UniProt ID | XPC_HUMAN | |
---|---|---|
UniProt AC | Q01831 | |
Protein Name | DNA repair protein complementing XP-C cells | |
Gene Name | XPC | |
Organism | Homo sapiens (Human). | |
Sequence Length | 940 | |
Subcellular Localization | Nucleus. Cytoplasm. Omnipresent in the nucleus and consistently associates with and dissociates from DNA in the absence of DNA damage. Continuously shuttles between the cytoplasm and the nucleus, which is impeded by the presence of NER lesions. | |
Protein Description | Involved in global genome nucleotide excision repair (GG-NER) by acting as damage sensing and DNA-binding factor component of the XPC complex. Has only a low DNA repair activity by itself which is stimulated by RAD23B and RAD23A. Has a preference to bind DNA containing a short single-stranded segment but not to damaged oligonucleotides. This feature is proposed to be related to a dynamic sensor XPC can rapidly screen duplex DNA for non-hydrogen-bonded bases by forming a transient nucleoprotein intermediate complex which matures into a stable recognition complex through an intrinsic single-stranded DNA-binding activity.; The XPC complex is proposed to represent the first factor bound at the sites of DNA damage and together with other core recognition factors, XPA, RPA and the TFIIH complex, is part of the pre-incision (or initial recognition) complex. The XPC complex recognizes a wide spectrum of damaged DNA characterized by distortions of the DNA helix such as single-stranded loops, mismatched bubbles or single-stranded overhangs. The orientation of XPC complex binding appears to be crucial for inducing a productive NER. XPC complex is proposed to recognize and to interact with unpaired bases on the undamaged DNA strand which is followed by recruitment of the TFIIH complex and subsequent scanning for lesions in the opposite strand in a 5'-to-3' direction by the NER machinery. Cyclobutane pyrimidine dimers (CPDs) which are formed upon UV-induced DNA damage esacpe detection by the XPC complex due to a low degree of structural perurbation. Instead they are detected by the UV-DDB complex which in turn recruits and cooperates with the XPC complex in the respective DNA repair. In vitro, the XPC:RAD23B dimer is sufficient to initiate NER; it preferentially binds to cisplatin and UV-damaged double-stranded DNA and also binds to a variety of chemically and structurally diverse DNA adducts. XPC:RAD23B contacts DNA both 5' and 3' of a cisplatin lesion with a preference for the 5' side. XPC:RAD23B induces a bend in DNA upon binding. XPC:RAD23B stimulates the activity of DNA glycosylases TDG and SMUG1.. | |
