YA11B_YEAST - dbPTM
YA11B_YEAST - PTM Information in dbPTM
Basic Information of Protein
UniProt ID YA11B_YEAST
UniProt AC O13527
Protein Name Truncated transposon Ty1-A Gag-Pol polyprotein
Gene Name TY1B-A
Organism Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast).
Sequence Length 1196
Subcellular Localization Cytoplasm. Nucleus.
Protein Description Reverse transcriptase/ribonuclease H (RT) is a multifunctional enzyme that catalyzes the conversion of the retro-elements RNA genome into dsDNA within the VLP. The enzyme displays a DNA polymerase activity that can copy either DNA or RNA templates, and a ribonuclease H (RNase H) activity that cleaves the RNA strand of RNA-DNA heteroduplexes during plus-strand synthesis and hydrolyzes RNA primers. The conversion leads to a linear dsDNA copy of the retrotransposon that includes long terminal repeats (LTRs) at both ends (By similarity).; Integrase (IN) targets the VLP to the nucleus, where a subparticle preintegration complex (PIC) containing at least integrase and the newly synthesized dsDNA copy of the retrotransposon must transit the nuclear membrane. Once in the nucleus, integrase performs the integration of the dsDNA into the host genome (By similarity)..
Protein Sequence METFTGYLKSTCFHQISPYPPSIMSIQVKVHANILILSFIECLRMPMHRQIRYSLKNNTITYFNESDVDWSSAIDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTKLRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSKKSARQHAGLAGLDISTLLPFGQPVIVNDHNPNSKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQGKESRLDQFNYDALTFDEDLNRLTASYHSFIASNEIQESNDLNIESDHDFQSDIELHPEQPRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNIRAPREVDPNISESNILPSKKRSSTPQISNIESTGSGGMHKLNVPLLAPMSQSNTHESSHASKSKDFRHSDSYSENETNHTNVPISSTGGTNNKTVPQISDQETEKRIIHRSPSIDASPPENNSSHNIVPIKTPTTVSEQNTEESIIADLPLPDLPPESPTEFPDPFKELPPINSHQTNSSLGGIGDSNAYTTINSKKRSLEDNETEIKVSRDTWNTKNMRSLEPPRSKKRIHLIAAVKAVKSIKPIRTTLRYDEAITYNKDIKEKEKYIEAYHKEVNQLLKMNTWDTDKYYDRKEIDPKRVINSMFIFNKKRDGTHKARFVARGDIQHPDTYDTGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEELYIRPPPHLGMNDKLIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEVRGWSCVFKNSQVTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGLEIKYQRGKYMKLGMEKSLTEKLPKLNVPLNPKGKKLRAPGQPGLYIDQDELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIWHKNKPTEPDNKLVAISDASYGNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLSYLIQELNKKPIIKGLLTDSRSTISIIKSTNEEKFRNRFFGTKAMRLRDEVSGNNLYVYYIETKKNIADVMTKPLPIKTFKLLTNKWIH
Overview of Protein Modification Sites with Functional and Structural Information
Experimental Post-Translational Modification Sites

