XPC_HUMAN - dbPTM
XPC_HUMAN - PTM Information in dbPTM
Basic Information of Protein
UniProt ID XPC_HUMAN
UniProt AC Q01831
Protein Name DNA repair protein complementing XP-C cells
Gene Name XPC
Organism Homo sapiens (Human).
Sequence Length 940
Subcellular Localization Nucleus. Cytoplasm. Omnipresent in the nucleus and consistently associates with and dissociates from DNA in the absence of DNA damage. Continuously shuttles between the cytoplasm and the nucleus, which is impeded by the presence of NER lesions.
Protein Description Involved in global genome nucleotide excision repair (GG-NER) by acting as damage sensing and DNA-binding factor component of the XPC complex. Has only a low DNA repair activity by itself which is stimulated by RAD23B and RAD23A. Has a preference to bind DNA containing a short single-stranded segment but not to damaged oligonucleotides. This feature is proposed to be related to a dynamic sensor XPC can rapidly screen duplex DNA for non-hydrogen-bonded bases by forming a transient nucleoprotein intermediate complex which matures into a stable recognition complex through an intrinsic single-stranded DNA-binding activity.; The XPC complex is proposed to represent the first factor bound at the sites of DNA damage and together with other core recognition factors, XPA, RPA and the TFIIH complex, is part of the pre-incision (or initial recognition) complex. The XPC complex recognizes a wide spectrum of damaged DNA characterized by distortions of the DNA helix such as single-stranded loops, mismatched bubbles or single-stranded overhangs. The orientation of XPC complex binding appears to be crucial for inducing a productive NER. XPC complex is proposed to recognize and to interact with unpaired bases on the undamaged DNA strand which is followed by recruitment of the TFIIH complex and subsequent scanning for lesions in the opposite strand in a 5'-to-3' direction by the NER machinery. Cyclobutane pyrimidine dimers (CPDs) which are formed upon UV-induced DNA damage esacpe detection by the XPC complex due to a low degree of structural perurbation. Instead they are detected by the UV-DDB complex which in turn recruits and cooperates with the XPC complex in the respective DNA repair. In vitro, the XPC:RAD23B dimer is sufficient to initiate NER; it preferentially binds to cisplatin and UV-damaged double-stranded DNA and also binds to a variety of chemically and structurally diverse DNA adducts. XPC:RAD23B contacts DNA both 5' and 3' of a cisplatin lesion with a preference for the 5' side. XPC:RAD23B induces a bend in DNA upon binding. XPC:RAD23B stimulates the activity of DNA glycosylases TDG and SMUG1..
Protein Sequence MARKRAAGGEPRGRELRSQKSKAKSKARREEEEEDAFEDEKPPKKSLLSKVSQGKRKRGCSHPGGSADGPAKKKVAKVTVKSENLKVIKDEALSDGDDLRDFPSDLKKAHHLKRGATMNEDSNEEEEESENDWEEVEELSEPVLGDVRESTAFSRSLLPVKPVEIEIETPEQAKTRERSEKIKLEFETYLRRAMKRFNKGVHEDTHKVHLLCLLANGFYRNNICSQPDLHAIGLSIIPARFTRVLPRDVDTYYLSNLVKWFIGTFTVNAELSASEQDNLQTTLERRFAIYSARDDEELVHIFLLILRALQLLTRLVLSLQPIPLKSATAKGKKPSKERLTADPGGSSETSSQVLENHTKPKTSKGTKQEETFAKGTCRPSAKGKRNKGGRKKRSKPSSSEEDEGPGDKQEKATQRRPHGRERRVASRVSYKEESGSDEAGSGSDFELSSGEASDPSDEDSEPGPPKQRKAPAPQRTKAGSKSASRTHRGSHRKDPSLPAASSSSSSSKRGKKMCSDGEKAEKRSIAGIDQWLEVFCEQEEKWVCVDCVHGVVGQPLTCYKYATKPMTYVVGIDSDGWVRDVTQRYDPVWMTVTRKCRVDAEWWAETLRPYQSPFMDREKKEDLEFQAKHMDQPLPTAIGLYKNHPLYALKRHLLKYEAIYPETAAILGYCRGEAVYSRDCVHTLHSRDTWLKKARVVRLGEVPYKMVKGFSNRARKARLAEPQLREENDLGLFGYWQTEEYQPPVAVDGKVPRNEFGNVYLFLPSMMPIGCVQLNLPNLHRVARKLDIDCVQAITGFDFHGGYSHPVTDGYIVCEEFKDVLLTAWENEQAVIERKEKEKKEKRALGNWKLLAKGLLIRERLKRRYGPKSEAAAPHTDAGGGLSSDEEEGTSSQAEAARILAASWPQNREDEEKQKLKGGPKKTKREKKAAASHLFPFEQL
Overview of Protein Modification Sites with Functional and Structural Information
Experimental Post-Translational Modification Sites

