H2B3B_HUMAN - dbPTM
H2B3B_HUMAN - PTM Information in dbPTM
Basic Information of Protein
UniProt ID H2B3B_HUMAN
UniProt AC Q8N257
Protein Name Histone H2B type 3-B
Gene Name HIST3H2BB
Organism Homo sapiens (Human).
Sequence Length 126
Subcellular Localization Nucleus. Chromosome.
Protein Description Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling..
Protein Sequence MPDPSKSAPAPKKGSKKAVTKAQKKDGKKRKRGRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Overview of Protein Modification Sites with Functional and Structural Information
Experimental Post-Translational Modification Sites

* ASA = Accessible Surface Area

Locations Modification Substrate Peptides
&
Secondary Structure
ASA (%) Reference Orthologous
Protein Cluster
2Acetylation------MPDPSKSAP
------CCCCCCCCC
63.32-
5Phosphorylation---MPDPSKSAPAPK
---CCCCCCCCCCCC
46.7720873877
6N6-crotonyl-L-lysine--MPDPSKSAPAPKK
--CCCCCCCCCCCCC
56.90-
6Acetylation--MPDPSKSAPAPKK
--CCCCCCCCCCCCC
56.9016283522
6Butyrylation--MPDPSKSAPAPKK
--CCCCCCCCCCCCC
56.9027105113
6Crotonylation--MPDPSKSAPAPKK
--CCCCCCCCCCCCC
56.9021925322
6Lactoylation--MPDPSKSAPAPKK
--CCCCCCCCCCCCC
56.9031645732
6Lactylation--MPDPSKSAPAPKK
--CCCCCCCCCCCCC
56.9031645732
6Other--MPDPSKSAPAPKK
--CCCCCCCCCCCCC
56.9027105115
6Sumoylation--MPDPSKSAPAPKK
--CCCCCCCCCCCCC
56.9016283522
6Ubiquitination--MPDPSKSAPAPKK
--CCCCCCCCCCCCC
56.9033845483
7Phosphorylation-MPDPSKSAPAPKKG
-CCCCCCCCCCCCCC
43.7720873877
12N6-crotonyl-L-lysineSKSAPAPKKGSKKAV
CCCCCCCCCCCHHHH
72.39-
12AcetylationSKSAPAPKKGSKKAV
CCCCCCCCCCCHHHH
72.3932155916
12CrotonylationSKSAPAPKKGSKKAV
CCCCCCCCCCCHHHH
72.3921925322
12LactoylationSKSAPAPKKGSKKAV
CCCCCCCCCCCHHHH
72.3931645732
12LactylationSKSAPAPKKGSKKAV
CCCCCCCCCCCHHHH
72.3931645732
12OtherSKSAPAPKKGSKKAV
CCCCCCCCCCCHHHH
72.3927105115
13N6-crotonyl-L-lysineKSAPAPKKGSKKAVT
CCCCCCCCCCHHHHH
68.32-
13AcetylationKSAPAPKKGSKKAVT
CCCCCCCCCCHHHHH
68.3216283522
13CrotonylationKSAPAPKKGSKKAVT
CCCCCCCCCCHHHHH
68.3221925322
13OtherKSAPAPKKGSKKAVT
CCCCCCCCCCHHHHH
68.3224681537
15PhosphorylationAPAPKKGSKKAVTKA
CCCCCCCCHHHHHHH
39.601137958
16N6-crotonyl-L-lysinePAPKKGSKKAVTKAQ
CCCCCCCHHHHHHHH
54.11-
16AcetylationPAPKKGSKKAVTKAQ
CCCCCCCHHHHHHHH
54.1116283522
16CrotonylationPAPKKGSKKAVTKAQ
CCCCCCCHHHHHHHH
54.1121925322
16LactoylationPAPKKGSKKAVTKAQ