* ASA = Accessible Surface Area

Locations Modification Substrate Peptides
&
Secondary Structure
ASA (%) Reference Orthologous
Protein Cluster
3Phosphorylation-----METFTGYLKS
-----CCCHHHHCHH
38.0530377154
5Phosphorylation---METFTGYLKSTC
---CCCHHHHCHHHC
32.1330377154
22PhosphorylationQISPYPPSIMSIQVK
CCCCCCCCCEEEEEE
26.8128889911
56UbiquitinationRQIRYSLKNNTITYF
HHHHHHCCCCEEEEE
42.0615699485
85UbiquitinationCPDCLIGKSTKHRHI
CCCCEECCCCCCCCC
48.2115699485
98UbiquitinationHIKGSRLKYQNSYEP
CCCCCCCCCCCCCCC
43.6217644757
122UbiquitinationGPVHNLPKSAPSYFI
CCCCCCCCCCCCEEE
63.5217644757
164UbiquitinationTTILAFIKNQFQASV
HHHHHHHHHHHHCEE
37.9415699485
189AcetylationYTNRTLHKFLEKNGI
CCHHHHHHHHHHCCC
55.5522865919
189UbiquitinationYTNRTLHKFLEKNGI
CCHHHHHHHHHHCCC
55.5523749301
193UbiquitinationTLHKFLEKNGITPCY
HHHHHHHHCCCCCCE
63.7223749301
253PhosphorylationIVRNSLASPKSKKSA
HHHHHCCCCCCHHHH
37.8525752575
291UbiquitinationNDHNPNSKIHPRGIP
CCCCCCCCCCCCCCC
52.2323749301
319AcetylationIIYLPSLKKTVDTTN
EEEECCCCEEECCCC
51.2224489116
319UbiquitinationIIYLPSLKKTVDTTN
EEEECCCCEEECCCC
51.2217644757
320UbiquitinationIYLPSLKKTVDTTNY
EEECCCCEEECCCCE
60.1017644757
321PhosphorylationYLPSLKKTVDTTNYV
EECCCCEEECCCCEE
23.2527017623
324PhosphorylationSLKKTVDTTNYVILQ
CCCEEECCCCEEEEC
16.7727017623
325PhosphorylationLKKTVDTTNYVILQG
CCEEECCCCEEEECC
21.7927017623
327PhosphorylationKTVDTTNYVILQGKE
EEECCCCEEEECCCH
6.1827017623
333AcetylationNYVILQGKESRLDQF
CEEEECCCHHHHHHC
39.2924489116
333UbiquitinationNYVILQGKESRLDQF
CEEEECCCHHHHHHC
39.2924961812
335PhosphorylationVILQGKESRLDQFNY
EEECCCHHHHHHCCC
41.4527017623
346PhosphorylationQFNYDALTFDEDLNR
HCCCCCCCCCHHHHH
30.6627017623
355PhosphorylationDEDLNRLTASYHSFI
CHHHHHHHHHHHHHH
15.4319779198
377PhosphorylationSNDLNIESDHDFQSD
CCCCCCCCCCCHHHC
36.1328889911
383PhosphorylationESDHDFQSDIELHPE
CCCCCHHHCCCCCCC
40.3228889911
397PhosphorylationEQPRNVLSKAVSPTD
CCCCCHHHHCCCCCC
17.8117330950
398AcetylationQPRNVLSKAVSPTDS
CCCCHHHHCCCCCCC
48.9622865919
398UbiquitinationQPRNVLSKAVSPTDS
CCCCHHHHCCCCCCC
48.9617644757
401PhosphorylationNVLSKAVSPTDSTPP
CHHHHCCCCCCCCCC
27.2617330950
403PhosphorylationLSKAVSPTDSTPPST
HHHCCCCCCCCCCCC
34.7717330950
405PhosphorylationKAVSPTDSTPPSTHT
HCCCCCCCCCCCCCC
45.3417330950
406PhosphorylationAVSPTDSTPPSTHTE
CCCCCCCCCCCCCCH
41.8717330950
409PhosphorylationPTDSTPPSTHTEDSK
CCCCCCCCCCCHHCC
33.7422890988
410PhosphorylationTDSTPPSTHTEDSKR
CCCCCCCCCCHHCCC
38.2922890988
412PhosphorylationSTPPSTHTEDSKRVS
CCCCCCCCHHCCCCC
41.3922890988
415PhosphorylationPSTHTEDSKRVSKTN
CCCCCHHCCCCCCCC
