DNLI1_HUMAN - dbPTM
DNLI1_HUMAN - PTM Information in dbPTM
Basic Information of Protein
UniProt ID DNLI1_HUMAN
UniProt AC P18858
Protein Name DNA ligase 1
Gene Name LIG1
Organism Homo sapiens (Human).
Sequence Length 919
Subcellular Localization Nucleus.
Protein Description DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair..
Protein Sequence MQRSIMSFFHPKKEGKAKKPEKEASNSSRETEPPPKAALKEWNGVVSESDSPVKRPGRKAARVLGSEGEEEDEALSPAKGQKPALDCSQVSPPRPATSPENNASLSDTSPMDSSPSGIPKRRTARKQLPKRTIQEVLEEQSEDEDREAKRKKEEEEEETPKESLTEAEVATEKEGEDGDQPTTPPKPLKTSKAETPTESVSEPEVATKQELQEEEEQTKPPRRAPKTLSSFFTPRKPAVKKEVKEEEPGAPGKEGAAEGPLDPSGYNPAKNNYHPVEDACWKPGQKVPYLAVARTFEKIEEVSARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNHLGPPQQGLELGVGDGVLLKAVAQATGRQLESVRAEAAEKGDVGLVAENSRSTQRLMLPPPPLTASGVFSKFRDIARLTGSASTAKKIDIIKGLFVACRHSEARFIARSLSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPPAMVDAGKGKTAEARKTWLEEQGMILKQTFCEVPDLDRIIPVLLEHGLERLPEHCKLSPGIPLKPMLAHPTRGISEVLKRFEEAAFTCEYKYDGQRAQIHALEGGEVKIFSRNQEDNTGKYPDIISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQVQVCLYAFDLIYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDIEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLASYDEDSEELQAICKLGTGFSDEELEEHHQSLKALVLPSPRPYVRIDGAVIPDHWLDPSAVWEVKCADLSLSPIYPAARGLVDSDKGISLRFPRFIRVREDKQPEQATTSAQVACLYRKQSQIQNQQGEDSGSDPEDTY
Overview of Protein Modification Sites with Functional and Structural Information
Experimental Post-Translational Modification Sites