* ASA = Accessible Surface Area

Locations Modification Substrate Peptides
&
Secondary Structure
ASA (%) Reference Orthologous
Protein Cluster
41SumoylationEDAFEDEKPPKKSLL
HHHCCCCCCCCHHHH
78.0728112733
44AcetylationFEDEKPPKKSLLSKV
CCCCCCCCHHHHHHH
64.6220167786
45AcetylationEDEKPPKKSLLSKVS
CCCCCCCHHHHHHHH
52.7020167786
46PhosphorylationDEKPPKKSLLSKVSQ
CCCCCCHHHHHHHHC
40.4424719451
50AcetylationPKKSLLSKVSQGKRK
CCHHHHHHHHCCCCC
45.9720167786
50UbiquitinationPKKSLLSKVSQGKRK
CCHHHHHHHHCCCCC
45.97-
58MethylationVSQGKRKRGCSHPGG
HHCCCCCCCCCCCCC
56.22115920121
61PhosphorylationGKRKRGCSHPGGSAD
CCCCCCCCCCCCCCC
35.2225159151
66PhosphorylationGCSHPGGSADGPAKK
CCCCCCCCCCCHHCC
29.1525627689
72AcetylationGSADGPAKKKVAKVT
CCCCCHHCCEEEEEE
57.1525953088
79PhosphorylationKKKVAKVTVKSENLK
CCEEEEEEEECCCEE
22.85-
81SumoylationKVAKVTVKSENLKVI
EEEEEEEECCCEEEE
42.56-
81SumoylationKVAKVTVKSENLKVI
EEEEEEEECCCEEEE
42.5628112733
81UbiquitinationKVAKVTVKSENLKVI
EEEEEEEECCCEEEE
42.56-
81AcetylationKVAKVTVKSENLKVI
EEEEEEEECCCEEEE
42.5625953088
86UbiquitinationTVKSENLKVIKDEAL
EEECCCEEEEEHHHC
54.20-
89SumoylationSENLKVIKDEALSDG
CCCEEEEEHHHCCCC
53.1328112733
94PhosphorylationVIKDEALSDGDDLRD
EEEHHHCCCCCCHHC
46.7429255136
104PhosphorylationDDLRDFPSDLKKAHH
CCHHCCCHHHHHHHH
56.4123927012
117PhosphorylationHHLKRGATMNEDSNE
HHHHCCCCCCCCCCH
24.2917081983
122PhosphorylationGATMNEDSNEEEEES
CCCCCCCCCHHHHHH
39.7122617229
129PhosphorylationSNEEEEESENDWEEV
CCHHHHHHHCCHHHH
45.0022617229
140PhosphorylationWEEVEELSEPVLGDV
HHHHHHHCCCCCCCH
43.0420068231
150PhosphorylationVLGDVRESTAFSRSL
CCCCHHHHCCCCCCC
17.93-
154PhosphorylationVRESTAFSRSLLPVK
HHHHCCCCCCCCCCC
20.63-
156PhosphorylationESTAFSRSLLPVKPV
HHCCCCCCCCCCCCE
32.8121712546
161UbiquitinationSRSLLPVKPVEIEIE
CCCCCCCCCEEEEEE
41.2121890473
161AcetylationSRSLLPVKPVEIEIE
CCCCCCCCCEEEEEE
41.2123236377
161SumoylationSRSLLPVKPVEIEIE
CCCCCCCCCEEEEEE
41.2128112733
169PhosphorylationPVEIEIETPEQAKTR
CEEEEEECHHHHHHH
37.4725159151
174UbiquitinationIETPEQAKTRERSEK
EECHHHHHHHHHHHH
48.0521890473
181UbiquitinationKTRERSEKIKLEFET
HHHHHHHHHHHHHHH
46.52-
183UbiquitinationRERSEKIKLEFETYL
HHHHHHHHHHHHHHH
53.70-
188PhosphorylationKIKLEFETYLRRAMK
HHHHHHHHHHHHHHH
32.9325841592
189PhosphorylationIKLEFETYLRRAMKR
HHHHHHHHHHHHHHH
7.3325841592
291PhosphorylationERRFAIYSARDDEEL
HHHEEEEECCCHHHH
15.6623090842