19.0122890988
416UbiquitinationSTHTEDSKRVSKTNI
CCCCHHCCCCCCCCC
69.9622817900
419PhosphorylationTEDSKRVSKTNIRAP
CHHCCCCCCCCCCCC
37.4821440633
420UbiquitinationEDSKRVSKTNIRAPR
HHCCCCCCCCCCCCC
42.6122817900
421PhosphorylationDSKRVSKTNIRAPRE
HCCCCCCCCCCCCCC
28.5028889911
434PhosphorylationREVDPNISESNILPS
CCCCCCCCHHHCCCC
41.4325521595
436PhosphorylationVDPNISESNILPSKK
CCCCCCHHHCCCCCC
23.5222890988
441PhosphorylationSESNILPSKKRSSTP
CHHHCCCCCCCCCCC
47.5722890988
442UbiquitinationESNILPSKKRSSTPQ
HHHCCCCCCCCCCCC
50.7117644757
443UbiquitinationSNILPSKKRSSTPQI
HHCCCCCCCCCCCCC
62.9517644757
445PhosphorylationILPSKKRSSTPQISN
CCCCCCCCCCCCCCC
47.6617330950
446PhosphorylationLPSKKRSSTPQISNI
CCCCCCCCCCCCCCC
48.4117330950
447PhosphorylationPSKKRSSTPQISNIE
CCCCCCCCCCCCCCE
22.0617330950
451PhosphorylationRSSTPQISNIESTGS
CCCCCCCCCCEECCC
26.8922890988
455PhosphorylationPQISNIESTGSGGMH
CCCCCCEECCCCCCC
33.9822890988
456PhosphorylationQISNIESTGSGGMHK
CCCCCEECCCCCCCC
23.6822890988
458PhosphorylationSNIESTGSGGMHKLN
CCCEECCCCCCCCCC
32.0622890988
463UbiquitinationTGSGGMHKLNVPLLA
CCCCCCCCCCCCEEE
32.6317644757
473PhosphorylationVPLLAPMSQSNTHES
CCEEEECCCCCCCCC
29.4228889911
475PhosphorylationLLAPMSQSNTHESSH
EEEECCCCCCCCCCC
36.0719779198
477PhosphorylationAPMSQSNTHESSHAS
EECCCCCCCCCCCCC
32.0628889911
480PhosphorylationSQSNTHESSHASKSK
CCCCCCCCCCCCCCC
21.5921440633
484PhosphorylationTHESSHASKSKDFRH
CCCCCCCCCCCCCCC
31.8528889911
485UbiquitinationHESSHASKSKDFRHS
CCCCCCCCCCCCCCC
63.4117644757
486PhosphorylationESSHASKSKDFRHSD
CCCCCCCCCCCCCCC
34.6628889911
487UbiquitinationSSHASKSKDFRHSDS
CCCCCCCCCCCCCCC
65.7015699485
492PhosphorylationKSKDFRHSDSYSENE
CCCCCCCCCCCCCCC
24.8117330950
494PhosphorylationKDFRHSDSYSENETN
CCCCCCCCCCCCCCC
33.3125521595
495PhosphorylationDFRHSDSYSENETNH
CCCCCCCCCCCCCCC
25.6225521595
496PhosphorylationFRHSDSYSENETNHT
CCCCCCCCCCCCCCC
37.5917330950
500PhosphorylationDSYSENETNHTNVPI
CCCCCCCCCCCCCCC
43.8317330950
503PhosphorylationSENETNHTNVPISST
CCCCCCCCCCCCCCC
39.7317330950
508PhosphorylationNHTNVPISSTGGTNN
CCCCCCCCCCCCCCC
18.7722890988
509PhosphorylationHTNVPISSTGGTNNK
CCCCCCCCCCCCCCC
31.6222890988
510PhosphorylationTNVPISSTGGTNNKT
CCCCCCCCCCCCCCC
32.6022890988
513PhosphorylationPISSTGGTNNKTVPQ
CCCCCCCCCCCCCCC
36.6422890988
516UbiquitinationSTGGTNNKTVPQISD
CCCCCCCCCCCCCCC
53.6317644757
517PhosphorylationTGGTNNKTVPQISDQ
CCCCCCCCCCCCCCH
39.2728132839
522PhosphorylationNKTVPQISDQETEKR
CCCCCCCCCHHHHHH
28.1725521595
526PhosphorylationPQISDQETEKRIIHR
CCCCCHHHHHHHHCC
40.9722890988
528AcetylationISDQETEKRIIHRSP