* ASA = Accessible Surface Area

Locations Modification Substrate Peptides
&
Secondary Structure
ASA (%) Reference Orthologous
Protein Cluster
4Phosphorylation----MQRSIMSFFHP
----CCCCHHHHCCC
13.0230576142
7Phosphorylation-MQRSIMSFFHPKKE
-CCCCHHHHCCCCCC
24.0828555341
17 (in isoform 3)Phosphorylation-35.6425849741
19 (in isoform 3)Phosphorylation-64.3725849741
21 (in isoform 3)Phosphorylation-72.8525849741
27PhosphorylationPEKEASNSSRETEPP
CCHHCCCCCCCCCCC
28.4225627689
28PhosphorylationEKEASNSSRETEPPP
CHHCCCCCCCCCCCC
38.0828985074
40UbiquitinationPPPKAALKEWNGVVS
CCCHHHHHHHCCCCC
56.83-
47PhosphorylationKEWNGVVSESDSPVK
HHHCCCCCCCCCCCC
29.0423927012
49PhosphorylationWNGVVSESDSPVKRP
HCCCCCCCCCCCCCC
35.5622167270
51PhosphorylationGVVSESDSPVKRPGR
CCCCCCCCCCCCCCH
40.6519664994
66PhosphorylationKAARVLGSEGEEEDE
HHHHHHCCCCCHHCC
37.9619664994
76PhosphorylationEEEDEALSPAKGQKP
CHHCCCCCCCCCCCC
29.8419664994
79UbiquitinationDEALSPAKGQKPALD
CCCCCCCCCCCCCCC
66.32-
88PhosphorylationQKPALDCSQVSPPRP
CCCCCCCCCCCCCCC
33.0323401153
91PhosphorylationALDCSQVSPPRPATS
CCCCCCCCCCCCCCC
22.8819223468
97PhosphorylationVSPPRPATSPENNAS
CCCCCCCCCCCCCCC
47.7130278072
98PhosphorylationSPPRPATSPENNASL
CCCCCCCCCCCCCCC
32.1130278072
104PhosphorylationTSPENNASLSDTSPM
CCCCCCCCCCCCCCC
30.4530278072
106PhosphorylationPENNASLSDTSPMDS
CCCCCCCCCCCCCCC
36.0330278072
108PhosphorylationNNASLSDTSPMDSSP
CCCCCCCCCCCCCCC
31.2130278072
109PhosphorylationNASLSDTSPMDSSPS
CCCCCCCCCCCCCCC
24.1825159151
113PhosphorylationSDTSPMDSSPSGIPK
CCCCCCCCCCCCCCC
37.5923927012
114PhosphorylationDTSPMDSSPSGIPKR
CCCCCCCCCCCCCCH
20.8625159151
116PhosphorylationSPMDSSPSGIPKRRT
CCCCCCCCCCCCHHH
51.8323927012
132PhosphorylationRKQLPKRTIQEVLEE
HHHCCHHHHHHHHHH
32.8923927012
132 (in isoform 3)Phosphorylation-32.8925849741
141PhosphorylationQEVLEEQSEDEDREA
HHHHHHCCCHHHHHH
50.7419664994
146MethylationEQSEDEDREAKRKKE
HCCCHHHHHHHHHHH
43.66115482091
159PhosphorylationKEEEEEETPKESLTE
HHHHHHCCCHHHCCH
42.8323186163
163PhosphorylationEEETPKESLTEAEVA
HHCCCHHHCCHHHHC
46.8725159151
165PhosphorylationETPKESLTEAEVATE
CCCHHHCCHHHHCCC
42.2921815630
171PhosphorylationLTEAEVATEKEGEDG
CCHHHHCCCCCCCCC
53.4122167270
182PhosphorylationGEDGDQPTTPPKPLK
CCCCCCCCCCCCCCC
46.4229255136
183PhosphorylationEDGDQPTTPPKPLKT
CCCCCCCCCCCCCCC
44.2529255136
188UbiquitinationPTTPPKPLKTSKAET
CCCCCCCCCCCCCCC
13.59-
190PhosphorylationTPPKPLKTSKAETPT
CCCCCCCCCCCCCCC
43.0428176443
191PhosphorylationPPKPLKTSKAETPTE
CCCCCCCCCCCCCCC
28.4228176443
192UbiquitinationPKPLKTSKAETPTES
CCCCCCCCCCCCCCC
56.31-
195UbiquitinationLKTSKAETPTESVSE
CCCCCCCCCCCCCCC
40.13-
195PhosphorylationLKTSKAETPTESVSE
CCCCCCCCCCCCCCC
40.1319664994
197PhosphorylationTSKAETPTESVSEPE
CCCCCCCCCCCCCHH
48.5922167270
199PhosphorylationKAETPTESVSEPEVA
CCCCCCCCCCCHHHH
33.1629255136
201PhosphorylationETPTESVSEPEVATK