318PhosphorylationLLTRLVLSLQPIPLK
HHHHHHHHCCCCCCC
19.9228152594
326PhosphorylationLQPIPLKSATAKGKK
CCCCCCCCCCCCCCC
38.2428152594
328PhosphorylationPIPLKSATAKGKKPS
CCCCCCCCCCCCCCC
35.6728152594
335PhosphorylationTAKGKKPSKERLTAD
CCCCCCCCHHCCCCC
56.9023898821
340PhosphorylationKPSKERLTADPGGSS
CCCHHCCCCCCCCCC
34.9223927012
346PhosphorylationLTADPGGSSETSSQV
CCCCCCCCCHHHHHH
30.8023401153
347PhosphorylationTADPGGSSETSSQVL
CCCCCCCCHHHHHHH
48.4423401153
349PhosphorylationDPGGSSETSSQVLEN
CCCCCCHHHHHHHHH
35.3123927012
350PhosphorylationPGGSSETSSQVLENH
CCCCCHHHHHHHHHC
18.0925159151
351PhosphorylationGGSSETSSQVLENHT
CCCCHHHHHHHHHCC
31.5617525332
358PhosphorylationSQVLENHTKPKTSKG
HHHHHHCCCCCCCCC
61.7023927012
359UbiquitinationQVLENHTKPKTSKGT
HHHHHCCCCCCCCCC
36.6521890473
359AcetylationQVLENHTKPKTSKGT
HHHHHCCCCCCCCCC
36.6526051181
361UbiquitinationLENHTKPKTSKGTKQ
HHHCCCCCCCCCCCC
67.97-
367UbiquitinationPKTSKGTKQEETFAK
CCCCCCCCCCCCCCC
65.46-
371O-linked_GlycosylationKGTKQEETFAKGTCR
CCCCCCCCCCCCCCC
28.3030379171
374UbiquitinationKQEETFAKGTCRPSA
CCCCCCCCCCCCCCC
51.03-
374AcetylationKQEETFAKGTCRPSA
CCCCCCCCCCCCCCC
51.0325953088
394PhosphorylationKGGRKKRSKPSSSEE
CCCCCCCCCCCCCCC
58.7723403867
397PhosphorylationRKKRSKPSSSEEDEG
CCCCCCCCCCCCCCC
50.6725159151
398PhosphorylationKKRSKPSSSEEDEGP
CCCCCCCCCCCCCCC
50.7426055452
399PhosphorylationKRSKPSSSEEDEGPG
CCCCCCCCCCCCCCC
49.7126055452
453PhosphorylationELSSGEASDPSDEDS
CCCCCCCCCCCCCCC
45.8324275569
456PhosphorylationSGEASDPSDEDSEPG
CCCCCCCCCCCCCCC
59.6324275569
460PhosphorylationSDPSDEDSEPGPPKQ
CCCCCCCCCCCCCCC
43.5824275569
482PhosphorylationRTKAGSKSASRTHRG
CCCCCCCCCCCCCCC
32.9224719451
484PhosphorylationKAGSKSASRTHRGSH
CCCCCCCCCCCCCCC
44.8124719451
493UbiquitinationTHRGSHRKDPSLPAA
CCCCCCCCCCCCCCC
69.44-
496PhosphorylationGSHRKDPSLPAASSS
CCCCCCCCCCCCCCC
58.0625159151
501PhosphorylationDPSLPAASSSSSSSK
CCCCCCCCCCCCCCC
32.6225627689
502PhosphorylationPSLPAASSSSSSSKR
CCCCCCCCCCCCCCC
29.5225627689
503PhosphorylationSLPAASSSSSSSKRG
CCCCCCCCCCCCCCC
31.5725627689
504PhosphorylationLPAASSSSSSSKRGK
CCCCCCCCCCCCCCC
35.8725627689
505PhosphorylationPAASSSSSSSKRGKK
CCCCCCCCCCCCCCC
40.3525627689
506PhosphorylationAASSSSSSSKRGKKM
CCCCCCCCCCCCCCC
41.6525627689
507PhosphorylationASSSSSSSKRGKKMC
CCCCCCCCCCCCCCC
28.4625627689
508UbiquitinationSSSSSSSKRGKKMCS
CCCCCCCCCCCCCCC