CCCHHHHHHHHCCCC
57.2125381059
528UbiquitinationISDQETEKRIIHRSP
CCCHHHHHHHHCCCC
57.2122817900
534PhosphorylationEKRIIHRSPSIDASP
HHHHHCCCCCCCCCC
14.6117330950
536PhosphorylationRIIHRSPSIDASPPE
HHHCCCCCCCCCCCC
34.0517330950
540PhosphorylationRSPSIDASPPENNSS
CCCCCCCCCCCCCCC
36.9221551504
546PhosphorylationASPPENNSSHNIVPI
CCCCCCCCCCCEEEC
44.5521551504
547PhosphorylationSPPENNSSHNIVPIK
CCCCCCCCCCEEECC
23.7622890988
554UbiquitinationSHNIVPIKTPTTVSE
CCCEEECCCCCCCCC
42.2415699485
581PhosphorylationLPDLPPESPTEFPDP
CCCCCCCCCCCCCCC
42.7825521595
583PhosphorylationDLPPESPTEFPDPFK
CCCCCCCCCCCCCCC
60.5821440633
597PhosphorylationKELPPINSHQTNSSL
CCCCCCCCCCCCCCC
20.0728889911
600PhosphorylationPPINSHQTNSSLGGI
CCCCCCCCCCCCCCC
31.4828889911
602PhosphorylationINSHQTNSSLGGIGD
CCCCCCCCCCCCCCC
30.2621440633
603PhosphorylationNSHQTNSSLGGIGDS
CCCCCCCCCCCCCCC
32.8625752575
614PhosphorylationIGDSNAYTTINSKKR
CCCCCCCCEECCCCC
20.8419779198
619UbiquitinationAYTTINSKKRSLEDN
CCCEECCCCCCCCCC
47.9515699485
620UbiquitinationYTTINSKKRSLEDNE
CCEECCCCCCCCCCC
47.2215699485
622PhosphorylationTINSKKRSLEDNETE
EECCCCCCCCCCCCE
45.0217330950
628PhosphorylationRSLEDNETEIKVSRD
CCCCCCCCEEEEEHH
49.6328132839
631AcetylationEDNETEIKVSRDTWN
CCCCCEEEEEHHCCC
28.1124489116
631UbiquitinationEDNETEIKVSRDTWN
CCCCCEEEEEHHCCC
28.1123749301
633PhosphorylationNETEIKVSRDTWNTK
CCCEEEEEHHCCCCC
21.3130377154
640UbiquitinationSRDTWNTKNMRSLEP
EHHCCCCCCCCCCCC
45.6022817900
661UbiquitinationIHLIAAVKAVKSIKP
HHHHHHHHHHHCCCC
42.6117644757
683AcetylationDEAITYNKDIKEKEK
CCCCCCCCCHHHHHH
50.8724489116
683UbiquitinationDEAITYNKDIKEKEK
CCCCCCCCCHHHHHH
50.8723749301
686AcetylationITYNKDIKEKEKYIE
CCCCCCHHHHHHHHH
73.2424489116
686UbiquitinationITYNKDIKEKEKYIE
CCCCCCHHHHHHHHH
73.2422817900
688UbiquitinationYNKDIKEKEKYIEAY
CCCCHHHHHHHHHHH
55.2822817900
690UbiquitinationKDIKEKEKYIEAYHK
CCHHHHHHHHHHHHH
63.7015699485
697AcetylationKYIEAYHKEVNQLLK
HHHHHHHHHHHHHHH
51.1624489116
697UbiquitinationKYIEAYHKEVNQLLK
HHHHHHHHHHHHHHH
51.1615699485
704UbiquitinationKEVNQLLKMNTWDTD
HHHHHHHHCCCCCCC
38.4015699485
722UbiquitinationDRKEIDPKRVINSMF
CCCCCCHHHHEEEEE
56.3915699485
733UbiquitinationNSMFIFNKKRDGTHK
EEEEEEECCCCCCCC
38.1417644757
734UbiquitinationSMFIFNKKRDGTHKA
EEEEEECCCCCCCCE
57.7517644757
826UbiquitinationKKSLYGLKQSGANWY
HHHHHCCHHCCCCHH
37.7515699485
828PhosphorylationSLYGLKQSGANWYET
HHHCCHHCCCCHHHH
37.9819779198
833PhosphorylationKQSGANWYETIKSYL
HHCCCCHHHHHHHHH
11.7319779198
837UbiquitinationANWYETIKSYLIKQC
CCHHHHHHHHHHHHH
40.2315699485
842UbiquitinationTIKSYLIKQCGMEEV