Protein Sequence | MARKRAAGGEPRGRELRSQKSKAKSKARREEEEEDAFEDEKPPKKSLLSKVSQGKRKRGCSHPGGSADGPAKKKVAKVTVKSENLKVIKDEALSDGDDLRDFPSDLKKAHHLKRGATMNEDSNEEEEESENDWEEVEELSEPVLGDVRESTAFSRSLLPVKPVEIEIETPEQAKTRERSEKIKLEFETYLRRAMKRFNKGVHEDTHKVHLLCLLANGFYRNNICSQPDLHAIGLSIIPARFTRVLPRDVDTYYLSNLVKWFIGTFTVNAELSASEQDNLQTTLERRFAIYSARDDEELVHIFLLILRALQLLTRLVLSLQPIPLKSATAKGKKPSKERLTADPGGSSETSSQVLENHTKPKTSKGTKQEETFAKGTCRPSAKGKRNKGGRKKRSKPSSSEEDEGPGDKQEKATQRRPHGRERRVASRVSYKEESGSDEAGSGSDFELSSGEASDPSDEDSEPGPPKQRKAPAPQRTKAGSKSASRTHRGSHRKDPSLPAASSSSSSSKRGKKMCSDGEKAEKRSIAGIDQWLEVFCEQEEKWVCVDCVHGVVGQPLTCYKYATKPMTYVVGIDSDGWVRDVTQRYDPVWMTVTRKCRVDAEWWAETLRPYQSPFMDREKKEDLEFQAKHMDQPLPTAIGLYKNHPLYALKRHLLKYEAIYPETAAILGYCRGEAVYSRDCVHTLHSRDTWLKKARVVRLGEVPYKMVKGFSNRARKARLAEPQLREENDLGLFGYWQTEEYQPPVAVDGKVPRNEFGNVYLFLPSMMPIGCVQLNLPNLHRVARKLDIDCVQAITGFDFHGGYSHPVTDGYIVCEEFKDVLLTAWENEQAVIERKEKEKKEKRALGNWKLLAKGLLIRERLKRRYGPKSEAAAPHTDAGGGLSSDEEEGTSSQAEAARILAASWPQNREDEEKQKLKGGPKKTKREKKAAASHLFPFEQL | |
Overview of Protein Modification Sites with Functional and Structural Information | ||
* ASA = Accessible Surface Area
Locations | Modification | Substrate Peptides & Secondary Structure |
ASA (%) | Reference | Orthologous Protein Cluster |
---|---|---|---|---|---|
41 | Sumoylation | EDAFEDEKPPKKSLL HHHCCCCCCCCHHHH | 78.07 | 28112733 | |
44 | Acetylation | FEDEKPPKKSLLSKV CCCCCCCCHHHHHHH | 64.62 | 20167786 | |
45 | Acetylation | EDEKPPKKSLLSKVS CCCCCCCHHHHHHHH | 52.70 | 20167786 | |
46 | Phosphorylation | DEKPPKKSLLSKVSQ CCCCCCHHHHHHHHC | 40.44 | 24719451 | |
50 | Acetylation | PKKSLLSKVSQGKRK CCHHHHHHHHCCCCC | 45.97 | 20167786 | |
50 | Ubiquitination | PKKSLLSKVSQGKRK CCHHHHHHHHCCCCC | 45.97 | - | |
58 | Methylation | VSQGKRKRGCSHPGG HHCCCCCCCCCCCCC | 56.22 | 115920121 | |
61 | Phosphorylation | GKRKRGCSHPGGSAD CCCCCCCCCCCCCCC | 35.22 | 25159151 | |
66 | Phosphorylation | GCSHPGGSADGPAKK CCCCCCCCCCCHHCC | 29.15 | 25627689 | |
72 | Acetylation | GSADGPAKKKVAKVT CCCCCHHCCEEEEEE | 57.15 | 25953088 | |
79 | Phosphorylation | KKKVAKVTVKSENLK CCEEEEEEEECCCEE | 22.85 | - | |
81 | Sumoylation | KVAKVTVKSENLKVI EEEEEEEECCCEEEE | 42.56 | - | |
81 | Sumoylation | KVAKVTVKSENLKVI EEEEEEEECCCEEEE | 42.56 | 28112733 | |
81 | Ubiquitination | KVAKVTVKSENLKVI EEEEEEEECCCEEEE | 42.56 | - | |
81 | Acetylation | KVAKVTVKSENLKVI EEEEEEEECCCEEEE | 42.56 | 25953088 | |
86 | Ubiquitination | TVKSENLKVIKDEAL EEECCCEEEEEHHHC | 54.20 | - | |