68.09-
515PhosphorylationKRGKKMCSDGEKAEK
CCCCCCCCCCHHHHH
45.1924719451
560UbiquitinationGQPLTCYKYATKPMT
CCCEEEEEECCCCEE
30.47-
567PhosphorylationKYATKPMTYVVGIDS
EECCCCEEEEEEECC
22.9927762562
619UbiquitinationSPFMDREKKEDLEFQ
CCCCCHHHHHHHHHH
63.46-
620UbiquitinationPFMDREKKEDLEFQA
CCCCHHHHHHHHHHH
52.27-
628UbiquitinationEDLEFQAKHMDQPLP
HHHHHHHHHCCCCCC
28.78-
642UbiquitinationPTAIGLYKNHPLYAL
CCHHHHHCCCHHHHH
54.55-
650UbiquitinationNHPLYALKRHLLKYE
CCHHHHHHHHHHHHH
29.60-
655SumoylationALKRHLLKYEAIYPE
HHHHHHHHHHHHCHH
47.61-
655SumoylationALKRHLLKYEAIYPE
HHHHHHHHHHHHCHH
47.61-
656PhosphorylationLKRHLLKYEAIYPET
HHHHHHHHHHHCHHH
15.5721406692
660PhosphorylationLLKYEAIYPETAAIL
HHHHHHHCHHHHHHH
11.3221406692
663PhosphorylationYEAIYPETAAILGYC
HHHHCHHHHHHHHHH
19.5121406692
669PhosphorylationETAAILGYCRGEAVY
HHHHHHHHHCCCEEE
3.8921406692
676PhosphorylationYCRGEAVYSRDCVHT
HHCCCEEECCCCHHH
12.68-
677PhosphorylationCRGEAVYSRDCVHTL
HCCCEEECCCCHHHH
18.29-
693UbiquitinationSRDTWLKKARVVRLG
CCCCHHHHCEEEEEC
38.97-
704PhosphorylationVRLGEVPYKMVKGFS
EEECCCCHHHHCCCC
19.5220068231
705UbiquitinationRLGEVPYKMVKGFSN
EECCCCHHHHCCCCH
31.02-
708UbiquitinationEVPYKMVKGFSNRAR
CCCHHHHCCCCHHHH
51.22-
711PhosphorylationYKMVKGFSNRARKAR
HHHHCCCCHHHHHHH
33.7920068231
711O-linked_GlycosylationYKMVKGFSNRARKAR
HHHHCCCCHHHHHHH
33.7930379171
750UbiquitinationPPVAVDGKVPRNEFG
CCEEECCEECCCCCC
44.6021890473
785UbiquitinationNLHRVARKLDIDCVQ
CHHHHHHHCCCCHHH
40.55-
812UbiquitinationHPVTDGYIVCEEFKD
CCCCCCEEEEHHHHH
3.3221890473
849UbiquitinationKRALGNWKLLAKGLL
HHHHCCHHHHHHHHH
37.3121890473
853UbiquitinationGNWKLLAKGLLIRER
CCHHHHHHHHHHHHH
50.49-
865PhosphorylationRERLKRRYGPKSEAA
HHHHHHHHCCCCCCC
41.6423312004
869PhosphorylationKRRYGPKSEAAAPHT
HHHHCCCCCCCCCCC
35.2822167270
876PhosphorylationSEAAAPHTDAGGGLS
CCCCCCCCCCCCCCC
26.8719664994
883PhosphorylationTDAGGGLSSDEEEGT
CCCCCCCCCCCCCCC
38.7329255136
884PhosphorylationDAGGGLSSDEEEGTS
CCCCCCCCCCCCCCC
54.8329255136
890PhosphorylationSSDEEEGTSSQAEAA
CCCCCCCCCHHHHHH
28.6029255136
891PhosphorylationSDEEEGTSSQAEAAR
CCCCCCCCHHHHHHH
31.1729255136
892PhosphorylationDEEEGTSSQAEAARI
CCCCCCCHHHHHHHH
32.9917525332
903PhosphorylationAARILAASWPQNRED
HHHHHHHHCCCCCCH
33.4125159151
9212-HydroxyisobutyrylationQKLKGGPKKTKREKK
HHHCCCCCCCHHHHH
76.09-
932PhosphorylationREKKAAASHLFPFEQ
HHHHHHHHHCCCHHH
18.9224850871