CCCCCCCHHHHHHHH
54.1131645732
17N6-crotonyl-L-lysineAPKKGSKKAVTKAQK
CCCCCCHHHHHHHHH
50.19-
17AcetylationAPKKGSKKAVTKAQK
CCCCCCHHHHHHHHH
50.1916627869
17CrotonylationAPKKGSKKAVTKAQK
CCCCCCHHHHHHHHH
50.1921925322
17GlutarylationAPKKGSKKAVTKAQK
CCCCCCHHHHHHHHH
50.1931542297
17LactoylationAPKKGSKKAVTKAQK
CCCCCCHHHHHHHHH
50.1931645732
17OtherAPKKGSKKAVTKAQK
CCCCCCHHHHHHHHH
50.1927105115
17UbiquitinationAPKKGSKKAVTKAQK
CCCCCCHHHHHHHHH
50.1925015289
21N6-crotonyl-L-lysineGSKKAVTKAQKKDGK
CCHHHHHHHHHHCCC
42.07-
21AcetylationGSKKAVTKAQKKDGK
CCHHHHHHHHHHCCC
42.0716283522
21ButyrylationGSKKAVTKAQKKDGK
CCHHHHHHHHHHCCC
42.0727105113
21CrotonylationGSKKAVTKAQKKDGK
CCHHHHHHHHHHCCC
42.0721925322
21LactoylationGSKKAVTKAQKKDGK
CCHHHHHHHHHHCCC
42.0731645732
21OtherGSKKAVTKAQKKDGK
CCHHHHHHHHHHCCC
42.0727105115
21SumoylationGSKKAVTKAQKKDGK
CCHHHHHHHHHHCCC
42.0716283522
21UbiquitinationGSKKAVTKAQKKDGK
CCHHHHHHHHHHCCC
42.0725015289
24N6-crotonyl-L-lysineKAVTKAQKKDGKKRK
HHHHHHHHHCCCCCC
58.66-
24AcetylationKAVTKAQKKDGKKRK
HHHHHHHHHCCCCCC
58.6624431477
24CrotonylationKAVTKAQKKDGKKRK
HHHHHHHHHCCCCCC
58.6621925322
24LactoylationKAVTKAQKKDGKKRK
HHHHHHHHHCCCCCC
58.6631645732
24OtherKAVTKAQKKDGKKRK
HHHHHHHHHCCCCCC
58.6624681537
24UbiquitinationKAVTKAQKKDGKKRK
HHHHHHHHHCCCCCC
58.6625015289
25AcetylationAVTKAQKKDGKKRKR
HHHHHHHHCCCCCCC
60.6824848081
25OtherAVTKAQKKDGKKRKR
HHHHHHHHCCCCCCC
60.6824681537
35N6-crotonyl-L-lysineKKRKRGRKESYSIYV
CCCCCCCCHHHHHHH
54.56-
35CrotonylationKKRKRGRKESYSIYV
CCCCCCCCHHHHHHH
54.5621925322
35GlutarylationKKRKRGRKESYSIYV
CCCCCCCCHHHHHHH
54.5631542297
35OtherKKRKRGRKESYSIYV
CCCCCCCCHHHHHHH
54.5627105115
35SuccinylationKKRKRGRKESYSIYV
CCCCCCCCHHHHHHH
54.5622389435
35UbiquitinationKKRKRGRKESYSIYV
CCCCCCCCHHHHHHH
54.5621890473
37PhosphorylationRKRGRKESYSIYVYK
CCCCCCHHHHHHHHH
27.5021712546
38PhosphorylationKRGRKESYSIYVYKV
CCCCCHHHHHHHHHH
10.5228152594
39PhosphorylationRGRKESYSIYVYKVL
CCCCHHHHHHHHHHH
19.4021712546
41PhosphorylationRKESYSIYVYKVLKQ
CCHHHHHHHHHHHHH
7.5628152594
43PhosphorylationESYSIYVYKVLKQVH
HHHHHHHHHHHHHHC
4.3828152594
44AcetylationSYSIYVYKVLKQVHP
HHHHHHHHHHHHHCC
30.92-
44GlutarylationSYSIYVYKVLKQVHP
HHHHHHHHHHHHHCC
30.9231542297
44LactoylationSYSIYVYKVLKQVHP
HHHHHHHHHHHHHCC
30.9231645732
44OtherSYSIYVYKVLKQVHP
HHHHHHHHHHHHHCC
30.9224681537
44UbiquitinationSYSIYVYKVLKQVHP
