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Sep. 10, 2014:
A total of 174 experimentally verified S-nitrosylation sites on 94 S-nitrosylated proteins from individualized human colorectal cancer tissues using a label-free quantitation strategy.

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Protein Name: RNA cytosine C(5)-methyltransferase NSUN2

UniprotKB/SwissProt ID: Q08J23 (Q08J23)

Gene Name: NSUN2

Organism: Homo sapiens (Human)

Function: RNA cytosine C(5)-methyltransferase that methylates cytosine to 5-methylcytosine (m5C) in various RNAs, such as tRNAs, mRNAs and some long non-coding RNAs (lncRNAs) (PubMed:17071714, PubMed:22995836, PubMed:31199786, PubMed:31358969). Involved in various processes, such as epidermal stem cell differentiation, testis differentiation and maternal to zygotic transition during early development: acts by increasing protein synthesis; cytosine C(5)-methylation promoting tRNA stability and preventing mRNA decay (PubMed:31199786). Methylates cytosine to 5-methylcytosine (m5C) at positions 34 and 48 of intron-containing tRNA(Leu)(CAA) precursors, and at positions 48, 49 and 50 of tRNA(Gly)(GCC) precursors (PubMed:17071714, PubMed:22995836, PubMed:31199786). tRNA methylation is required generation of RNA fragments derived from tRNAs (tRFs) (PubMed:31199786). Also mediates C(5)-methylation of mitochondrial tRNAs (PubMed:31276587). Catalyzes cytosine C(5)-methylation of mRNAs, leading to stabilize them and prevent mRNA decay: mRNA stabilization involves YBX1 that specifically recognizes and binds m5C-modified transcripts (PubMed:22395603, PubMed:31358969, PubMed:34556860). Cytosine C(5)-methylation of mRNAs also regulates mRNA export: methylated transcripts are specifically recognized by THOC4/ALYREF, which mediates mRNA nucleo-cytoplasmic shuttling (PubMed:28418038). Also mediates cytosine C(5)-methylation of non-coding RNAs, such as vault RNAs (vtRNAs), promoting their processing into regulatory small RNAs (PubMed:23871666). Cytosine C(5)-methylation of vtRNA VTRNA1.1 promotes its processing into small-vault RNA4 (svRNA4) and regulates epidermal differentiation (PubMed:31186410). May act downstream of Myc to regulate epidermal cell growth and proliferation (By similarity). Required for proper spindle assembly and chromosome segregation, independently of its methyltransferase activity (PubMed:19596847)

Other Modifications: View all modification sites in dbPTM

Protein Subcellular Localization: Nucleus, nucleolus. Cytoplasm. Mitochondrion. Cytoplasm, cytoskeleton, spindle. Secreted, extracellular exosome

Graphical Visualization of S-nitrosylation Sites:
InterPro ID Domain Name
IPR049560 MeTrfase_RsmB-F_NOP2_cat
IPR001678 MeTrfase_RsmB-F_NOP2_dom
IPR023267 RCMT
IPR023270 RCMT_NCL1
IPR029063 SAM-dependent_MTases_sf

The S-nitrosylation sites of Q08J23

No. Position S-nitrosylated Peptide Secondary Structure of S-nitrosylated Peptide Solvent Accessibility of nitrosylated Site PubMed ID
1 184 VRPHHKILDM C AAPGSKTTQL  CCCHHHHHHH H HHCCCCCCCC  2.66%
2 221 VIANDVDNKR C YLLVHQAKRL  CCCHHHHHHH H HHCCCCCCCC  2.75%
3 235 VHQAKRLSSP C IMVVNHDASS  CCCHHHHHHH H HHCCCCCCCC  3.19%
4 267 KEILFYDRIL C DVPCSGDGTM  CCCHHHHHHH H HHCCCCCCCC  4.63%
5 321 AEGGRMVYST C SLNPIEDEAV  CCCHHHHHHH H HHCCCCCCCC  3.42%
6 502 ENNGSKKDGV C GPPPSKKMKL  CCCHHHHHHH H HHCCCCCCCC  9.18%
7 599 CRNNSGEEFD C AFRLAQEGIY  CCCHHHHHHH H HHCCCCCCCC  4.72%
8 673 PDSANPDALQ C PIVLCGWRGK  CCCHHHHHHH H HHCCCCCCCC  2.3%
9 758 EANSPDVTAG C DPAGVHPPR-  CCCHHHHHHH H HHCCCCCCCC  5.41%
10 93 YKSHAKEILH C LKNKYFKELE  CCCHHHHHHH H HHCCCCCCCC  5.33% 19483679