89 | Sumoylation | SENLKVIKDEALSDG CCCEEEEEHHHCCCC | 53.13 | 28112733 | |
94 | Phosphorylation | VIKDEALSDGDDLRD EEEHHHCCCCCCHHC | 46.74 | 29255136 | |
104 | Phosphorylation | DDLRDFPSDLKKAHH CCHHCCCHHHHHHHH | 56.41 | 23927012 | |
117 | Phosphorylation | HHLKRGATMNEDSNE HHHHCCCCCCCCCCH | 24.29 | 17081983 | |
122 | Phosphorylation | GATMNEDSNEEEEES CCCCCCCCCHHHHHH | 39.71 | 22617229 | |
129 | Phosphorylation | SNEEEEESENDWEEV CCHHHHHHHCCHHHH | 45.00 | 22617229 | |
140 | Phosphorylation | WEEVEELSEPVLGDV HHHHHHHCCCCCCCH | 43.04 | 20068231 | |
150 | Phosphorylation | VLGDVRESTAFSRSL CCCCHHHHCCCCCCC | 17.93 | - | |
154 | Phosphorylation | VRESTAFSRSLLPVK HHHHCCCCCCCCCCC | 20.63 | - | |
156 | Phosphorylation | ESTAFSRSLLPVKPV HHCCCCCCCCCCCCE | 32.81 | 21712546 | |
161 | Ubiquitination | SRSLLPVKPVEIEIE CCCCCCCCCEEEEEE | 41.21 | 21890473 | |
161 | Acetylation | SRSLLPVKPVEIEIE CCCCCCCCCEEEEEE | 41.21 | 23236377 | |
161 | Sumoylation | SRSLLPVKPVEIEIE CCCCCCCCCEEEEEE | 41.21 | 28112733 | |
169 | Phosphorylation | PVEIEIETPEQAKTR CEEEEEECHHHHHHH | 37.47 | 25159151 | |
174 | Ubiquitination | IETPEQAKTRERSEK EECHHHHHHHHHHHH | 48.05 | 21890473 | |
181 | Ubiquitination | KTRERSEKIKLEFET HHHHHHHHHHHHHHH | 46.52 | - | |
183 | Ubiquitination | RERSEKIKLEFETYL HHHHHHHHHHHHHHH | 53.70 | - | |
188 | Phosphorylation | KIKLEFETYLRRAMK HHHHHHHHHHHHHHH | 32.93 | 25841592 | |
189 | Phosphorylation | IKLEFETYLRRAMKR HHHHHHHHHHHHHHH | 7.33 | 25841592 | |
291 | Phosphorylation | ERRFAIYSARDDEEL HHHEEEEECCCHHHH | 15.66 | 23090842 | |
318 | Phosphorylation | LLTRLVLSLQPIPLK HHHHHHHHCCCCCCC | 19.92 | 28152594 | |
326 | Phosphorylation | LQPIPLKSATAKGKK CCCCCCCCCCCCCCC | 38.24 | 28152594 | |
328 | Phosphorylation | PIPLKSATAKGKKPS CCCCCCCCCCCCCCC | 35.67 | 28152594 | |
335 | Phosphorylation | TAKGKKPSKERLTAD CCCCCCCCHHCCCCC | 56.90 | 23898821 | |
340 | Phosphorylation | KPSKERLTADPGGSS CCCHHCCCCCCCCCC | 34.92 | 23927012 | |
346 | Phosphorylation | LTADPGGSSETSSQV CCCCCCCCCHHHHHH | 30.80 | 23401153 | |
347 | Phosphorylation | TADPGGSSETSSQVL CCCCCCCCHHHHHHH | 48.44 | 23401153 | |
349 | Phosphorylation | DPGGSSETSSQVLEN CCCCCCHHHHHHHHH | 35.31 | 23927012 | |
350 | Phosphorylation | PGGSSETSSQVLENH CCCCCHHHHHHHHHC | 18.09 | 25159151 | |
351 | Phosphorylation | GGSSETSSQVLENHT CCCCHHHHHHHHHCC | 31.56 | 17525332 | |
358 | Phosphorylation | SQVLENHTKPKTSKG HHHHHHCCCCCCCCC | 61.70 | 23927012 | |
359 | Ubiquitination | QVLENHTKPKTSKGT HHHHHCCCCCCCCCC | 36.65 | 21890473 | |