Upstream regulatory proteins (kinases for phosphorylation sites, E3 ubiquitin ligases of ubiquitination sites, ...)
Modified Location Modified Residue Modification Type of Upstream Proteins Gene Name of Upstream Proteins UniProt AC of Upstream Proteins Sources
94SPhosphorylationKinaseCSNK2A1P68400
GPS
129SPhosphorylationKinaseCK2A1P68400
PSP
-KUbiquitinationE3 ubiquitin ligaseDDB2Q92466
PMID:16527807

Functions of PTM Sites
Modified Location Modified Residue Modification Function Reference

Oops, there are no descriptions of PTM sites of XPC_HUMAN !!

Disease-associated PTM Sites based on SAP

* Distance = the distance between SAP position and PTM sites.

Modified Location Modification Variant Position
(Distance <= 10)
Residue Change SAP Related Disease Reference

Oops, there are no SNP-PTM records of XPC_HUMAN !!

Protein-Protein Interaction
Interacting Protein Gene Name Interaction Type PPI Reference Domain-Domain Interactions
RD23A_HUMANRAD23Aphysical
9164480
CETN2_HUMANCETN2physical
11279143
RD23B_HUMANRAD23Bphysical
11279143
ERCC3_HUMANERCC3physical
10734143
SNF5_HUMANSMARCB1physical
19805520
H2AX_HUMANH2AFXphysical
19805520
DDB1_HUMANDDB1physical
15882621
DDB2_HUMANDDB2physical
15882621
XPA_HUMANXPAphysical
17154534
CETN2_HUMANCETN2physical
17154534
RD23B_HUMANRAD23Bphysical
17154534
RD23A_HUMANRAD23Aphysical
9372924
RD23B_HUMANRAD23Bphysical
9372924
HMGB1_HUMANHMGB1physical
19446504
RD23B_HUMANRAD23Bphysical
10873465
RD23B_HUMANRAD23Bphysical
9164480
MDM2_HUMANMDM2physical
24258024
RD23A_HUMANRAD23Aphysical
24258024
RD23B_HUMANRAD23Bphysical
24258024
UBP7_HUMANUSP7physical
25118285
RD23B_HUMANRAD23Bphysical
22431748
TDG_HUMANTDGphysical
12505994
H2B1O_HUMANHIST1H2BOphysical
28514442
H2B1D_HUMANHIST1H2BDphysical
28514442
H2B1C_HUMANHIST1H2BDphysical
28514442
CETN2_HUMANCETN2physical
28514442
PARP2_HUMANPARP2physical
28514442
CETN3_HUMANCETN3physical
28514442
ABC3C_HUMANAPOBEC3Cphysical
28514442
H2AW_HUMANH2AFY2physical
28514442
SP16H_HUMANSUPT16Hphysical
28514442
PARP1_HUMANPARP1physical
28514442
H2A2B_HUMANHIST2H2ABphysical
28514442
H2AY_HUMANH2AFYphysical
28514442