CCCCCCCCCHHHHCH
57.6319664994
207PhosphorylationVSEPEVATKQELQEE
CCCHHHHCHHHHHHH
38.1429255136
218PhosphorylationLQEEEEQTKPPRRAP
HHHHHHHCCCCCCCC
49.1226074081
219AcetylationQEEEEQTKPPRRAPK
HHHHHHCCCCCCCCC
53.3625953088
219UbiquitinationQEEEEQTKPPRRAPK
HHHHHHCCCCCCCCC
53.36-
226UbiquitinationKPPRRAPKTLSSFFT
CCCCCCCCCHHHCCC
62.2021890473
226AcetylationKPPRRAPKTLSSFFT
CCCCCCCCCHHHCCC
62.20-
226UbiquitinationKPPRRAPKTLSSFFT
CCCCCCCCCHHHCCC
62.2021890473
226UbiquitinationKPPRRAPKTLSSFFT
CCCCCCCCCHHHCCC
62.2021890473
227PhosphorylationPPRRAPKTLSSFFTP
CCCCCCCCHHHCCCC
30.7120068231
229PhosphorylationRRAPKTLSSFFTPRK
CCCCCCHHHCCCCCC
30.2623927012
230PhosphorylationRAPKTLSSFFTPRKP
CCCCCHHHCCCCCCC
27.7330266825
233PhosphorylationKTLSSFFTPRKPAVK
CCHHHCCCCCCCCCC
21.8530266825
240SumoylationTPRKPAVKKEVKEEE
CCCCCCCCHHHHCCC
45.37-
244SumoylationPAVKKEVKEEEPGAP
CCCCHHHHCCCCCCC
61.57-
244SumoylationPAVKKEVKEEEPGAP
CCCCHHHHCCCCCCC
61.57-
244UbiquitinationPAVKKEVKEEEPGAP
CCCCHHHHCCCCCCC
61.57-
255UbiquitinationPGAPGKEGAAEGPLD
CCCCCCCCCCCCCCC
33.31-
267UbiquitinationPLDPSGYNPAKNNYH
CCCCCCCCCCCCCCC
33.31-
270UbiquitinationPSGYNPAKNNYHPVE
CCCCCCCCCCCCCCC
47.16-
282UbiquitinationPVEDACWKPGQKVPY
CCCCCCCCCCCCCCE
38.87-
286UbiquitinationACWKPGQKVPYLAVA
CCCCCCCCCCEEEEE
51.60-
298UbiquitinationAVARTFEKIEEVSAR
EEEECHHHHHHHHHH
51.75-
303PhosphorylationFEKIEEVSARLRMVE
HHHHHHHHHHHHHHH
15.7926074081
311PhosphorylationARLRMVETLSNLLRS
HHHHHHHHHHHHHHH
24.8720068231
313PhosphorylationLRMVETLSNLLRSVV
HHHHHHHHHHHHHHH
32.6220068231
318PhosphorylationTLSNLLRSVVALSPP
HHHHHHHHHHHCCCC
22.4026074081
323PhosphorylationLRSVVALSPPDLLPV
HHHHHHCCCCHHHHH
25.3426074081
345UbiquitinationLGPPQQGLELGVGDG
CCCCCCCCCCCCCCH
4.22-
376UbiquitinationVRAEAAEKGDVGLVA
HHHHHHHHCCCEEEE
56.54-
376UbiquitinationVRAEAAEKGDVGLVA
HHHHHHHHCCCEEEE
56.5421906983
393SulfoxidationSRSTQRLMLPPPPLT
CCCCCCCCCCCCCCC
6.0221406390
397UbiquitinationQRLMLPPPPLTASGV
CCCCCCCCCCCCCHH
34.29-
406PhosphorylationLTASGVFSKFRDIAR
CCCCHHHHHHHHHHH
28.6020068231
407UbiquitinationTASGVFSKFRDIARL
CCCHHHHHHHHHHHH
32.7121890473
407UbiquitinationTASGVFSKFRDIARL
CCCHHHHHHHHHHHH
32.7121890473
407UbiquitinationTASGVFSKFRDIARL
CCCHHHHHHHHHHHH
32.7121890473
417PhosphorylationDIARLTGSASTAKKI
HHHHHHCCCHHHHHH
17.5124719451
419PhosphorylationARLTGSASTAKKIDI
HHHHCCCHHHHHHHH
30.5128851738
420PhosphorylationRLTGSASTAKKIDII
HHHCCCHHHHHHHHH
42.0628851738
422UbiquitinationTGSASTAKKIDIIKG
HCCCHHHHHHHHHHH
50.8021906983
428UbiquitinationAKKIDIIKGLFVACR
HHHHHHHHHHHHHHC
50.31-
437PhosphorylationLFVACRHSEARFIAR
HHHHHCCCHHHHHHH
17.3821712546
445PhosphorylationEARFIARSLSGRLRL
HHHHHHHHHCCCHHH
20.1921712546
447PhosphorylationRFIARSLSGRLRLGL
HHHHHHHCCCHHHCH
24.1021712546
493UbiquitinationGKTAEARKTWLEEQG
CCCHHHHHHHHHHHC
51.61-
506PhosphorylationQGMILKQTFCEVPDL
HCCEEEEEECCCCCH
28.7620860994
