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Sep. 10, 2014:
A total of 174 experimentally verified S-nitrosylation sites on 94 S-nitrosylated proteins from individualized human colorectal cancer tissues using a label-free quantitation strategy.

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Protein Name: Lysine-specific histone demethylase 2

UniprotKB/SwissProt ID: Q8NB78 (Q8NB78)

Gene Name: KDM1B

Organism: Homo sapiens (Human)

Function: Histone demethylase that demethylates 'Lys-4' of histone H3, a specific tag for epigenetic transcriptional activation, thereby acting as a corepressor. Required for de novo DNA methylation of a subset of imprinted genes during oogenesis. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Demethylates both mono- and di-methylated 'Lys-4' of histone H3. Has no effect on tri-methylated 'Lys-4', mono-, di- or tri-methylated 'Lys-9', mono-, di- or tri-methylated 'Lys-27', mono-, di- or tri-methylated 'Lys-36' of histone H3, or on mono-, di- or tri-methylated 'Lys-20' of histone H4. Alone, it is unable to demethylate H3K4me on nucleosomes and requires the presence of GLYR1 to achieve such activity, they form a multifunctional enzyme complex that modifies transcribed chromatin and facilitates Pol II transcription through nucleosomes (PubMed:30970244)

Other Modifications: View all modification sites in dbPTM

Protein Subcellular Localization: Nucleus. Chromosome

Graphical Visualization of S-nitrosylation Sites:
InterPro ID Domain Name
IPR002937 Amino_oxidase
IPR036188 FAD/NAD-bd_sf
IPR050281 Flavin_monoamine_oxidase
IPR009057 Homeodomain-like_sf
IPR007526 SWIRM
IPR036388 WH-like_DNA-bd_sf
IPR011124 Znf_CW

The S-nitrosylation sites of Q8NB78

No. Position S-nitrosylated Peptide Secondary Structure of S-nitrosylated Peptide Solvent Accessibility of nitrosylated Site PubMed ID
1 331 NCKEALTPQK C IPHIIVRGLV   
2 600 LDIQLKSPVQ C IDYSGDEVQV   
3 65 KAGCTATCPV C FASASERCAK