359 | Acetylation | QVLENHTKPKTSKGT HHHHHCCCCCCCCCC | 36.65 | 26051181 | |
361 | Ubiquitination | LENHTKPKTSKGTKQ HHHCCCCCCCCCCCC | 67.97 | - | |
367 | Ubiquitination | PKTSKGTKQEETFAK CCCCCCCCCCCCCCC | 65.46 | - | |
371 | O-linked_Glycosylation | KGTKQEETFAKGTCR CCCCCCCCCCCCCCC | 28.30 | 30379171 | |
374 | Ubiquitination | KQEETFAKGTCRPSA CCCCCCCCCCCCCCC | 51.03 | - | |
374 | Acetylation | KQEETFAKGTCRPSA CCCCCCCCCCCCCCC | 51.03 | 25953088 | |
394 | Phosphorylation | KGGRKKRSKPSSSEE CCCCCCCCCCCCCCC | 58.77 | 23403867 | |
397 | Phosphorylation | RKKRSKPSSSEEDEG CCCCCCCCCCCCCCC | 50.67 | 25159151 | |
398 | Phosphorylation | KKRSKPSSSEEDEGP CCCCCCCCCCCCCCC | 50.74 | 26055452 | |
399 | Phosphorylation | KRSKPSSSEEDEGPG CCCCCCCCCCCCCCC | 49.71 | 26055452 | |
453 | Phosphorylation | ELSSGEASDPSDEDS CCCCCCCCCCCCCCC | 45.83 | 24275569 | |
456 | Phosphorylation | SGEASDPSDEDSEPG CCCCCCCCCCCCCCC | 59.63 | 24275569 | |
460 | Phosphorylation | SDPSDEDSEPGPPKQ CCCCCCCCCCCCCCC | 43.58 | 24275569 | |
482 | Phosphorylation | RTKAGSKSASRTHRG CCCCCCCCCCCCCCC | 32.92 | 24719451 | |
484 | Phosphorylation | KAGSKSASRTHRGSH CCCCCCCCCCCCCCC | 44.81 | 24719451 | |
493 | Ubiquitination | THRGSHRKDPSLPAA CCCCCCCCCCCCCCC | 69.44 | - | |
496 | Phosphorylation | GSHRKDPSLPAASSS CCCCCCCCCCCCCCC | 58.06 | 25159151 | |
501 | Phosphorylation | DPSLPAASSSSSSSK CCCCCCCCCCCCCCC | 32.62 | 25627689 | |
502 | Phosphorylation | PSLPAASSSSSSSKR CCCCCCCCCCCCCCC | 29.52 | 25627689 | |
503 | Phosphorylation | SLPAASSSSSSSKRG CCCCCCCCCCCCCCC | 31.57 | 25627689 | |
504 | Phosphorylation | LPAASSSSSSSKRGK CCCCCCCCCCCCCCC | 35.87 | 25627689 | |
505 | Phosphorylation | PAASSSSSSSKRGKK CCCCCCCCCCCCCCC | 40.35 | 25627689 | |
506 | Phosphorylation | AASSSSSSSKRGKKM CCCCCCCCCCCCCCC | 41.65 | 25627689 | |
507 | Phosphorylation | ASSSSSSSKRGKKMC CCCCCCCCCCCCCCC | 28.46 | 25627689 | |
508 | Ubiquitination | SSSSSSSKRGKKMCS CCCCCCCCCCCCCCC | 68.09 | - | |
515 | Phosphorylation | KRGKKMCSDGEKAEK CCCCCCCCCCHHHHH | 45.19 | 24719451 | |
560 | Ubiquitination | GQPLTCYKYATKPMT CCCEEEEEECCCCEE | 30.47 | - | |
567 | Phosphorylation | KYATKPMTYVVGIDS EECCCCEEEEEEECC | 22.99 | 27762562 | |
619 | Ubiquitination | SPFMDREKKEDLEFQ CCCCCHHHHHHHHHH | 63.46 | - | |
620 | Ubiquitination | PFMDREKKEDLEFQA CCCCHHHHHHHHHHH | 52.27 | - | |
628 | Ubiquitination | EDLEFQAKHMDQPLP HHHHHHHHHCCCCCC | 28.78 | - | |
642 | Ubiquitination | PTAIGLYKNHPLYAL CCHHHHHCCCHHHHH | 54.55 | - | |
650 | Ubiquitination | NHPLYALKRHLLKYE CCHHHHHHHHHHHHH | 29.60 | - | |