510UbiquitinationLKQTFCEVPDLDRII
EEEEECCCCCHHHHH
4.74-
525UbiquitinationPVLLEHGLERLPEHC
HHHHHCHHHHCHHHC
3.60-
533UbiquitinationERLPEHCKLSPGIPL
HHCHHHCCCCCCCCC
54.64-
535PhosphorylationLPEHCKLSPGIPLKP
CHHHCCCCCCCCCCC
13.4320068231
541UbiquitinationLSPGIPLKPMLAHPT
CCCCCCCCCCCCCCC
24.03-
548PhosphorylationKPMLAHPTRGISEVL
CCCCCCCCCCHHHHH
31.4920068231
552PhosphorylationAHPTRGISEVLKRFE
CCCCCCHHHHHHHHH
25.2023312004
556UbiquitinationRGISEVLKRFEEAAF
CCHHHHHHHHHHHHC
61.28-
568UbiquitinationAAFTCEYKYDGQRAQ
HHCEEEEEECCCEEE
17.99-
585UbiquitinationALEGGEVKIFSRNQE
EECCCEEEEEECCCC
33.46-
597AcetylationNQEDNTGKYPDIISR
CCCCCCCCCCHHHHC
52.1225953088
597UbiquitinationNQEDNTGKYPDIISR
CCCCCCCCCCHHHHC
52.12-
599UbiquitinationEDNTGKYPDIISRIP
CCCCCCCCHHHHCCC
29.79-
630SumoylationVAWDREKKQIQPFQV
HCCHHHHCCCCCEEE
48.13-
630SumoylationVAWDREKKQIQPFQV
HCCHHHHCCCCCEEE
48.13-
630UbiquitinationVAWDREKKQIQPFQV
HCCHHHHCCCCCEEE
48.13-
639PhosphorylationIQPFQVLTTRKRKEV
CCCEEEEECCCCCCC
26.21-
697PhosphorylationEGEFVFATSLDTKDI
CCEEEEEEECCHHCH
20.5428787133
698PhosphorylationGEFVFATSLDTKDIE
CEEEEEEECCHHCHH
22.3328787133
701PhosphorylationVFATSLDTKDIEQIA
EEEEECCHHCHHHHH
35.5928787133
706UbiquitinationLDTKDIEQIAEFLEQ
CCHHCHHHHHHHHHH
40.29-
713UbiquitinationQIAEFLEQSVKDSCE
HHHHHHHHHHHHHCC
56.52-
714PhosphorylationIAEFLEQSVKDSCEG
HHHHHHHHHHHHCCC
23.0420068231
737UbiquitinationDATYEIAKRSHNWLK
CCCHHHHHHCCCHHH
61.16-
744UbiquitinationKRSHNWLKLKKDYLD
HHCCCHHHHCHHHHC
50.29-
764MethylationLDLVVIGAYLGRGKR
EEEEEEEEHHCCCCC
5.81-
764UbiquitinationLDLVVIGAYLGRGKR
EEEEEEEEHHCCCCC
5.81-
795MethylationEELQAICKLGTGFSD
HHHHHHHHHCCCCCH
43.7823583077
795UbiquitinationEELQAICKLGTGFSD
HHHHHHHHHCCCCCH
43.78-
798PhosphorylationQAICKLGTGFSDEEL
HHHHHHCCCCCHHHH
45.5528450419
801PhosphorylationCKLGTGFSDEELEEH
HHHCCCCCHHHHHHH
45.5223401153
811PhosphorylationELEEHHQSLKALVLP
HHHHHHHHHHHHHCC
27.7226074081
813UbiquitinationEEHHQSLKALVLPSP
HHHHHHHHHHHCCCC
44.94-
819PhosphorylationLKALVLPSPRPYVRI
HHHHHCCCCCCEEEE
29.4030266825
823PhosphorylationVLPSPRPYVRIDGAV
HCCCCCCEEEECCEE
12.0222199227
835UbiquitinationGAVIPDHWLDPSAVW
CEECCCCCCCHHHEE
15.16-
866AcetylationRGLVDSDKGISLRFP
CCCCCCCCCCCCCCC
63.1925953088
866UbiquitinationRGLVDSDKGISLRFP
CCCCCCCCCCCCCCC
63.19-
888PhosphorylationDKQPEQATTSAQVAC
CCCCCCCCHHHHHHH
22.4526074081
889PhosphorylationKQPEQATTSAQVACL
CCCCCCCHHHHHHHH
25.6926074081
890PhosphorylationQPEQATTSAQVACLY
CCCCCCHHHHHHHHH
16.6126074081
897PhosphorylationSAQVACLYRKQSQIQ
HHHHHHHHHHHHHHH
18.6926074081
901PhosphorylationACLYRKQSQIQNQQG
HHHHHHHHHHHHCCC
32.0822167270
911PhosphorylationQNQQGEDSGSDPEDT
HHCCCCCCCCCCCCC
35.5722167270
913PhosphorylationQQGEDSGSDPEDTY-
CCCCCCCCCCCCCC-
54.6822167270
918PhosphorylationSGSDPEDTY------
CCCCCCCCC------
29.4822167270
919PhosphorylationGSDPEDTY-------
CCCCCCCC-------
28.9522167270