Drug and Disease Associations
Kegg Disease
There are no disease associations of PTM sites.
OMIM Disease
278720Xeroderma pigmentosum complementation group C (XP-C)
Kegg Drug
There are no disease associations of PTM sites.
DrugBank
There are no disease associations of PTM sites.
Regulatory Network of XPC_HUMAN

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Related Literatures of Post-Translational Modification
Phosphorylation
ReferencePubMed
"Quantitative phosphoproteomic analysis of T cell receptor signalingreveals system-wide modulation of protein-protein interactions.";
Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K.,Rodionov V., Han D.K.;
Sci. Signal. 2:RA46-RA46(2009).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-883 AND SER-884, ANDMASS SPECTROMETRY.
"Large-scale phosphoproteome analysis of human liver tissue byenrichment and fractionation of phosphopeptides with strong anionexchange chromatography.";
Han G., Ye M., Zhou H., Jiang X., Feng S., Jiang X., Tian R., Wan D.,Zou H., Gu J.;
Proteomics 8:1346-1361(2008).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-883 AND SER-884, ANDMASS SPECTROMETRY.
"A quantitative atlas of mitotic phosphorylation.";
Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E.,Elledge S.J., Gygi S.P.;
Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-94; THR-169; SER-883;SER-884 AND SER-891, AND MASS SPECTROMETRY.
"Combining protein-based IMAC, peptide-based IMAC, and MudPIT forefficient phosphoproteomic analysis.";
Cantin G.T., Yi W., Lu B., Park S.K., Xu T., Lee J.-D.,Yates J.R. III;
J. Proteome Res. 7:1346-1351(2008).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-883 AND SER-884, ANDMASS SPECTROMETRY.
"ATM and ATR substrate analysis reveals extensive protein networksresponsive to DNA damage.";
Matsuoka S., Ballif B.A., Smogorzewska A., McDonald E.R. III,Hurov K.E., Luo J., Bakalarski C.E., Zhao Z., Solimini N.,Lerenthal Y., Shiloh Y., Gygi S.P., Elledge S.J.;
Science 316:1160-1166(2007).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-347; SER-351; SER-883;SER-884 AND SER-892, AND MASS SPECTROMETRY.
"Toward a global characterization of the phosphoproteome in prostatecancer cells: identification of phosphoproteins in the LNCaP cellline.";
Giorgianni F., Zhao Y., Desiderio D.M., Beranova-Giorgianni S.;
Electrophoresis 28:2027-2034(2007).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-883 AND SER-884, ANDMASS SPECTROMETRY.
"Global, in vivo, and site-specific phosphorylation dynamics insignaling networks.";
Olsen J.V., Blagoev B., Gnad F., Macek B., Kumar C., Mortensen P.,Mann M.;
Cell 127:635-648(2006).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-94, AND MASSSPECTROMETRY.
"Large-scale characterization of HeLa cell nuclear phosphoproteins.";
Beausoleil S.A., Jedrychowski M., Schwartz D., Elias J.E., Villen J.,Li J., Cohn M.A., Cantley L.C., Gygi S.P.;
Proc. Natl. Acad. Sci. U.S.A. 101:12130-12135(2004).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-883 AND SER-884, ANDMASS SPECTROMETRY.

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