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Sep. 10, 2014:
A total of 174 experimentally verified S-nitrosylation sites on 94 S-nitrosylated proteins from individualized human colorectal cancer tissues using a label-free quantitation strategy.
";
echo "";//bgcolor=\"#B0AFFF\" bgcolor=\"#FFB0AF\"
echo "
";
echo "";
echo "
"; $Cfile = explode(".",$File); //echo $fileNU; if($fileNU==1)//./nomC/1BUW_1DXT.txt 2LLT_2LLU.sup_all_atm { echo "";
echo "
"; mysql_free_result($result); } ?>
| SNC Protein | Resolution [Å] | Same SEQ Protein | Resolution [Å] | ||
| ".$data['SNC_Protein']." | ".$data['SNC_chain']." | ".$data['SNC_Resolution']." | ".$data['SameSEQProtein']." | ".$data['SameSEQChain']." | ".$data['SameSEQResolution']." |
| Length | RMSD | TM-score | 9Å of RMSD |
| ".$data['Length']." | ".$data['RMSD']." | ".$data['TM_score']." | ".$data['9A_RMSD']." |
"; $Cfile = explode(".",$File); //echo $fileNU; if($fileNU==1)//./nomC/1BUW_1DXT.txt 2LLT_2LLU.sup_all_atm { echo "
";
system("php ./TMtools20130511/C_SAseq.php ./TMtools20130511/rangeAA9/".$Cfile[0].".txt");
echo "";
}else
{
//echo "ABC";
echo "";//php C_SAseq.php ./nomC/1BUW_1DXT.txt
system("php ./TMtools20130511/C_SAseq.php ./TMtools20130511/nomC/".$Cfile[0].".txt");
echo "";
}
//show PDB
echo "| "; echo ""; echo ""; echo " | "; echo "||||
| "; echo " | PTM | "; echo "Style | "; echo "Surface | "; echo "Display | "; echo "SNO: ".$data['SNCsite']." | ";
}else
{
echo "SNO: ".$data['SNCsite']."_".$data['SameSQESite']." | ";
}
//echo "'select ".$Site.":".$Chain.";color White;color cartoon White;select ".$Site.":".$Chain.".CA;label Target;select ".$Site.":".$Chain.".SG;color red;label SG;'"; echo " | "; //echo ""; if($data['SNCsite']==$data['SameSQESite']) { echo "";//select all;spacefill off;wireframe off;select *A;color blue;select *B;color red;select all;cartoon\">"; }else { echo ""; } echo " | "; echo ""; if($data['SNCsite']==$data['SameSQESite']) { echo ""; echo ""; }else { echo ""; echo ""; } //echo ""; echo " | "; echo ""; if($data['SNCsite']==$data['SameSQESite']) { //echo ""; echo ""; echo ""; }else { //echo ""; echo ""; echo ""; } echo " | "; echo ""; //select 93:D;geoSurface on if($data['SNCsite']==$data['SameSQESite']) { echo ""; }else { echo ""; } //echo ""; echo " | "; echo ""; if($data['SNCsite']==$data['SameSQESite']) { //echo ""; $SiteM6=$data['SNCsite']-6; $SiteM1=$data['SNCsite']-1; $Site1=$data['SNCsite']+1; $Site6=$data['SNCsite']+6; }else { //echo ""; $SiteM6=$data['SNCsite']-6; $SiteM1=$data['SNCsite']-1; $Site1=$data['SNCsite']+1; $Site6=$data['SNCsite']+6; $Site2M6=$data['SameSQESite']-6; $Site2M1=$data['SameSQESite']-1; $Site21=$data['SameSQESite']+1; $Site26=$data['SameSQESite']+6; } //$SiteM6=$Site-6; $SiteM1=$Site-1; $Site1=$Site+1; $Site6=$Site+6; //echo "
| Flank: ".$SiteM6."~".$Site6." | ";
//echo "Flank: ".$SiteM6."~".$Site6." | ";
}else
{
echo "Flank: A_".$SiteM6."~".$Site6." B_".$Site2M6."~".$Site26." | ";
}
//echo "Flank: ".$Chain."_".$SiteM6."~".$Site6." | ";
echo ""; echo " | "; if($data['SNCsite']==$data['SameSQESite']) { echo ""; echo ""; }else { echo ""; echo ""; } echo " | "; echo ""; //$SiteM6=$Site-6;$SiteM1=$Site-1;$Site1=$Site+1;$Site6=$Site+6; if($data['SNCsite']==$data['SameSQESite']) { echo ""; echo ""; }else { echo ""; echo ""; } echo " | "; echo ""; //$SiteM6=$Site-6;$SiteM1=$Site-1;$Site1=$Site+1;$Site6=$Site+6; if($data['SNCsite']==$data['SameSQESite']) { echo ""; }else { echo ""; } //echo ""; echo " | "; echo ""; echo "
| All protein | "; echo ""; echo " | "; echo ""; echo ""; echo " | "; echo ""; echo ""; echo ""; echo " | "; echo ""; echo " |
| Other Function | "; echo ""; echo "||||
| Chain | "; echo ""; echo ""; echo " | Charge | "; echo ""; echo ""; echo " | "; echo "|
| "; echo " | ||||
"; mysql_free_result($result); } ?>