HHHHHHHHHHCCHHH
36.6224961812
881UbiquitinationSKDLNANKKIITTLK
HCCCCCCHHHHHHHH
42.8317644757
882UbiquitinationKDLNANKKIITTLKK
CCCCCCHHHHHHHHH
38.8717644757
888UbiquitinationKKIITTLKKQYDTKI
HHHHHHHHHHCCCEE
35.4217644757
889UbiquitinationKIITTLKKQYDTKII
HHHHHHHHHCCCEEE
58.1417644757
894UbiquitinationLKKQYDTKIINLGES
HHHHCCCEEEECCCC
38.4017644757
915UbiquitinationDILGLEIKYQRGKYM
EEECEEEEEECCCCH
26.4217644757
921PhosphorylationIKYQRGKYMKLGMEK
EEEECCCCHHCCCCH
11.4228132839
936UbiquitinationSLTEKLPKLNVPLNP
HHHHCCCCCCCCCCC
64.2317644757
944UbiquitinationLNVPLNPKGKKLRAP
CCCCCCCCCCCCCCC
80.4517644757
979AcetylationEKVHEMQKLIGLASY
HHHHHHHHHHHHHHH
40.5422865919
979UbiquitinationEKVHEMQKLIGLASY
HHHHHHHHHHHHHHH
40.5417644757
990UbiquitinationLASYVGYKFRFDLLY
HHHHCCHHHHHHHHH
24.9222106047
1036UbiquitinationDKQLIWHKNKPTEPD
CCEEEEECCCCCCCC
52.2315699485
1038UbiquitinationQLIWHKNKPTEPDNK
EEEEECCCCCCCCCC
59.1115699485
1045AcetylationKPTEPDNKLVAISDA
CCCCCCCCEEEEEEC
52.2824489116
1045UbiquitinationKPTEPDNKLVAISDA
CCCCCCCCEEEEEEC
52.2824961812
1061UbiquitinationYGNQPYYKSQIGNIY
CCCCCCEECCCCCEE
30.0017644757
1073UbiquitinationNIYLLNGKVIGGKST
CEEEECCEEECCCCC
29.6117644757
1081UbiquitinationVIGGKSTKASLTCTS
EECCCCCEEEEEECC
42.9715699485
1083PhosphorylationGGKSTKASLTCTSTT
CCCCCEEEEEECCCC
26.2630377154
1085PhosphorylationKSTKASLTCTSTTEA
CCCEEEEEECCCCHH
15.9630377154
1087PhosphorylationTKASLTCTSTTEAEI
CEEEEEECCCCHHHH
24.7130377154
1088PhosphorylationKASLTCTSTTEAEIH
EEEEEECCCCHHHHH
35.1630377154
1098PhosphorylationEAEIHAISESVPLLN
HHHHHHHHHCCHHHH
25.3030377154
1100PhosphorylationEIHAISESVPLLNNL
HHHHHHHCCHHHHHH
23.4230377154
1116UbiquitinationYLIQELNKKPIIKGL
HHHHHHHCCCCHHHH
72.9715699485
1117AcetylationLIQELNKKPIIKGLL
HHHHHHCCCCHHHHH
40.1425381059
1117UbiquitinationLIQELNKKPIIKGLL
HHHHHHCCCCHHHHH
40.1415699485
1130PhosphorylationLLTDSRSTISIIKST
HHCCCCHHHEEEECC
20.0321440633
1137PhosphorylationTISIIKSTNEEKFRN
HHEEEECCCHHHHHH
41.4627017623
1150UbiquitinationRNRFFGTKAMRLRDE
HHHHCCCCEEEECCC
40.3323749301
1171AcetylationYVYYIETKKNIADVM
EEEEEEECCCHHHHH
30.9124489116
1171UbiquitinationYVYYIETKKNIADVM
EEEEEEECCCHHHHH
30.9117644757
1172UbiquitinationVYYIETKKNIADVMT
EEEEEECCCHHHHHC
62.0923749301
1179PhosphorylationKNIADVMTKPLPIKT
CCHHHHHCCCCCCCC
29.3820377248
1180UbiquitinationNIADVMTKPLPIKTF
CHHHHHCCCCCCCCC
26.8523749301
1185UbiquitinationMTKPLPIKTFKLLTN
HCCCCCCCCCHHHHC
46.0722817900
1188UbiquitinationPLPIKTFKLLTNKWI
CCCCCCCHHHHCCCC
48.0615699485
1193AcetylationTFKLLTNKWIH----
CCHHHHCCCCC----
42.1424489116