Upstream regulatory proteins (kinases for phosphorylation sites, E3 ubiquitin ligases of ubiquitination sites, ...)
Modified Location Modified Residue Modification Type of Upstream Proteins Gene Name of Upstream Proteins UniProt AC of Upstream Proteins Sources
51SPhosphorylationKinaseCDK2P24941
PSP
66SPhosphorylationKinaseCSNK2A1P68400
GPS
66SPhosphorylationKinaseCK2-FAMILY-GPS
66SPhosphorylationKinaseCK2_GROUP-PhosphoELM
76SPhosphorylationKinaseCDK1P06493
PSP
76SPhosphorylationKinaseCDK2P24941
PSP
76SPhosphorylationKinaseCHEK1O14757
GPS
91SPhosphorylationKinaseCDK2P24941
PSP
233TPhosphorylationKinaseCDK2P24941
PSP

Functions of PTM Sites
Modified Location Modified Residue Modification Function Reference

Oops, there are no descriptions of PTM sites of DNLI1_HUMAN !!

Disease-associated PTM Sites based on SAP

* Distance = the distance between SAP position and PTM sites.

Modified Location Modification Variant Position
(Distance <= 10)
Residue Change SAP Related Disease Reference

Oops, there are no SNP-PTM records of DNLI1_HUMAN !!

Protein-Protein Interaction
Interacting Protein Gene Name Interaction Type PPI Reference Domain-Domain Interactions
MRE11_HUMANMRE11Aphysical
8530104
CTF18_HUMANCHTF18physical
26344197
FEN1_HUMANFEN1physical
26344197
STKL1_HUMANSTKLD1physical
26344197
UHRF1_HUMANUHRF1physical
28803780

Drug and Disease Associations
Kegg Disease
There are no disease associations of PTM sites.
OMIM Disease
There are no disease associations of PTM sites.
Kegg Drug
There are no disease associations of PTM sites.
DrugBank
DB00290Bleomycin
Regulatory Network of DNLI1_HUMAN