HHHHHHHHHHHHHCC
30.9223000965
47AcetylationIYVYKVLKQVHPDTG
HHHHHHHHHHCCCCC
53.9437092721
47GlutarylationIYVYKVLKQVHPDTG
HHHHHHHHHHCCCCC
53.9431542297
47MethylationIYVYKVLKQVHPDTG
HHHHHHHHHHCCCCC
53.9416627869
47OtherIYVYKVLKQVHPDTG
HHHHHHHHHHCCCCC
53.9424681537
47SumoylationIYVYKVLKQVHPDTG
HHHHHHHHHHCCCCC
53.9416627869
47UbiquitinationIYVYKVLKQVHPDTG
HHHHHHHHHHCCCCC
53.9421906983
53PhosphorylationLKQVHPDTGISSKAM
HHHHCCCCCCCHHHH
40.6530266825
56PhosphorylationVHPDTGISSKAMGIM
HCCCCCCCHHHHHHH
27.4223401153
57PhosphorylationHPDTGISSKAMGIMN
CCCCCCCHHHHHHHH
23.6330266825
58"N6,N6-dimethyllysine"PDTGISSKAMGIMNS
CCCCCCHHHHHHHHH
35.29-
58AcetylationPDTGISSKAMGIMNS
CCCCCCHHHHHHHHH
35.2924431487
58MethylationPDTGISSKAMGIMNS
CCCCCCHHHHHHHHH
35.2916627869
58OtherPDTGISSKAMGIMNS
CCCCCCHHHHHHHHH
35.2924681537
58UbiquitinationPDTGISSKAMGIMNS
CCCCCCHHHHHHHHH
35.2921906983
60SulfoxidationTGISSKAMGIMNSFV
CCCCHHHHHHHHHHH
4.2628183972
63SulfoxidationSSKAMGIMNSFVNDI
CHHHHHHHHHHHHHH
2.5928183972
65PhosphorylationKAMGIMNSFVNDIFE
HHHHHHHHHHHHHHH
17.1222617229
73MethylationFVNDIFERIASEASR
HHHHHHHHHHHHHHH
21.01-
76PhosphorylationDIFERIASEASRLAH
HHHHHHHHHHHHHHH
31.1822817900
79PhosphorylationERIASEASRLAHYNK
HHHHHHHHHHHHHCC
24.6322817900
80MethylationRIASEASRLAHYNKR
HHHHHHHHHHHHCCC
42.83-
84PhosphorylationEASRLAHYNKRSTIT
HHHHHHHHCCCCCCC
19.4425884760
86"N6,N6,N6-trimethyllysine"SRLAHYNKRSTITSR
HHHHHHCCCCCCCHH
40.33-
86AcetylationSRLAHYNKRSTITSR
HHHHHHCCCCCCCHH
40.3330589229
86LactoylationSRLAHYNKRSTITSR
HHHHHHCCCCCCCHH
40.3331645732
86MethylationSRLAHYNKRSTITSR
HHHHHHCCCCCCCHH
40.33-
86OtherSRLAHYNKRSTITSR
HHHHHHCCCCCCCHH
40.3327105115
86UbiquitinationSRLAHYNKRSTITSR
HHHHHHCCCCCCCHH
40.3327667366
87MethylationRLAHYNKRSTITSRE
HHHHHCCCCCCCHHH
35.08-
88PhosphorylationLAHYNKRSTITSREV
HHHHCCCCCCCHHHH
26.2730266825
89PhosphorylationAHYNKRSTITSREVQ
HHHCCCCCCCHHHHH
32.1030266825
91PhosphorylationYNKRSTITSREVQTA
HCCCCCCCHHHHHHH
23.0930266825
92PhosphorylationNKRSTITSREVQTAV
CCCCCCCHHHHHHHH
23.6920860994
93MethylationKRSTITSREVQTAVR
CCCCCCHHHHHHHHH
39.18-
100MethylationREVQTAVRLLLPGEL
HHHHHHHHHHCCHHH
19.70115387663
109UbiquitinationLLPGELAKHAVSEGT
HCCHHHHHHHHHHHH
44.7321890473
109SumoylationLLPGELAKHAVSEGT
HCCHHHHHHHHHHHH
44.73-
109AcetylationLLPGELAKHAVSEGT
HCCHHHHHHHHHHHH
44.7330589247
