHCCCCCCCCCCCC
53.4021906983
901UbiquitinationGKTENGLKNTPKILD
CCCCCCCCCCHHHHH
61.2422817900
905UbiquitinationNGLKNTPKILDDIFA
CCCCCCHHHHHHHHH
54.5922817900
918AcetylationFASLVQNKTTSDLSK
HHHHHCCCCCCCHHC
35.777661995
918UbiquitinationFASLVQNKTTSDLSK
HHHHHCCCCCCCHHC
35.7721906983
925UbiquitinationKTTSDLSKRPQGLTI
CCCCCHHCCCCCEEE
75.3329967540
933UbiquitinationRPQGLTIKPSILGFD
CCCCEEECHHHCCCC
27.7232015554
960UbiquitinationCLQDPNNKSNWNVFR
EEECCCCCCCHHHHH
52.37-
971UbiquitinationNVFRECWKQGQPVMV
HHHHHHHHCCCCEEE
57.0929967540
984UbiquitinationMVSGVHHKLNSELWK
EEECCCCCCCCHHCC
34.1929967540
997UbiquitinationWKPESFRKEFGEQEV
CCCHHHHHHHCCCEE
56.2229967540
1046UbiquitinationEPMVLKLKDWPPGED
CCCEEECCCCCCCCC
57.0429967540
1080UbiquitinationEYTRRDGKLNLASRL
CCCCCCCCCCHHHCC
38.1929967540
1090PhosphorylationLASRLPNYFVRPDLG
HHHCCCCCCCCCCCC
11.0822817900
1101PhosphorylationPDLGPKMYNAYGLIT
CCCCCCHHCCCCCCC
11.63-
1104PhosphorylationGPKMYNAYGLITPED
CCCHHCCCCCCCHHH
14.6122817900
1114PhosphorylationITPEDRKYGTTNLHL
CCHHHHCCCCCEEEE
22.16-
1116PhosphorylationPEDRKYGTTNLHLDV
HHHHCCCCCEEEEEH
14.9320860994
1117PhosphorylationEDRKYGTTNLHLDVS
HHHCCCCCEEEEEHH
31.2720860994
1124PhosphorylationTNLHLDVSDAANVMV
CEEEEEHHHCCCEEE
22.6220860994
1148UbiquitinationEQEEEVLKTIQDGDS
CCHHHHHHHHHCCCC
49.0829967540
1155PhosphorylationKTIQDGDSDELTIKR
HHHHCCCCCCEEEHH
38.21-
1161UbiquitinationDSDELTIKRFIEGKE
CCCCEEEHHHHCCCC
35.7022817900
1167UbiquitinationIKRFIEGKEKPGALW
EHHHHCCCCCCCCEE
50.1823503661
1169UbiquitinationRFIEGKEKPGALWHI
HHHCCCCCCCCEEEE
52.84-
1190UbiquitinationEKIREFLKKVSEEQG
HHHHHHHHHHCHHHC
57.3529967540
1266PhosphorylationKVAEDFVSPEHVKHC
HHHHCCCCHHHHHHH
25.2725850435
1271UbiquitinationFVSPEHVKHCFWLTQ
CCCHHHHHHHHHHHH
36.24-
1284PhosphorylationTQEFRYLSQTHTNHE
HHHHHHHHHCCCCCC
24.8930624053
1297UbiquitinationHEDKLQVKNVIYHAV
CCCHHHHHHHHHHHH
32.3229967540
1301PhosphorylationLQVKNVIYHAVKDAV
HHHHHHHHHHHHHHH
4.5721712546
1314PhosphorylationAVAMLKASESSFGKP
HHHHHHHHHHHCCCC
36.1029449344
1316PhosphorylationAMLKASESSFGKP--
HHHHHHHHHCCCC--
28.5929449344
1317PhosphorylationMLKASESSFGKP---
HHHHHHHHCCCC---
33.6929449344
1320UbiquitinationASESSFGKP------
HHHHHCCCC------
45.61-

Upstream regulatory proteins (kinases for phosphorylation sites, E3 ubiquitin ligases of ubiquitination sites, ...)
Modified Location Modified Residue Modification Type of Upstream Proteins Gene Name of Upstream Proteins UniProt AC of Upstream Proteins Sources
265SPhosphorylationKinasePRKACAP17612
GPS
1114YPhosphorylationKinaseTNK2Q07912
GPS

Functions of PTM Sites
Modified Location Modified Residue Modification Function Reference

Oops, there are no descriptions of PTM sites of KDM3A_HUMAN !!

Disease-associated PTM Sites based on SAP

* Distance = the distance between SAP position and PTM sites.

Modified Location Modification Variant Position
(Distance <= 10)
Residue Change SAP Related Disease Reference

Oops, there are no SNP-PTM records of KDM3A_HUMAN !!

Protein-Protein Interaction
Interacting Protein Gene Name Interaction Type PPI Reference Domain-Domain Interactions
ETV2_HUMANETV2physical
16619273
MKL1_HUMANMKL1physical
17991879
MKL2_HUMANMKL2physical
17991879
MYCD_HUMANMYOCDphysical
17991879
H32_HUMANHIST2H3Cphysical
16603237
ANDR_HUMANARphysical
16603237
ACK1_HUMANTNK2physical
25148682
ARFG2_HUMANARFGAP2physical
26344197
ARP19_HUMANARPP19physical
26344197
PUR2_HUMANGARTphysical
26344197
I2BP1_HUMANIRF2BP1physical
26344197
ECM29_HUMANKIAA0368physical
26344197

Drug and Disease Associations
Kegg Disease
There are no disease associations of PTM sites.
OMIM Disease
There are no disease associations of PTM sites.
Kegg Drug
There are no disease associations of PTM sites.
DrugBank
There are no disease associations of PTM sites.
Regulatory Network of KDM3A_HUMAN

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Related Literatures of Post-Translational Modification
Acetylation
ReferencePubMed
"Lysine acetylation targets protein complexes and co-regulates majorcellular functions.";
Choudhary C., Kumar C., Gnad F., Nielsen M.L., Rehman M., Walther T.,Olsen J.V., Mann M.;
Science 325:834-840(2009).
Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT LYS-895, AND MASS SPECTROMETRY.
Phosphorylation
ReferencePubMed
"Quantitative phosphoproteomic analysis of T cell receptor signalingreveals system-wide modulation of protein-protein interactions.";
Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K.,Rodionov V., Han D.K.;
Sci. Signal. 2:RA46-RA46(2009).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-445, AND MASSSPECTROMETRY.

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