655 | Sumoylation | ALKRHLLKYEAIYPE HHHHHHHHHHHHCHH | 47.61 | - | |
655 | Sumoylation | ALKRHLLKYEAIYPE HHHHHHHHHHHHCHH | 47.61 | - | |
656 | Phosphorylation | LKRHLLKYEAIYPET HHHHHHHHHHHCHHH | 15.57 | 21406692 | |
660 | Phosphorylation | LLKYEAIYPETAAIL HHHHHHHCHHHHHHH | 11.32 | 21406692 | |
663 | Phosphorylation | YEAIYPETAAILGYC HHHHCHHHHHHHHHH | 19.51 | 21406692 | |
669 | Phosphorylation | ETAAILGYCRGEAVY HHHHHHHHHCCCEEE | 3.89 | 21406692 | |
676 | Phosphorylation | YCRGEAVYSRDCVHT HHCCCEEECCCCHHH | 12.68 | - | |
677 | Phosphorylation | CRGEAVYSRDCVHTL HCCCEEECCCCHHHH | 18.29 | - | |
693 | Ubiquitination | SRDTWLKKARVVRLG CCCCHHHHCEEEEEC | 38.97 | - | |
704 | Phosphorylation | VRLGEVPYKMVKGFS EEECCCCHHHHCCCC | 19.52 | 20068231 | |
705 | Ubiquitination | RLGEVPYKMVKGFSN EECCCCHHHHCCCCH | 31.02 | - | |
708 | Ubiquitination | EVPYKMVKGFSNRAR CCCHHHHCCCCHHHH | 51.22 | - | |
711 | Phosphorylation | YKMVKGFSNRARKAR HHHHCCCCHHHHHHH | 33.79 | 20068231 | |
711 | O-linked_Glycosylation | YKMVKGFSNRARKAR HHHHCCCCHHHHHHH | 33.79 | 30379171 | |
750 | Ubiquitination | PPVAVDGKVPRNEFG CCEEECCEECCCCCC | 44.60 | 21890473 | |
785 | Ubiquitination | NLHRVARKLDIDCVQ CHHHHHHHCCCCHHH | 40.55 | - | |
812 | Ubiquitination | HPVTDGYIVCEEFKD CCCCCCEEEEHHHHH | 3.32 | 21890473 | |
849 | Ubiquitination | KRALGNWKLLAKGLL HHHHCCHHHHHHHHH | 37.31 | 21890473 | |
853 | Ubiquitination | GNWKLLAKGLLIRER CCHHHHHHHHHHHHH | 50.49 | - | |
865 | Phosphorylation | RERLKRRYGPKSEAA HHHHHHHHCCCCCCC | 41.64 | 23312004 | |
869 | Phosphorylation | KRRYGPKSEAAAPHT HHHHCCCCCCCCCCC | 35.28 | 22167270 | |
876 | Phosphorylation | SEAAAPHTDAGGGLS CCCCCCCCCCCCCCC | 26.87 | 19664994 | |
883 | Phosphorylation | TDAGGGLSSDEEEGT CCCCCCCCCCCCCCC | 38.73 | 29255136 | |
884 | Phosphorylation | DAGGGLSSDEEEGTS CCCCCCCCCCCCCCC | 54.83 | 29255136 | |
890 | Phosphorylation | SSDEEEGTSSQAEAA CCCCCCCCCHHHHHH | 28.60 | 29255136 | |
891 | Phosphorylation | SDEEEGTSSQAEAAR CCCCCCCCHHHHHHH | 31.17 | 29255136 | |
892 | Phosphorylation | DEEEGTSSQAEAARI CCCCCCCHHHHHHHH | 32.99 | 17525332 | |
903 | Phosphorylation | AARILAASWPQNRED HHHHHHHHCCCCCCH | 33.41 | 25159151 | |
921 | 2-Hydroxyisobutyrylation | QKLKGGPKKTKREKK HHHCCCCCCCHHHHH | 76.09 | - | |
932 | Phosphorylation | REKKAAASHLFPFEQ HHHHHHHHHCCCHHH | 18.92 | 24850871 |
Modified Location | Modified Residue | Modification | Function | Reference | ||
---|---|---|---|---|---|---|
Oops, there are no descriptions of PTM sites of XPC_HUMAN !! |
* Distance = the distance between SAP position and PTM sites.