109GlutarylationLLPGELAKHAVSEGT
HCCHHHHHHHHHHHH
44.7331542297
109LactoylationLLPGELAKHAVSEGT
HCCHHHHHHHHHHHH
44.7331645732
109MethylationLLPGELAKHAVSEGT
HCCHHHHHHHHHHHH
44.7316627869
109NeddylationLLPGELAKHAVSEGT
HCCHHHHHHHHHHHH
44.7332015554
109OtherLLPGELAKHAVSEGT
HCCHHHHHHHHHHHH
44.7324681537
109SumoylationLLPGELAKHAVSEGT
HCCHHHHHHHHHHHH
44.7316627869
109UbiquitinationLLPGELAKHAVSEGT
HCCHHHHHHHHHHHH
44.7323000965
113O-linked_GlycosylationELAKHAVSEGTKAVT
HHHHHHHHHHHHHHH
30.96UniProtKB CARBOHYD
113PhosphorylationELAKHAVSEGTKAVT
HHHHHHHHHHHHHHH
30.9628176443
116PhosphorylationKHAVSEGTKAVTKYT
HHHHHHHHHHHHHHC
16.2720068231
117SumoylationHAVSEGTKAVTKYTS
HHHHHHHHHHHHHCC
52.28-
117AcetylationHAVSEGTKAVTKYTS
HHHHHHHHHHHHHCC
52.2822389435
117GlutarylationHAVSEGTKAVTKYTS
HHHHHHHHHHHHHCC
52.2831542297
117LactoylationHAVSEGTKAVTKYTS
HHHHHHHHHHHHHCC
52.2831645732
117MalonylationHAVSEGTKAVTKYTS
HHHHHHHHHHHHHCC
52.2822389435
117MethylationHAVSEGTKAVTKYTS
HHHHHHHHHHHHHCC
52.28-
117NeddylationHAVSEGTKAVTKYTS
HHHHHHHHHHHHHCC
52.2832015554
117OtherHAVSEGTKAVTKYTS
HHHHHHHHHHHHHCC
52.2827105115
117SuccinylationHAVSEGTKAVTKYTS
HHHHHHHHHHHHHCC
52.2822389435
117SumoylationHAVSEGTKAVTKYTS
HHHHHHHHHHHHHCC
52.2822389435
117UbiquitinationHAVSEGTKAVTKYTS
HHHHHHHHHHHHHCC
52.2823000965
120PhosphorylationSEGTKAVTKYTSSK-
HHHHHHHHHHCCCC-
24.1620068231
121UbiquitinationEGTKAVTKYTSSK--
HHHHHHHHHCCCC--
39.6721890473
121SumoylationEGTKAVTKYTSSK--
HHHHHHHHHCCCC--
39.67-
121AcetylationEGTKAVTKYTSSK--
HHHHHHHHHCCCC--
39.6730589235
121GlutarylationEGTKAVTKYTSSK--
HHHHHHHHHCCCC--
39.6731542297
121LactoylationEGTKAVTKYTSSK--
HHHHHHHHHCCCC--
39.6731645732
121NeddylationEGTKAVTKYTSSK--
HHHHHHHHHCCCC--
39.6732015554
121OtherEGTKAVTKYTSSK--
HHHHHHHHHCCCC--
39.6727105115
121SuccinylationEGTKAVTKYTSSK--
HHHHHHHHHCCCC--
39.6722389435
121SumoylationEGTKAVTKYTSSK--
HHHHHHHHHCCCC--
39.6722389435
121UbiquitinationEGTKAVTKYTSSK--
HHHHHHHHHCCCC--
39.6722389435
122PhosphorylationGTKAVTKYTSSK---
HHHHHHHHCCCC---
11.50-
123PhosphorylationTKAVTKYTSSK----
HHHHHHHCCCC----
28.2524719451
124PhosphorylationKAVTKYTSSK-----
HHHHHHCCCC-----
32.8027251275
126AcetylationVTKYTSSK-------
HHHHCCCC-------
65.2130589253
126NeddylationVTKYTSSK-------
HHHHCCCC-------
65.2132015554
126UbiquitinationVTKYTSSK-------
HHHHCCCC-------
65.2123000965