Upstream regulatory proteins (kinases for phosphorylation sites, E3 ubiquitin ligases of ubiquitination sites, ...)
Modified Location Modified Residue Modification Type of Upstream Proteins Gene Name of Upstream Proteins UniProt AC of Upstream Proteins Sources

Oops, there are no upstream regulatory protein records of YA11B_YEAST !!

Functions of PTM Sites
Modified Location Modified Residue Modification Function Reference

Oops, there are no descriptions of PTM sites of YA11B_YEAST !!

Disease-associated PTM Sites based on SAP

* Distance = the distance between SAP position and PTM sites.

Modified Location Modification Variant Position
(Distance <= 10)
Residue Change SAP Related Disease Reference

Oops, there are no SNP-PTM records of YA11B_YEAST !!

Protein-Protein Interaction
Interacting Protein Gene Name Interaction Type PPI Reference Domain-Domain Interactions
HSC82_YEASTHSC82physical
19536198
SSB2_YEASTSSB2physical
19536198

Drug and Disease Associations
Kegg Drug
DrugBank
There are no disease associations of PTM sites.
Regulatory Network of YA11B_YEAST

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Related Literatures of Post-Translational Modification
Phosphorylation
ReferencePubMed
"A multidimensional chromatography technology for in-depthphosphoproteome analysis.";
Albuquerque C.P., Smolka M.B., Payne S.H., Bafna V., Eng J., Zhou H.;
Mol. Cell. Proteomics 7:1389-1396(2008).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-377; SER-383; SER-401;SER-434; SER-446; THR-447; SER-494; SER-496; SER-522; THR-526;SER-534; SER-536; SER-581; SER-597; SER-602; SER-603 AND SER-622, ANDMASS SPECTROMETRY.
"Proteome-wide identification of in vivo targets of DNA damagecheckpoint kinases.";
Smolka M.B., Albuquerque C.P., Chen S.H., Zhou H.;
Proc. Natl. Acad. Sci. U.S.A. 104:10364-10369(2007).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-401; THR-403; SER-405;THR-406; SER-434; SER-446; THR-447; SER-494; SER-496; SER-522; SER-534AND SER-536, AND MASS SPECTROMETRY.
"Large-scale phosphorylation analysis of alpha-factor-arrestedSaccharomyces cerevisiae.";
Li X., Gerber S.A., Rudner A.D., Beausoleil S.A., Haas W., Villen J.,Elias J.E., Gygi S.P.;
J. Proteome Res. 6:1190-1197(2007).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-397; SER-401; SER-446;THR-447; SER-492; SER-494; SER-496; SER-522; SER-534 AND SER-622, ANDMASS SPECTROMETRY.

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