dbPTM

VAR3_ARATH - PTM Information in dbPTM

Basic Information of Protein

Overview of Protein Modification Sites with Functional and Structural Information
UniProt ID	VAR3_ARATH
UniProt AC	Q8S9K3
Protein Name	Zinc finger protein VAR3, chloroplastic {ECO:0000305}
Gene Name	VAR3 {ECO:0000303\|PubMed:15340011}
Organism	Arabidopsis thaliana (Mouse-ear cress).
Sequence Length	758
Subcellular Localization	Plastid, chloroplast . Localizes at punctuate loci in chloroplasts.
Protein Description	Probable component of some protein complex required for chloroplast and palisade cell development. [PubMed: 15340011 Involved in C-to-U editing of chloroplastic RNA. Controls a large number of chloroplastic editing sites. Binds the editing recognition trans-factors PCMP-H51/CRR28 and PCMP-H12/OTP82]
Protein Sequence	MNNSTRLISLFSPHPPPLFLLRGLYISRIANLRRFHRRAFPPSSVASTNLCSFRPLVSLPPLIPTFPIGRFYNHQVRVSAADFVPSYHNQQLPEWTELLQSLSKAGYFSDSGSISGLESEFFPGFPDELLRPALACLALARERPELLEMLSRRDVEVLVENGKPFLFKTGPDSLKRMSLYLRSGLQGIGKLMDMEKASTVDLMRLILSYVVDVASSEESKQHNKEIMESSVRSLLSQIAKMSLRPPESNVHDTMQNQYSDRDGQGVRSFQNNVEMKRGDWICSRCSGMNFARNVKCFQCDEARPKRQLTGSEWECPQCDFYNYGRNVACLRCDCKRPRDSSLNSANSDYSSDPELERRLVENEKKAQRWLSKVAQGGSDANSVDTDEDFPEIMPLRKGVNRYVVSTRKPPLERRLANTENRVATDGNSKRSDDNALGSKTTRSLNEILGSSSSLTSRSDDKNVSSRRFESSQGINTDFVPFVPLPSDMFAKKPKEETQIGLIDNIQVDGFSGGNQNVYQEDKSDANHSGKETDRLEKEDHKSEEPARWFKRVTELHNVSDLESAIPQEISPEKMPMRKGENRFVVSRKKDRSLTSPAYKRPEDSDFVPFVPFPPDYFAKEKQPKESIDTLPAPATENVSQVVQQEPREPSINKSDTVAVKIRNGKSLEGSLVKESDLLDMSEEAKAERWFKRVAEIKNISELSEIPDEDFPSIMPMRKGVNRFVVSKRKTPLERRLTSQRHQRNPHITNSDPTGKGDK

Experimental Post-Translational Modification Sites

* ASA = Accessible Surface Area

Locations	Modification	Substrate Peptides & Secondary Structure	ASA (%)	Reference	Orthologous Protein Cluster
350	Phosphorylation	NSANSDYSSDPELER CCCCCCCCCCHHHHH	33.00	25561503
351	Phosphorylation	SANSDYSSDPELERR CCCCCCCCCHHHHHH	51.46	25561503

Upstream regulatory proteins (kinases for phosphorylation sites, E3 ubiquitin ligases of ubiquitination sites, ...)

Modified Location	Modified Residue	Modification	Type of Upstream Proteins	Gene Name of Upstream Proteins	UniProt AC of Upstream Proteins	Sources
Oops, there are no upstream regulatory protein records of VAR3_ARATH !!

Functions of PTM Sites

Modified Location	Modified Residue	Modification	Function	Reference
Oops, there are no descriptions of PTM sites of VAR3_ARATH !!

Disease-associated PTM Sites based on SAP

* Distance = the distance between SAP position and PTM sites.

Modified Location	Modification	Variant Position (Distance <= 10)	Residue Change	SAP	Related Disease	Reference
Oops, there are no SNP-PTM records of VAR3_ARATH !!

Protein-Protein Interaction

Interacting Protein	Gene Name	Interaction Type	PPI Reference	Domain-Domain Interactions
CCD4_ARATH	NCED4	physical	15340011

Drug and Disease Associations

Kegg Drug
DrugBank
There are no disease associations of PTM sites.

Regulatory Network of VAR3_ARATH

Related Literatures of Post-Translational Modification