Upstream regulatory proteins (kinases for phosphorylation sites, E3 ubiquitin ligases of ubiquitination sites, ...)
Modified Location Modified Residue Modification Type of Upstream Proteins Gene Name of Upstream Proteins UniProt AC of Upstream Proteins Sources
15SPhosphorylationKinaseMST1P26927
Uniprot
15SPhosphorylationKinaseSTK4Q13043
GPS
37SPhosphorylationKinaseAMPKQ9Y478
Uniprot

Functions of PTM Sites
Modified Location Modified Residue Modification Function Reference
4KMethylation

16627869
4KMethylation

16627869
4Kubiquitylation

16627869
4Kubiquitylation

16627869
15SPhosphorylation

12757711
15SPhosphorylation

12757711
35KMethylation

21925322
35Kubiquitylation

21925322
37SPhosphorylation

12757711
79KMethylation

16627869
79KMethylation

16627869
79Kubiquitylation

16627869
79Kubiquitylation

16627869
113Subiquitylation

-
121Kubiquitylation

16627869
121Kubiquitylation

16627869
121KMethylation

16627869

Disease-associated PTM Sites based on SAP

* Distance = the distance between SAP position and PTM sites.

Modified Location Modification Variant Position
(Distance <= 10)
Residue Change SAP Related Disease Reference

Oops, there are no SNP-PTM records of H2B3B_HUMAN !!

Protein-Protein Interaction
Interacting Protein Gene Name Interaction Type PPI Reference Domain-Domain Interactions
HDAC1_HUMANHDAC1physical
21846774
CDN2A_HUMANCDKN2Aphysical
21846774
ARF_HUMANCDKN2Aphysical
21846774
RL5_HUMANRPL5physical
21846774
HUWE1_HUMANHUWE1physical
21846774

Drug and Disease Associations
Kegg Disease
There are no disease associations of PTM sites.
OMIM Disease
There are no disease associations of PTM sites.
Kegg Drug
There are no disease associations of PTM sites.
DrugBank
There are no disease associations of PTM sites.
Regulatory Network of H2B3B_HUMAN