Modified Location | Modification | Variant Position (Distance <= 10) |
Residue Change | SAP | Related Disease | Reference |
---|---|---|---|---|---|---|
Oops, there are no SNP-PTM records of XPC_HUMAN !! |
Kegg Disease | ||||||
---|---|---|---|---|---|---|
There are no disease associations of PTM sites. | ||||||
OMIM Disease | ||||||
278720 | Xeroderma pigmentosum complementation group C (XP-C) | |||||
Kegg Drug | ||||||
There are no disease associations of PTM sites. | ||||||
DrugBank | ||||||
There are no disease associations of PTM sites. |
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Phosphorylation | |
Reference | PubMed |
"Quantitative phosphoproteomic analysis of T cell receptor signalingreveals system-wide modulation of protein-protein interactions."; Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K.,Rodionov V., Han D.K.; Sci. Signal. 2:RA46-RA46(2009). Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-883 AND SER-884, ANDMASS SPECTROMETRY. | |
"Large-scale phosphoproteome analysis of human liver tissue byenrichment and fractionation of phosphopeptides with strong anionexchange chromatography."; Han G., Ye M., Zhou H., Jiang X., Feng S., Jiang X., Tian R., Wan D.,Zou H., Gu J.; Proteomics 8:1346-1361(2008). Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-883 AND SER-884, ANDMASS SPECTROMETRY. | |
"A quantitative atlas of mitotic phosphorylation."; Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E.,Elledge S.J., Gygi S.P.; Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008). Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-94; THR-169; SER-883;SER-884 AND SER-891, AND MASS SPECTROMETRY. | |
"Combining protein-based IMAC, peptide-based IMAC, and MudPIT forefficient phosphoproteomic analysis."; Cantin G.T., Yi W., Lu B., Park S.K., Xu T., Lee J.-D.,Yates J.R. III; J. Proteome Res. 7:1346-1351(2008). Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-883 AND SER-884, ANDMASS SPECTROMETRY. | |
"ATM and ATR substrate analysis reveals extensive protein networksresponsive to DNA damage."; Matsuoka S., Ballif B.A., Smogorzewska A., McDonald E.R. III,Hurov K.E., Luo J., Bakalarski C.E., Zhao Z., Solimini N.,Lerenthal Y., Shiloh Y., Gygi S.P., Elledge S.J.; Science 316:1160-1166(2007). Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-347; SER-351; SER-883;SER-884 AND SER-892, AND MASS SPECTROMETRY. | |
"Toward a global characterization of the phosphoproteome in prostatecancer cells: identification of phosphoproteins in the LNCaP cellline."; Giorgianni F., Zhao Y., Desiderio D.M., Beranova-Giorgianni S.; Electrophoresis 28:2027-2034(2007). Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-883 AND SER-884, ANDMASS SPECTROMETRY. | |
"Global, in vivo, and site-specific phosphorylation dynamics insignaling networks."; Olsen J.V., Blagoev B., Gnad F., Macek B., Kumar C., Mortensen P.,Mann M.; Cell 127:635-648(2006). Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-94, AND MASSSPECTROMETRY. | |
"Large-scale characterization of HeLa cell nuclear phosphoproteins."; Beausoleil S.A., Jedrychowski M., Schwartz D., Elias J.E., Villen J.,Li J., Cohn M.A., Cantley L.C., Gygi S.P.; Proc. Natl. Acad. Sci. U.S.A. 101:12130-12135(2004). Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-883 AND SER-884, ANDMASS SPECTROMETRY. |