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Related Literatures of Post-Translational Modification
Phosphorylation
ReferencePubMed
"Quantitative phosphoproteomic analysis of T cell receptor signalingreveals system-wide modulation of protein-protein interactions.";
Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K.,Rodionov V., Han D.K.;
Sci. Signal. 2:RA46-RA46(2009).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-49; SER-51; SER-66;SER-76; SER-141; THR-195; SER-201; SER-229; THR-233; SER-911 ANDSER-913, AND MASS SPECTROMETRY.
"A quantitative atlas of mitotic phosphorylation.";
Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E.,Elledge S.J., Gygi S.P.;
Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-51; SER-66; SER-76;SER-141; THR-195; SER-201; THR-233; SER-911 AND SER-913, AND MASSSPECTROMETRY.
"Automated phosphoproteome analysis for cultured cancer cells by two-dimensional nanoLC-MS using a calcined titania/C18 biphasic column.";
Imami K., Sugiyama N., Kyono Y., Tomita M., Ishihama Y.;
Anal. Sci. 24:161-166(2008).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-49; SER-51 AND SER-141,AND MASS SPECTROMETRY.
"Quantitative phosphoproteome profiling of Wnt3a-mediated signalingnetwork: indicating the involvement of ribonucleoside-diphosphatereductase M2 subunit phosphorylation at residue serine 20 in canonicalWnt signal transduction.";
Tang L.-Y., Deng N., Wang L.-S., Dai J., Wang Z.-L., Jiang X.-S.,Li S.-J., Li L., Sheng Q.-H., Wu D.-Q., Li L., Zeng R.;
Mol. Cell. Proteomics 6:1952-1967(2007).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-66 AND SER-76, AND MASSSPECTROMETRY.
"Improved titanium dioxide enrichment of phosphopeptides from HeLacells and high confident phosphopeptide identification by cross-validation of MS/MS and MS/MS/MS spectra.";
Yu L.-R., Zhu Z., Chan K.C., Issaq H.J., Dimitrov D.S., Veenstra T.D.;
J. Proteome Res. 6:4150-4162(2007).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-230, AND MASSSPECTROMETRY.
"A probability-based approach for high-throughput proteinphosphorylation analysis and site localization.";
Beausoleil S.A., Villen J., Gerber S.A., Rush J., Gygi S.P.;
Nat. Biotechnol. 24:1285-1292(2006).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-51; SER-66; SER-76;THR-195 AND THR-233, AND MASS SPECTROMETRY.
"Global, in vivo, and site-specific phosphorylation dynamics insignaling networks.";
Olsen J.V., Blagoev B., Gnad F., Macek B., Kumar C., Mortensen P.,Mann M.;
Cell 127:635-648(2006).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-49; SER-66; SER-76;SER-141; THR-195; SER-201 AND THR-233, AND MASS SPECTROMETRY.
"Large-scale characterization of HeLa cell nuclear phosphoproteins.";
Beausoleil S.A., Jedrychowski M., Schwartz D., Elias J.E., Villen J.,Li J., Cohn M.A., Cantley L.C., Gygi S.P.;
Proc. Natl. Acad. Sci. U.S.A. 101:12130-12135(2004).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-66; SER-76; SER-141;THR-195 AND SER-911, AND MASS SPECTROMETRY.
"Combining protein-based IMAC, peptide-based IMAC, and MudPIT forefficient phosphoproteomic analysis.";
Cantin G.T., Yi W., Lu B., Park S.K., Xu T., Lee J.-D.,Yates J.R. III;
J. Proteome Res. 7:1346-1351(2008).
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-233, AND MASSSPECTROMETRY.
Ubiquitylation
ReferencePubMed
"Proteomic analysis of ubiquitinated proteins in normal hepatocytecell line Chang liver cells.";
Tan F., Lu L., Cai Y., Wang J., Xie Y., Wang L., Gong Y., Xu B.-E.,Wu J., Luo Y., Qiang B., Yuan J., Sun X., Peng X.;
Proteomics 8:2885-2896(2008).
Cited for: UBIQUITINATION [LARGE SCALE ANALYSIS] AT LYS-422, AND MASSSPECTROMETRY.

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