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Related Literatures of Post-Translational Modification
Acetylation
ReferencePubMed
"Lysine acetylation targets protein complexes and co-regulates majorcellular functions.";
Choudhary C., Kumar C., Gnad F., Nielsen M.L., Rehman M., Walther T.,Olsen J.V., Mann M.;
Science 325:834-840(2009).
Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT LYS-86 AND LYS-121, AND MASSSPECTROMETRY.
"Substrate and functional diversity of lysine acetylation revealed bya proteomics survey.";
Kim S.C., Sprung R., Chen Y., Xu Y., Ball H., Pei J., Cheng T.,Kho Y., Xiao H., Xiao L., Grishin N.V., White M., Yang X.-J., Zhao Y.;
Mol. Cell 23:607-618(2006).
Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT LYS-12; LYS-13; LYS-16; LYS-17;LYS-21; LYS-24 AND LYS-109, AND MASS SPECTROMETRY.
"Inhibition of core histones acetylation by carcinogenic nickel(II).";
Golebiowski F., Kasprzak K.S.;
Mol. Cell. Biochem. 279:133-139(2005).
Cited for: ACETYLATION AT LYS-6; LYS-13; LYS-16 AND LYS-21.
"Quantitative proteomic analysis of post-translational modificationsof human histones.";
Beck H.C., Nielsen E.C., Matthiesen R., Jensen L.H., Sehested M.,Finn P., Grauslund M., Hansen A.M., Jensen O.N.;
Mol. Cell. Proteomics 5:1314-1325(2006).
Cited for: PROTEIN SEQUENCE OF 7-24, ACETYLATION AT LYS-6; LYS-12; LYS-13;LYS-16; LYS-17 AND LYS-21, METHYLATION AT LYS-47; LYS-58 AND LYS-109,UBIQUITINATION AT LYS-121, AND MASS SPECTROMETRY.
Methylation
ReferencePubMed
"Quantitative proteomic analysis of post-translational modificationsof human histones.";
Beck H.C., Nielsen E.C., Matthiesen R., Jensen L.H., Sehested M.,Finn P., Grauslund M., Hansen A.M., Jensen O.N.;
Mol. Cell. Proteomics 5:1314-1325(2006).
Cited for: PROTEIN SEQUENCE OF 7-24, ACETYLATION AT LYS-6; LYS-12; LYS-13;LYS-16; LYS-17 AND LYS-21, METHYLATION AT LYS-47; LYS-58 AND LYS-109,UBIQUITINATION AT LYS-121, AND MASS SPECTROMETRY.
Phosphorylation
ReferencePubMed
"Apoptotic phosphorylation of histone H2B is mediated by mammaliansterile twenty kinase.";
Cheung W.L., Ajiro K., Samejima K., Kloc M., Cheung P., Mizzen C.A.,Beeser A., Etkin L.D., Chernoff J., Earnshaw W.C., Allis C.D.;
Cell 113:507-517(2003).
Cited for: PHOSPHORYLATION AT SER-15.
Ubiquitylation
ReferencePubMed
"Histone H2B monoubiquitination functions cooperatively with FACT toregulate elongation by RNA polymerase II.";
Pavri R., Zhu B., Li G., Trojer P., Mandal S., Shilatifard A.,Reinberg D.;
Cell 125:703-717(2006).
Cited for: UBIQUITINATION AT LYS-121.
"Monoubiquitination of human histone H2B: the factors involved andtheir roles in HOX gene regulation.";
Zhu B., Zheng Y., Pham A.-D., Mandal S.S., Erdjument-Bromage H.,Tempst P., Reinberg D.;
Mol. Cell 20:601-611(2005).
Cited for: UBIQUITINATION AT LYS-121.
"Quantitative proteomic analysis of post-translational modificationsof human histones.";
Beck H.C., Nielsen E.C., Matthiesen R., Jensen L.H., Sehested M.,Finn P., Grauslund M., Hansen A.M., Jensen O.N.;
Mol. Cell. Proteomics 5:1314-1325(2006).
Cited for: PROTEIN SEQUENCE OF 7-24, ACETYLATION AT LYS-6; LYS-12; LYS-13;LYS-16; LYS-17 AND LYS-21, METHYLATION AT LYS-47; LYS-58 AND LYS-109,UBIQUITINATION AT LYS-121, AND MASS SPECTROMETRY.

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