dbPTM

CLP1_ARATH - PTM Information in dbPTM

Basic Information of Protein

Overview of Protein Modification Sites with Functional and Structural Information
UniProt ID	CLP1_ARATH
UniProt AC	Q9SR06
Protein Name	Protein CLP1 homolog {ECO:0000255\|HAMAP-Rule:MF_03035}
Gene Name	CLPS3
Organism	Arabidopsis thaliana (Mouse-ear cress).
Sequence Length	444
Subcellular Localization	Nucleus .
Protein Description	Required for endonucleolytic cleavage during polyadenylation-dependent pre-mRNA 3'-end formation (By similarity). Functions in gametophyte, embryo and postembryotic development. [PubMed: 18971429]
Protein Sequence	MAYGGPSMNPPALSGAVPGSANLKQVKLERESELRIEVSEEPLRLRVVNGTAEIFGSELPPEIWRTFPPRMKFAVFTWYGATIEMDGVTETDYTADETPMVSYINVHAILDARRRFAKASTSNDPESSQGPRVIVVGPTDSGKSTLTKMLLSWAAKQGWRPTFVDLDVGQGSITIPGSIAAAPIEMPLDPVEGFPLDMALVYYYGHASPNMNVELYKALVKELAQVLEKQFVGNPESRAAGMVINTMGWIEGIGYELLLHAIDTFNASVVLVLGQEKLFSRLKDVLRSKSNVDVVKLHKSGGVVARVKEVRKRSRNFKIQEYFYGLSKELSPYANTSSFSDLQVFRIGGGPQAPKSALPAGSTSVSNPLRVTPVNIDDRDLLHSVLAVSYAEEPDQIISSNVSGFVYVTEVNVQKKKITYLAPSPGTLPSKLLVAGSLAWLESV

Experimental Post-Translational Modification Sites

* ASA = Accessible Surface Area

Locations	Modification	Substrate Peptides & Secondary Structure	ASA (%)	Reference	Orthologous Protein Cluster
331	Phosphorylation	YGLSKELSPYANTSS HHHCCCCCCCCCCCC		24601666
340	Phosphorylation	YANTSSFSDLQVFRI CCCCCCCCCCEEEEE		24601666

Upstream regulatory proteins (kinases for phosphorylation sites, E3 ubiquitin ligases of ubiquitination sites, ...)

Modified Location	Modified Residue	Modification	Type of Upstream Proteins	Gene Name of Upstream Proteins	UniProt AC of Upstream Proteins	Sources
Oops, there are no upstream regulatory protein records of CLP1_ARATH !!

Functions of PTM Sites

Modified Location	Modified Residue	Modification	Function	Reference
Oops, there are no descriptions of PTM sites of CLP1_ARATH !!

Disease-associated PTM Sites based on SAP

* Distance = the distance between SAP position and PTM sites.

Modified Location	Modification	Variant Position (Distance <= 10)	Residue Change	SAP	Related Disease	Reference
Oops, there are no SNP-PTM records of CLP1_ARATH !!

Protein-Protein Interaction

Interacting Protein	Gene Name	Interaction Type	PPI Reference
PCFS4_ARATH	PCFS4	physical	18298670
CPSF2_ARATH	CPSF100	physical	18971429
FY_ARATH	FY	physical	18971429
CPSF1_ARATH	CPSF160	physical	18971429
CPSF_ARATH	CPSF30	physical	19748916
CLP1_ARATH	CLPS3	physical	19748916
PCFS4_ARATH	PCFS4	physical	19748916
PCFS4_ARATH	PCFS4	physical	18479511
PCFS5_ARATH	AT5G43620	physical	18479511

Drug and Disease Associations

Kegg Drug
DrugBank
There are no disease associations of PTM sites.

Regulatory Network of CLP1_ARATH

Related Literatures of Post-Translational Modification